Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS16560 and HMPREF1078_RS16565 are separated by 719 nucleotides HMPREF1078_RS16565 and HMPREF1078_RS16570 are separated by 25 nucleotides
HMPREF1078_RS16560: HMPREF1078_RS16560 - putative DNA modification/repair radical SAM protein, at 17,271 to 18,539
_RS16560
HMPREF1078_RS16565: HMPREF1078_RS16565 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 19,259 to 20,290
_RS16565
HMPREF1078_RS16570: HMPREF1078_RS16570 - glycoside hydrolase family 3 N-terminal domain-containing protein, at 20,316 to 23,297
_RS16570
Position (kb) 19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 18.300 kb on - strand, within HMPREF1078_RS16560 at 18.320 kb on + strand, within HMPREF1078_RS16560 at 18.321 kb on - strand, within HMPREF1078_RS16560 at 18.341 kb on + strand, within HMPREF1078_RS16560 at 18.341 kb on + strand, within HMPREF1078_RS16560 at 18.341 kb on + strand, within HMPREF1078_RS16560 at 18.341 kb on + strand, within HMPREF1078_RS16560 at 18.342 kb on - strand, within HMPREF1078_RS16560 at 18.342 kb on - strand, within HMPREF1078_RS16560 at 18.342 kb on - strand, within HMPREF1078_RS16560 at 18.342 kb on - strand, within HMPREF1078_RS16560 at 18.346 kb on + strand, within HMPREF1078_RS16560 at 18.346 kb on + strand, within HMPREF1078_RS16560 at 18.370 kb on - strand, within HMPREF1078_RS16560 at 18.370 kb on - strand, within HMPREF1078_RS16560 at 18.401 kb on + strand, within HMPREF1078_RS16560 at 18.480 kb on + strand at 18.481 kb on - strand at 18.481 kb on - strand at 18.487 kb on + strand at 18.487 kb on + strand at 18.487 kb on + strand at 18.487 kb on + strand at 18.488 kb on - strand at 18.488 kb on - strand at 18.488 kb on - strand at 18.507 kb on + strand at 18.508 kb on - strand at 18.539 kb on + strand at 18.540 kb on - strand at 18.575 kb on - strand at 18.586 kb on - strand at 18.586 kb on - strand at 18.586 kb on - strand at 18.791 kb on - strand at 18.840 kb on - strand at 18.946 kb on + strand at 18.946 kb on + strand at 19.050 kb on + strand at 19.096 kb on + strand at 19.143 kb on - strand at 19.333 kb on + strand at 19.333 kb on + strand at 19.334 kb on - strand at 19.334 kb on - strand at 19.341 kb on + strand at 19.341 kb on + strand at 19.342 kb on - strand at 19.342 kb on - strand at 19.342 kb on - strand at 19.342 kb on - strand at 19.407 kb on + strand, within HMPREF1078_RS16565 at 19.552 kb on + strand, within HMPREF1078_RS16565 at 19.555 kb on - strand, within HMPREF1078_RS16565 at 19.688 kb on + strand, within HMPREF1078_RS16565 at 19.689 kb on - strand, within HMPREF1078_RS16565 at 19.691 kb on - strand, within HMPREF1078_RS16565 at 19.691 kb on - strand, within HMPREF1078_RS16565 at 19.694 kb on - strand, within HMPREF1078_RS16565 at 19.715 kb on + strand, within HMPREF1078_RS16565 at 19.786 kb on - strand, within HMPREF1078_RS16565 at 19.786 kb on - strand, within HMPREF1078_RS16565 at 19.786 kb on - strand, within HMPREF1078_RS16565 at 20.082 kb on - strand, within HMPREF1078_RS16565 at 20.082 kb on - strand, within HMPREF1078_RS16565 at 20.083 kb on + strand, within HMPREF1078_RS16565 at 20.103 kb on + strand, within HMPREF1078_RS16565 at 20.219 kb on + strand at 20.237 kb on + strand at 20.238 kb on - strand at 20.304 kb on - strand at 20.330 kb on + strand at 20.348 kb on + strand at 20.349 kb on - strand at 20.373 kb on + strand at 20.374 kb on - strand at 20.420 kb on + strand at 20.421 kb on - strand at 20.421 kb on - strand at 20.422 kb on + strand at 20.523 kb on - strand at 20.523 kb on - strand at 20.554 kb on - strand at 20.613 kb on + strand at 20.614 kb on - strand at 20.617 kb on + strand, within HMPREF1078_RS16570 at 20.618 kb on - strand, within HMPREF1078_RS16570 at 20.618 