Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS16115

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS16105 and HMPREF1078_RS16110 are separated by 17 nucleotidesHMPREF1078_RS16110 and HMPREF1078_RS16115 are separated by 12 nucleotidesHMPREF1078_RS16115 and HMPREF1078_RS16120 are separated by 20 nucleotides HMPREF1078_RS16105: HMPREF1078_RS16105 - sigma-70 family RNA polymerase sigma factor, at 345,947 to 346,441 _RS16105 HMPREF1078_RS16110: HMPREF1078_RS16110 - hypothetical protein, at 346,459 to 347,004 _RS16110 HMPREF1078_RS16115: HMPREF1078_RS16115 - hypothetical protein, at 347,017 to 347,481 _RS16115 HMPREF1078_RS16120: HMPREF1078_RS16120 - outer membrane beta-barrel protein, at 347,502 to 348,413 _RS16120 Position (kb) 347 348Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 346.101 kb on - strand, within HMPREF1078_RS16105at 346.101 kb on - strand, within HMPREF1078_RS16105at 346.102 kb on + strand, within HMPREF1078_RS16105at 346.102 kb on + strand, within HMPREF1078_RS16105at 346.125 kb on + strand, within HMPREF1078_RS16105at 346.126 kb on - strand, within HMPREF1078_RS16105at 346.186 kb on + strand, within HMPREF1078_RS16105at 346.188 kb on + strand, within HMPREF1078_RS16105at 346.188 kb on + strand, within HMPREF1078_RS16105at 346.189 kb on - strand, within HMPREF1078_RS16105at 346.275 kb on + strand, within HMPREF1078_RS16105at 346.279 kb on + strand, within HMPREF1078_RS16105at 346.279 kb on + strand, within HMPREF1078_RS16105at 346.280 kb on - strand, within HMPREF1078_RS16105at 346.280 kb on - strand, within HMPREF1078_RS16105at 346.426 kb on - strandat 346.426 kb on - strandat 346.426 kb on - strandat 346.437 kb on + strandat 346.438 kb on - strandat 346.445 kb on - strandat 346.446 kb on + strandat 346.458 kb on + strandat 346.475 kb on + strandat 346.475 kb on + strandat 346.475 kb on + strandat 346.479 kb on + strandat 346.479 kb on + strandat 346.479 kb on + strandat 346.479 kb on + strandat 346.484 kb on + strandat 346.484 kb on + strandat 346.484 kb on + strandat 346.484 kb on + strandat 346.484 kb on + strandat 346.504 kb on + strandat 346.591 kb on + strand, within HMPREF1078_RS16110at 346.591 kb on + strand, within HMPREF1078_RS16110at 346.591 kb on + strand, within HMPREF1078_RS16110at 346.592 kb on - strand, within HMPREF1078_RS16110at 346.592 kb on - strand, within HMPREF1078_RS16110at 346.610 kb on - strand, within HMPREF1078_RS16110at 346.724 kb on - strand, within HMPREF1078_RS16110at 346.816 kb on + strand, within HMPREF1078_RS16110at 346.816 kb on + strand, within HMPREF1078_RS16110at 346.816 kb on + strand, within HMPREF1078_RS16110at 346.816 kb on + strand, within HMPREF1078_RS16110at 346.816 kb on + strand, within HMPREF1078_RS16110at 346.817 kb on - strand, within HMPREF1078_RS16110at 346.817 kb on - strand, within HMPREF1078_RS16110at 346.817 kb on - strand, within HMPREF1078_RS16110at 346.840 kb on + strand, within HMPREF1078_RS16110at 346.841 kb on - strand, within HMPREF1078_RS16110at 346.842 kb on + strand, within HMPREF1078_RS16110at 346.912 kb on + strand, within HMPREF1078_RS16110at 346.912 kb on + strand, within HMPREF1078_RS16110at 346.913 kb on - strand, within HMPREF1078_RS16110at 346.913 kb on - strand, within HMPREF1078_RS16110at 346.913 kb on - strand, within HMPREF1078_RS16110at 346.929 kb on + strand, within HMPREF1078_RS16110at 346.929 kb on + strand, within HMPREF1078_RS16110at 346.952 kb on + strandat 346.955 kb on + strandat 