Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS16120 and HMPREF1078_RS16125 are separated by 516 nucleotides HMPREF1078_RS16125 and HMPREF1078_RS16130 are separated by 162 nucleotides
HMPREF1078_RS16120: HMPREF1078_RS16120 - outer membrane beta-barrel protein, at 347,502 to 348,413
_RS16120
HMPREF1078_RS16125: HMPREF1078_RS16125 - hypothetical protein, at 348,930 to 349,118
_RS16125
HMPREF1078_RS16130: HMPREF1078_RS16130 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 349,281 to 350,804
_RS16130
Position (kb) 348
349
350 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 347.942 kb on + strand, within HMPREF1078_RS16120 at 347.943 kb on - strand, within HMPREF1078_RS16120 at 347.943 kb on - strand, within HMPREF1078_RS16120 at 347.996 kb on + strand, within HMPREF1078_RS16120 at 348.129 kb on - strand, within HMPREF1078_RS16120 at 348.175 kb on + strand, within HMPREF1078_RS16120 at 348.175 kb on + strand, within HMPREF1078_RS16120 at 348.175 kb on + strand, within HMPREF1078_RS16120 at 348.175 kb on + strand, within HMPREF1078_RS16120 at 348.176 kb on - strand, within HMPREF1078_RS16120 at 348.239 kb on + strand, within HMPREF1078_RS16120 at 348.240 kb on + strand, within HMPREF1078_RS16120 at 348.240 kb on - strand, within HMPREF1078_RS16120 at 348.388 kb on - strand at 348.411 kb on + strand at 348.412 kb on - strand at 348.482 kb on - strand at 348.520 kb on + strand at 348.520 kb on + strand at 348.520 kb on + strand at 348.521 kb on - strand at 348.521 kb on - strand at 348.521 kb on - strand at 348.528 kb on - strand at 348.534 kb on + strand at 348.534 kb on + strand at 348.535 kb on - strand at 348.535 kb on - strand at 348.535 kb on - strand at 348.536 kb on + strand at 348.537 kb on - strand at 348.540 kb on + strand at 348.541 kb on - strand at 348.544 kb on - strand at 348.546 kb on + strand at 348.547 kb on - strand at 348.550 kb on + strand at 348.564 kb on - strand at 348.564 kb on - strand at 348.566 kb on + strand at 348.569 kb on + strand at 348.569 kb on + strand at 348.573 kb on + strand at 348.574 kb on - strand at 348.574 kb on - strand at 348.574 kb on - strand at 348.574 kb on - strand at 348.581 kb on - strand at 348.582 kb on + strand at 348.582 kb on + strand at 348.583 kb on - strand at 348.583 kb on - strand at 348.583 kb on - strand at 348.583 kb on - strand at 348.586 kb on + strand at 348.587 kb on - strand at 348.587 kb on - strand at 348.593 kb on - strand at 348.593 kb on - strand at 348.597 kb on - strand at 348.606 kb on - strand at 348.606 kb on - strand at 348.606 kb on - strand at 348.606 kb on - strand at 348.606 kb on - strand at 348.616 kb on + strand at 348.640 kb on + strand at 348.640 kb on + strand at 348.765 kb on - strand at 348.777 kb on + strand at 348.790 kb on - strand at 348.833 kb on + strand at 348.834 kb on - strand at 348.834 kb on - strand at 348.835 kb on + strand at 348.835 kb on + strand at 348.836 kb on - strand at 348.836 kb on - strand at 348.838 kb on + strand at 348.895 kb on + strand at 348.896 kb on - strand at 348.896 kb on - strand at 348.941 kb on - strand at 349.018 kb on - strand, within HMPREF1078_RS16125 at 349.083 kb on - strand, within HMPREF1078_RS16125 at 349.112 kb on + strand at 349.173 kb on - strand at 349.199 kb on + strand at 349.206 kb on + strand at 349.211 kb on + strand at 349.216 kb on + strand at 349.216 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.224 kb on + strand at 349.224 kb on + strand at 349.660 kb on + strand, within HMPREF1078_RS16130 at 349.660 kb on + strand, within HMPREF1078_RS16130 at 349.664 kb on + strand, within HMPREF1078_RS16130 at 349.666 kb on + strand, within HMPREF1078_RS16130 at 349.706 kb on + strand, within