kb on - strand, within HMPREF1078_RS16570 at 20.618 kb on - strand, within HMPREF1078_RS16570 at 20.618 kb on - strand, within HMPREF1078_RS16570 at 20.746 kb on + strand, within HMPREF1078_RS16570 at 20.746 kb on + strand, within HMPREF1078_RS16570 at 20.816 kb on + strand, within HMPREF1078_RS16570 at 20.817 kb on - strand, within HMPREF1078_RS16570 at 20.948 kb on - strand, within HMPREF1078_RS16570 at 20.954 kb on - strand, within HMPREF1078_RS16570 at 21.025 kb on + strand, within HMPREF1078_RS16570 at 21.075 kb on + strand, within HMPREF1078_RS16570 at 21.112 kb on + strand, within HMPREF1078_RS16570 at 21.113 kb on - strand, within HMPREF1078_RS16570 at 21.159 kb on - strand, within HMPREF1078_RS16570 at 21.178 kb on + strand, within HMPREF1078_RS16570 at 21.179 kb on - strand, within HMPREF1078_RS16570 at 21.179 kb on - strand, within HMPREF1078_RS16570 at 21.183 kb on - strand, within HMPREF1078_RS16570
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 18,300 - HMPREF1078_RS16560 0.81 -1.6 18,320 + HMPREF1078_RS16560 0.83 +0.4 18,321 - HMPREF1078_RS16560 0.83 -0.7 18,341 + HMPREF1078_RS16560 0.84 +2.2 18,341 + HMPREF1078_RS16560 0.84 +1.3 18,341 + HMPREF1078_RS16560 0.84 +0.9 18,341 + HMPREF1078_RS16560 0.84 -1.6 18,342 - HMPREF1078_RS16560 0.84 +0.7 18,342 - HMPREF1078_RS16560 0.84 +1.1 18,342 - HMPREF1078_RS16560 0.84 -2.1 18,342 - HMPREF1078_RS16560 0.84 -0.9 18,346 + HMPREF1078_RS16560 0.85 -0.3 18,346 + HMPREF1078_RS16560 0.85 -1.4 18,370 - HMPREF1078_RS16560 0.87 +2.7 18,370 - HMPREF1078_RS16560 0.87 +0.6 18,401 + HMPREF1078_RS16560 0.89 -1.2 18,480 + -0.5 18,481 - +0.8 18,481 - -0.4 18,487 + -0.4 18,487 + -2.5 18,487 + +0.6 18,487 + -0.1 18,488 - -0.1 18,488 - +0.4 18,488 - -2.7 18,507 + -1.8 18,508 - +0.9 18,539 + +0.7 18,540 - -0.7 18,575 - +0.6 18,586 - -0.2 18,586 - +0.4 18,586 - -2.6 18,791 - +2.1 18,840 - -0.1 18,946 + +0.4 18,946 + -0.2 19,050 + -0.5 19,096 + -0.7 19,143 - -1.7 19,333 + +1.4 19,333 + -1.0 19,334 - -0.2 19,334 - +0.2 19,341 + +0.9 19,341 + -0.6 19,342 - -1.5 19,342 - -0.1 19,342 - +0.2 19,342 - -0.6 19,407 + HMPREF1078_RS16565 0.14 -0.8 19,552 + HMPREF1078_RS16565 0.28 +0.1 19,555 - HMPREF1078_RS16565 0.29 -1.8 19,688 + HMPREF1078_RS16565 0.42 +0.9 19,689 - HMPREF1078_RS16565 0.42 -0.1 19,691 - HMPREF1078_RS16565 0.42 -1.0 19,691 - HMPREF1078_RS16565 0.42 -0.9 19,694 - HMPREF1078_RS16565 0.42 +0.6 19,715 + HMPREF1078_RS16565 0.44 -0.1 19,786 - HMPREF1078_RS16565 0.51 -0.5 19,786 - HMPREF1078_RS16565 0.51 -1.0 19,786 - HMPREF1078_RS16565 0.51 +1.1 20,082 - HMPREF1078_RS16565 0.80 -1.5 20,082 - HMPREF1078_RS16565 0.80 +0.1 20,083 + HMPREF1078_RS16565 0.80 -1.5 20,103 + HMPREF1078_RS16565 0.82 +0.9 20,219 + +1.4 20,237 + -1.3 20,238 - -0.4 20,304 - +0.5 20,330 + -0.1 20,348 + -1.5 20,349 - -2.0 20,373 + -1.9 20,374 - -1.8 20,420 + -1.2 20,421 - +1.0 20,421 - -1.7 20,422 + +0.4 20,523 - +0.6 20,523 - -1.0 20,554 - +1.6 20,613 + -0.6 20,614 - -0.2 20,617 + HMPREF1078_RS16570 0.10 -0.2 20,618 - HMPREF1078_RS16570 0.10 -0.3 20,618 - HMPREF1078_RS16570 0.10 -0.1 20,618 - HMPREF1078_RS16570 0.10 -2.3 20,618 - HMPREF1078_RS16570 0.10 +0.3 20,746 + HMPREF1078_RS16570 0.14 -1.9 20,746 + HMPREF1078_RS16570 0.14 -1.9 20,816 + HMPREF1078_RS16570 0.17 -0.8 20,817 - HMPREF1078_RS16570 0.17 -1.3 20,948 - HMPREF1078_RS16570 0.21 -0.7 20,954 - HMPREF1078_RS16570 0.21 -0.8 21,025 + HMPREF1078_RS16570 0.24 +0.1 21,075 + HMPREF1078_RS16570 0.25 +0.3 21,112 + HMPREF1078_RS16570 0.27 +0.6 21,113 - HMPREF1078_RS16570 0.27 -0.0 21,159 - HMPREF1078_RS16570 0.28 -2.4 21,178 + HMPREF1078_RS16570 0.29 +0.8 21,179 - HMPREF1078_RS16570 0.29 -0.4 21,179 - HMPREF1078_RS16570 0.29 -1.0 21,183 - HMPREF1078_RS16570 0.29 -2.8
Or see this region's nucleotide sequence