346.955 kb on + strandat 346.956 kb on - strandat 346.960 kb on - strandat 346.977 kb on - strandat 346.977 kb on - strandat 346.990 kb on - strandat 347.010 kb on + strandat 347.033 kb on - strandat 347.035 kb on - strandat 347.039 kb on + strandat 347.039 kb on + strandat 347.039 kb on + strandat 347.045 kb on + strandat 347.045 kb on + strandat 347.045 kb on + strandat 347.191 kb on + strand, within HMPREF1078_RS16115at 347.191 kb on + strand, within HMPREF1078_RS16115at 347.191 kb on + strand, within HMPREF1078_RS16115at 347.191 kb on + strand, within HMPREF1078_RS16115at 347.191 kb on + strand, within HMPREF1078_RS16115at 347.192 kb on - strand, within HMPREF1078_RS16115at 347.196 kb on + strand, within HMPREF1078_RS16115at 347.196 kb on + strand, within HMPREF1078_RS16115at 347.197 kb on - strand, within HMPREF1078_RS16115at 347.207 kb on - strand, within HMPREF1078_RS16115at 347.207 kb on - strand, within HMPREF1078_RS16115at 347.208 kb on + strand, within HMPREF1078_RS16115at 347.208 kb on + strand, within HMPREF1078_RS16115at 347.333 kb on - strand, within HMPREF1078_RS16115at 347.335 kb on + strand, within HMPREF1078_RS16115at 347.335 kb on + strand, within HMPREF1078_RS16115at 347.416 kb on + strand, within HMPREF1078_RS16115at 347.416 kb on + strand, within HMPREF1078_RS16115at 347.419 kb on - strand, within HMPREF1078_RS16115at 347.460 kb on - strandat 347.488 kb on - strandat 347.612 kb on + strand, within HMPREF1078_RS16120at 347.613 kb on - strand, within HMPREF1078_RS16120at 347.656 kb on - strand, within HMPREF1078_RS16120at 347.684 kb on - strand, within HMPREF1078_RS16120at 347.747 kb on + strand, within HMPREF1078_RS16120at 347.747 kb on + strand, within HMPREF1078_RS16120at 347.747 kb on + strand, within HMPREF1078_RS16120at 347.747 kb on + strand, within HMPREF1078_RS16120at 347.900 kb on + strand, within HMPREF1078_RS16120at 347.901 kb on - strand, within HMPREF1078_RS16120at 347.901 kb on - strand, within HMPREF1078_RS16120at 347.901 kb on - strand, within HMPREF1078_RS16120at 347.901 kb on - strand, within HMPREF1078_RS16120at 347.942 kb on + strand, within HMPREF1078_RS16120at 347.943 kb on - strand, within HMPREF1078_RS16120at 347.943 kb on - strand, within HMPREF1078_RS16120at 347.996 kb on + strand, within HMPREF1078_RS16120at 348.129 kb on - strand, within HMPREF1078_RS16120at 348.175 kb on + strand, within HMPREF1078_RS16120at 348.175 kb on + strand, within HMPREF1078_RS16120at 348.175 kb on + strand, within HMPREF1078_RS16120at 348.175 kb on + strand, within HMPREF1078_RS16120at 348.176 kb on - strand, within HMPREF1078_RS16120at 348.239 kb on + strand, within HMPREF1078_RS16120at 348.240 kb on + strand, within HMPREF1078_RS16120at 348.240 kb on - strand, within HMPREF1078_RS16120at 348.388 kb on - strandat 348.411 kb on + strandat 348.412 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C)
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346,101 - HMPREF1078_RS16105 0.31 -2.8
346,101 - HMPREF1078_RS16105 0.31 -0.8
346,102 + HMPREF1078_RS16105 0.31 -1.5
346,102 + HMPREF1078_RS16105 0.31 +1.2
346,125 + HMPREF1078_RS16105 0.36 -0.7
346,126 - HMPREF1078_RS16105 0.36 +0.9
346,186 + HMPREF1078_RS16105 0.48 -1.1
346,188 + HMPREF1078_RS16105 0.49 +1.0
346,188 + HMPREF1078_RS16105 0.49 +0.1
346,189 - HMPREF1078_RS16105 0.49 -0.0
346,275 + HMPREF1078_RS16105 0.66 +1.2
346,279 + HMPREF1078_RS16105 0.67 -0.8
346,279 + HMPREF1078_RS16105 0.67 +0.0
346,280 - HMPREF1078_RS16105 0.67 -0.7
