Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15445 and HMPREF1078_RS15450 are separated by 11 nucleotides HMPREF1078_RS15450 and HMPREF1078_RS15455 are separated by 10 nucleotides HMPREF1078_RS15455 and HMPREF1078_RS15460 are separated by 100 nucleotides
HMPREF1078_RS15445: HMPREF1078_RS15445 - electron transport complex subunit RsxC, at 184,763 to 186,094
_RS15445
HMPREF1078_RS15450: HMPREF1078_RS15450 - Fe-S cluster domain-containing protein, at 186,106 to 187,116
_RS15450
HMPREF1078_RS15455: HMPREF1078_RS15455 - SoxR reducing system RseC family protein, at 187,127 to 187,543
_RS15455
HMPREF1078_RS15460: HMPREF1078_RS15460 - DUF3078 domain-containing protein, at 187,644 to 189,224
_RS15460
Position (kb) 186
187
188 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 186.304 kb on - strand, within HMPREF1078_RS15450 at 187.148 kb on - strand at 187.588 kb on - strand at 187.599 kb on - strand at 187.619 kb on + strand at 187.630 kb on + strand at 187.630 kb on + strand at 187.655 kb on - strand at 187.655 kb on - strand at 187.693 kb on + strand at 187.694 kb on - strand at 187.733 kb on - strand at 187.733 kb on - strand at 187.811 kb on + strand, within HMPREF1078_RS15460 at 187.834 kb on + strand, within HMPREF1078_RS15460 at 188.017 kb on + strand, within HMPREF1078_RS15460 at 188.017 kb on + strand, within HMPREF1078_RS15460 at 188.017 kb on + strand, within HMPREF1078_RS15460 at 188.017 kb on + strand, within HMPREF1078_RS15460 at 188.017 kb on + strand, within HMPREF1078_RS15460 at 188.017 kb on + strand, within HMPREF1078_RS15460 at 188.017 kb on + strand, within HMPREF1078_RS15460 at 188.018 kb on - strand, within HMPREF1078_RS15460 at 188.018 kb on - strand, within HMPREF1078_RS15460 at 188.018 kb on - strand, within HMPREF1078_RS15460 at 188.018 kb on - strand, within HMPREF1078_RS15460 at 188.018 kb on - strand, within HMPREF1078_RS15460 at 188.018 kb on - strand, within HMPREF1078_RS15460 at 188.018 kb on - strand, within HMPREF1078_RS15460 at 188.021 kb on + strand, within HMPREF1078_RS15460 at 188.021 kb on + strand, within HMPREF1078_RS15460 at 188.021 kb on + strand, within HMPREF1078_RS15460 at 188.022 kb on - strand, within HMPREF1078_RS15460 at 188.023 kb on + strand, within HMPREF1078_RS15460 at 188.023 kb on + strand, within HMPREF1078_RS15460 at 188.023 kb on + strand, within HMPREF1078_RS15460 at 188.023 kb on + strand, within HMPREF1078_RS15460 at 188.027 kb on + strand, within HMPREF1078_RS15460 at 188.027 kb on + strand, within HMPREF1078_RS15460 at 188.028 kb on - strand, within HMPREF1078_RS15460 at 188.028 kb on - strand, within HMPREF1078_RS15460 at 188.028 kb on - strand, within HMPREF1078_RS15460 at 188.028 kb on - strand, within HMPREF1078_RS15460 at 188.030 kb on - strand, within HMPREF1078_RS15460 at 188.030 kb on - strand, within HMPREF1078_RS15460 at 188.085 kb on - strand, within HMPREF1078_RS15460 at 188.104 kb on + strand, within HMPREF1078_RS15460
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 186,304 - HMPREF1078_RS15450 0.20 -2.7 187,148 - +0.1 187,588 - -0.0 187,599 - +2.0 187,619 + -3.0 187,630 + -0.7 187,630 + +0.5 187,655 - -0.4 187,655 - -0.5 187,693 + -0.2 187,694 - +1.0 187,733 - -0.8 187,733 - +0.8 187,811 + HMPREF1078_RS15460 0.11 -1.4 187,834 + HMPREF1078_RS15460 0.12 -0.5 188,017 + HMPREF1078_RS15460 0.24 -0.7 188,017 + HMPREF1078_RS15460 0.24 +0.1 188,017 + HMPREF1078_RS15460 0.24 +0.5 188,017 + HMPREF1078_RS15460 0.24 -0.3 188,017 + HMPREF1078_RS15460 0.24 -0.5 188,017 + HMPREF1078_RS15460 0.24 -0.8 188,017 + HMPREF1078_RS15460 0.24 +1.2 188,018 - HMPREF1078_RS15460 0.24 -1.2 188,018 - HMPREF1078_RS15460 0.24 -1.1 188,018 - HMPREF1078_RS15460 0.24 +0.3 188,018 - HMPREF1078_RS15460 0.24 +1.8 188,018 - HMPREF1078_RS15460 0.24 -0.4 188,018 - HMPREF1078_RS15460 0.24 -1.7 188,018 - HMPREF1078_RS15460 0.24 -0.9 188,021 + HMPREF1078_RS15460 0.24 -1.0 188,021 + HMPREF1078_RS15460 0.24 -1.3 188,021 + HMPREF1078_RS15460 0.24 +0.2 188,022 - HMPREF1078_RS15460 0.24 -1.4 188,023 + HMPREF1078_RS15460 0.24 -0.7 188,023 + HMPREF1078_RS15460 0.24 -0.2 188,023 + HMPREF1078_RS15460 0.24 +2.8 188,023 + HMPREF1078_RS15460 0.24 +0.9 188,027 + HMPREF1078_RS15460 0.24 +0.9 188,027 + HMPREF1078_RS15460 0.24 +2.3 188,028 - HMPREF1078_RS15460 0.24 -1.7 188,028 - HMPREF1078_RS15460 0.24 -0.8 188,028 - HMPREF1078_RS15460 0.24 -0.5 188,028 - HMPREF1078_RS15460 0.24 -1.8 188,030 - HMPREF1078_RS15460 0.24 +0.4 188,030 - HMPREF1078_RS15460 0.24 +0.3 188,085 - HMPREF1078_RS15460 0.28 +0.1 188,104 + HMPREF1078_RS15460 0.29 -1.3
Or see this region's nucleotide sequence