HMPREF1078_RS16130 at 349.714 kb on + strand, within HMPREF1078_RS16130 at 349.714 kb on + strand, within HMPREF1078_RS16130 at 349.723 kb on + strand, within HMPREF1078_RS16130 at 349.723 kb on + strand, within HMPREF1078_RS16130 at 349.740 kb on + strand, within HMPREF1078_RS16130 at 349.973 kb on + strand, within HMPREF1078_RS16130 at 349.973 kb on + strand, within HMPREF1078_RS16130 at 349.973 kb on + strand, within HMPREF1078_RS16130 at 349.973 kb on + strand, within HMPREF1078_RS16130 at 349.994 kb on + strand, within HMPREF1078_RS16130 at 350.007 kb on + strand, within HMPREF1078_RS16130 at 350.007 kb on + strand, within HMPREF1078_RS16130 at 350.038 kb on + strand, within HMPREF1078_RS16130 at 350.080 kb on + strand, within HMPREF1078_RS16130 at 350.087 kb on + strand, within HMPREF1078_RS16130 at 350.087 kb on + strand, within HMPREF1078_RS16130 at 350.087 kb on + strand, within HMPREF1078_RS16130
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 347,942 + HMPREF1078_RS16120 0.48 -1.6 347,943 - HMPREF1078_RS16120 0.48 -0.9 347,943 - HMPREF1078_RS16120 0.48 +0.9 347,996 + HMPREF1078_RS16120 0.54 +1.8 348,129 - HMPREF1078_RS16120 0.69 +0.9 348,175 + HMPREF1078_RS16120 0.74 -1.1 348,175 + HMPREF1078_RS16120 0.74 -0.6 348,175 + HMPREF1078_RS16120 0.74 +1.1 348,175 + HMPREF1078_RS16120 0.74 -0.7 348,176 - HMPREF1078_RS16120 0.74 -0.8 348,239 + HMPREF1078_RS16120 0.81 -0.4 348,240 + HMPREF1078_RS16120 0.81 -1.2 348,240 - HMPREF1078_RS16120 0.81 +0.3 348,388 - -0.9 348,411 + +1.4 348,412 - -1.5 348,482 - +0.9 348,520 + -0.1 348,520 + -0.9 348,520 + -0.0 348,521 - +0.0 348,521 - -0.8 348,521 - +0.4 348,528 - -0.2 348,534 + -0.3 348,534 + -1.0 348,535 - -0.1 348,535 - -0.6 348,535 - -1.2 348,536 + -2.2 348,537 - -1.3 348,540 + +1.7 348,541 - +1.6 348,544 - -1.5 348,546 + +0.3 348,547 - -1.0 348,550 + -0.2 348,564 - -0.2 348,564 - -0.5 348,566 + +0.3 348,569 + -1.3 348,569 + +0.6 348,573 + +0.5 348,574 - +1.4 348,574 - -0.6 348,574 - -0.5 348,574 - -0.3 348,581 - +1.2 348,582 + -3.0 348,582 + +2.0 348,583 - +1.2 348,583 - -3.4 348,583 - -0.0 348,583 - -2.3 348,586 + +0.4 348,587 - -0.7 348,587 - -0.6 348,593 - -0.4 348,593 - -3.0 348,597 - -0.3 348,606 - +0.1 348,606 - +0.5 348,606 - -0.3 348,606 - -1.7 348,606 - -0.6 348,616 + +3.4 348,640 + +0.6 348,640 + +0.2 348,765 - -1.3 348,777 + +0.1 348,790 - -1.1 348,833 + -2.6 348,834 - +0.1 348,834 - +0.4 348,835 + -0.8 348,835 + -0.9 348,836 - +1.0 348,836 - -1.5 348,838 + -1.5 348,895 + -0.7 348,896 - -0.2 348,896 - -1.7 348,941 - +1.0 349,018 - HMPREF1078_RS16125 0.47 -0.2 349,083 - HMPREF1078_RS16125 0.81 -1.9 349,112 + +0.3 349,173 - +1.8 349,199 + +0.9 349,206 + +1.4 349,211 + -1.2 349,216 + +0.5 349,216 + -1.3 349,220 + +1.0 349,220 + +2.3 349,220 + -1.0 349,220 + -0.4 349,220 + +1.8 349,220 + +0.1 349,224 + -0.6 349,224 + +1.0 349,660 + HMPREF1078_RS16130 0.25 +1.8 349,660 + HMPREF1078_RS16130 0.25 -0.9 349,664 + HMPREF1078_RS16130 0.25 -1.5 349,666 + HMPREF1078_RS16130 0.25 +0.2 349,706 + HMPREF1078_RS16130 0.28 -0.8 349,714 + HMPREF1078_RS16130 0.28 -1.5 349,714 + HMPREF1078_RS16130 0.28 +0.8 349,723 + HMPREF1078_RS16130 0.29 +0.5 349,723 + HMPREF1078_RS16130 0.29 -0.2 349,740 + HMPREF1078_RS16130 0.30 -1.1 349,973 + HMPREF1078_RS16130 0.45 -0.9 349,973 + HMPREF1078_RS16130 0.45 +1.6 349,973 + HMPREF1078_RS16130 0.45 -2.3 349,973 + HMPREF1078_RS16130 0.45 -0.9 349,994 + HMPREF1078_RS16130 0.47 -0.6 350,007 + HMPREF1078_RS16130 0.48 -2.9 350,007 + HMPREF1078_RS16130 0.48 -3.1 350,038 + HMPREF1078_RS16130 0.50 -2.3 350,080 + HMPREF1078_RS16130 0.52 -1.1 350,087 + HMPREF1078_RS16130 0.53 -3.5 350,087 + HMPREF1078_RS16130 0.53 +0.5 350,087 + HMPREF1078_RS16130 0.53 -1.8
Or see this region's nucleotide sequence