346,280 - HMPREF1078_RS16105 0.67 +0.7
346,426 - -0.3
346,426 - +0.2
346,426 - +1.8
346,437 + -0.0
346,438 - -1.4
346,445 - -2.7
346,446 + +0.3
346,458 + -3.2
346,475 + -0.4
346,475 + -0.5
346,475 + -1.6
346,479 + -1.8
346,479 + -2.2
346,479 + -1.6
346,479 + -0.3
346,484 + -0.0
346,484 + +1.8
346,484 + -1.1
346,484 + -1.5
346,484 + +0.5
346,504 + +0.4
346,591 + HMPREF1078_RS16110 0.24 -2.9
346,591 + HMPREF1078_RS16110 0.24 -1.3
346,591 + HMPREF1078_RS16110 0.24 -0.3
346,592 - HMPREF1078_RS16110 0.24 -1.5
346,592 - HMPREF1078_RS16110 0.24 +0.5
346,610 - HMPREF1078_RS16110 0.28 +0.1
346,724 - HMPREF1078_RS16110 0.49 -1.8
346,816 + HMPREF1078_RS16110 0.65 -0.0
346,816 + HMPREF1078_RS16110 0.65 +0.7
346,816 + HMPREF1078_RS16110 0.65 -0.2
346,816 + HMPREF1078_RS16110 0.65 -1.6
346,816 + HMPREF1078_RS16110 0.65 -1.0
346,817 - HMPREF1078_RS16110 0.66 +0.2
346,817 - HMPREF1078_RS16110 0.66 +0.5
346,817 - HMPREF1078_RS16110 0.66 +1.2
346,840 + HMPREF1078_RS16110 0.70 -1.2
346,841 - HMPREF1078_RS16110 0.70 -1.0
346,842 + HMPREF1078_RS16110 0.70 -3.0
346,912 + HMPREF1078_RS16110 0.83 -0.7
346,912 + HMPREF1078_RS16110 0.83 +0.5
346,913 - HMPREF1078_RS16110 0.83 -1.1
346,913 - HMPREF1078_RS16110 0.83 +0.8
346,913 - HMPREF1078_RS16110 0.83 +1.0
346,929 + HMPREF1078_RS16110 0.86 -1.7
346,929 + HMPREF1078_RS16110 0.86 +0.1
346,952 + -0.4
346,955 + -2.1
346,955 + -0.1
346,956 - +0.5
346,960 - -0.0
346,977 - -1.7
346,977 - +0.5
346,990 - +0.2
347,010 + -0.0
347,033 - -1.1
347,035 - -1.1
347,039 + +2.3
347,039 + -0.0
347,039 + +0.2
347,045 + -0.9
347,045 + -1.9
347,045 + -1.0
347,191 + HMPREF1078_RS16115 0.37 -0.6
347,191 + HMPREF1078_RS16115 0.37 -2.2
347,191 + HMPREF1078_RS16115 0.37 -2.3
347,191 + HMPREF1078_RS16115 0.37 -0.1
347,191 + HMPREF1078_RS16115 0.37 +0.2
347,192 - HMPREF1078_RS16115 0.38 +1.0
347,196 + HMPREF1078_RS16115 0.38 -2.7
347,196 + HMPREF1078_RS16115 0.38 -1.8
347,197 - HMPREF1078_RS16115 0.39 -1.0
347,207 - HMPREF1078_RS16115 0.41 +2.8
347,207 - HMPREF1078_RS16115 0.41 -2.4
347,208 + HMPREF1078_RS16115 0.41 -0.1
347,208 + HMPREF1078_RS16115 0.41 -2.3
347,333 - HMPREF1078_RS16115 0.68 -0.5
347,335 + HMPREF1078_RS16115 0.68 -1.6
347,335 + HMPREF1078_RS16115 0.68 -0.2
347,416 + HMPREF1078_RS16115 0.86 -0.9
347,416 + HMPREF1078_RS16115 0.86 -1.9
347,419 - HMPREF1078_RS16115 0.86 -0.9
347,460 - -2.2
347,488 - -0.6
347,612 + HMPREF1078_RS16120 0.12 -2.2
347,613 - HMPREF1078_RS16120 0.12 -1.4
347,656 - HMPREF1078_RS16120 0.17 -0.4
347,684 - HMPREF1078_RS16120 0.20 +0.9
347,747 + HMPREF1078_RS16120 0.27 -1.2
347,747 + HMPREF1078_RS16120 0.27 +0.5
347,747 + HMPREF1078_RS16120 0.27 +0.4
347,747 + HMPREF1078_RS16120 0.27 +0.3
347,900 + HMPREF1078_RS16120 0.44 -0.7
347,901 - HMPREF1078_RS16120 0.44 -0.5
347,901 - HMPREF1078_RS16120 0.44 -1.1
347,901 - HMPREF1078_RS16120 0.44 +0.7
347,901 - HMPREF1078_RS16120 0.44 +0.1
347,942 + HMPREF1078_RS16120 0.48 -1.6
347,943 - HMPREF1078_RS16120 0.48 -0.9
347,943 - HMPREF1078_RS16120 0.48 +0.9
347,996 + HMPREF1078_RS16120 0.54 +1.8
348,129 - HMPREF1078_RS16120 0.69 +0.9
348,175 + HMPREF1078_RS16120 0.74 -1.1
348,175 + HMPREF1078_RS16120 0.74 -0.6
348,175 + HMPREF1078_RS16120 0.74 +1.1
348,175 + HMPREF1078_RS16120 0.74 -0.7
348,176 - HMPREF1078_RS16120 0.74 -0.8
348,239 + HMPREF1078_RS16120 0.81 -0.4
348,240 + HMPREF1078_RS16120 0.81 -1.2
348,240 - HMPREF1078_RS16120 0.81 +0.3
348,388 - -0.9
348,411 + +1.4
348,412 - -1.5

Or see this region's nucleotide sequence