Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14985 and HMPREF1078_RS14990 overlap by 81 nucleotides HMPREF1078_RS14990 and HMPREF1078_RS14995 are separated by 141 nucleotides HMPREF1078_RS14995 and HMPREF1078_RS15000 are separated by 110 nucleotides HMPREF1078_RS15000 and HMPREF1078_RS15005 are separated by 401 nucleotides
HMPREF1078_RS14985: HMPREF1078_RS14985 - hypothetical protein, at 50,814 to 51,248
_RS14985
HMPREF1078_RS14990: HMPREF1078_RS14990 - RNA methyltransferase, at 51,168 to 51,938
_RS14990
HMPREF1078_RS14995: HMPREF1078_RS14995 - BamA/TamA family outer membrane protein, at 52,080 to 54,428
_RS14995
HMPREF1078_RS15000: HMPREF1078_RS15000 - tRNA-Arg, at 54,539 to 54,612
_RS15000
HMPREF1078_RS15005: HMPREF1078_RS15005 - biosynthetic arginine decarboxylase, at 55,014 to 56,906
_RS15005
Position (kb) 52
53
54
55 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 51.134 kb on + strand, within HMPREF1078_RS14985 at 51.135 kb on - strand, within HMPREF1078_RS14985 at 51.170 kb on - strand at 51.170 kb on - strand at 51.170 kb on - strand at 51.231 kb on + strand at 51.231 kb on + strand at 51.231 kb on + strand at 51.278 kb on + strand, within HMPREF1078_RS14990 at 51.279 kb on - strand, within HMPREF1078_RS14990 at 51.319 kb on - strand, within HMPREF1078_RS14990 at 51.319 kb on - strand, within HMPREF1078_RS14990 at 51.376 kb on + strand, within HMPREF1078_RS14990 at 51.377 kb on - strand, within HMPREF1078_RS14990 at 51.377 kb on - strand, within HMPREF1078_RS14990 at 51.377 kb on - strand, within HMPREF1078_RS14990 at 51.402 kb on - strand, within HMPREF1078_RS14990 at 51.461 kb on - strand, within HMPREF1078_RS14990 at 51.471 kb on + strand, within HMPREF1078_RS14990 at 51.472 kb on - strand, within HMPREF1078_RS14990 at 51.472 kb on - strand, within HMPREF1078_RS14990 at 51.472 kb on - strand, within HMPREF1078_RS14990 at 51.549 kb on - strand, within HMPREF1078_RS14990 at 51.580 kb on - strand, within HMPREF1078_RS14990 at 51.609 kb on + strand, within HMPREF1078_RS14990 at 51.610 kb on - strand, within HMPREF1078_RS14990 at 51.639 kb on - strand, within HMPREF1078_RS14990 at 51.690 kb on + strand, within HMPREF1078_RS14990 at 51.691 kb on - strand, within HMPREF1078_RS14990 at 51.691 kb on - strand, within HMPREF1078_RS14990 at 51.691 kb on - strand, within HMPREF1078_RS14990 at 51.887 kb on - strand at 51.913 kb on + strand at 51.951 kb on + strand at 51.964 kb on + strand at 51.965 kb on - strand at 51.983 kb on - strand at 52.003 kb on + strand at 52.003 kb on + strand at 52.049 kb on + strand at 52.105 kb on - strand at 52.140 kb on - strand at 52.153 kb on - strand at 52.171 kb on - strand at 52.171 kb on - strand at 52.214 kb on + strand at 52.422 kb on - strand, within HMPREF1078_RS14995 at 52.434 kb on + strand, within HMPREF1078_RS14995 at 52.436 kb on + strand, within HMPREF1078_RS14995 at 52.436 kb on + strand, within HMPREF1078_RS14995 at 52.437 kb on - strand, within HMPREF1078_RS14995 at 52.460 kb on + strand, within HMPREF1078_RS14995 at 52.461 kb on - strand, within HMPREF1078_RS14995 at 52.512 kb on - strand, within HMPREF1078_RS14995 at 52.536 kb on + strand, within HMPREF1078_RS14995 at 52.536 kb on + strand, within HMPREF1078_RS14995 at 52.559 kb on + strand, within HMPREF1078_RS14995 at 52.560 kb on - strand, within HMPREF1078_RS14995 at 52.563 kb on + strand, within HMPREF1078_RS14995 at 52.568 kb on + strand, within HMPREF1078_RS14995 at 52.568 kb on + strand, within HMPREF1078_RS14995 at 52.627 kb on - strand, within HMPREF1078_RS14995 at 52.641 kb on - strand, within HMPREF1078_RS14995 at 52.641 kb on - strand, within HMPREF1078_RS14995 at 52.734 kb on + strand, within HMPREF1078_RS14995 at 52.752 kb on + strand, within HMPREF1078_RS14995 at 52.753 kb on - strand, within HMPREF1078_RS14995 at 52.762 kb on - strand, within HMPREF1078_RS14995 at 52.762 kb on - strand, within HMPREF1078_RS14995 at 52.762 kb on - strand, within HMPREF1078_RS14995 at 52.763 kb on + strand, within HMPREF1078_RS14995 at 52.796 kb on - strand, within HMPREF1078_RS14995 at 52.861 kb on + strand, within HMPREF1078_RS14995 at 52.872 kb on + strand, within HMPREF1078_RS14995 at 52.875 kb on + strand, within HMPREF1078_RS14995 at 52.876 kb on - strand, within HMPREF1078_RS14995 at 52.944 kb on + strand, within HMPREF1078_RS14995 at 52.978 kb on + strand, within HMPREF1078_RS14995 at 53.001 kb on - strand, within HMPREF1078_RS14995 at 53.033 kb on + strand, within HMPREF1078_RS14995 at 53.052 kb on + strand, within HMPREF1078_RS14995 at 53.053 kb on - strand, within HMPREF1078_RS14995 at 53.053 kb on - strand, within HMPREF1078_RS14995 at 53.117 kb on - strand, within HMPREF1078_RS14995 at 53.117 kb on - strand, within HMPREF1078_RS14995 at 53.162 kb on + strand, within HMPREF1078_RS14995 at 53.266 kb on - strand, within HMPREF1078_RS14995 at 53.315 kb on - strand, within HMPREF1078_RS14995 at 53.325 kb on + strand, within HMPREF1078_RS14995 at 53.596 kb on - strand, within HMPREF1078_RS14995 at 53.615 kb on - strand, within HMPREF1078_RS14995 at 53.709 kb on - strand, within HMPREF1078_RS14995 at 53.711 kb on + strand, within HMPREF1078_RS14995 at 53.715 kb on + strand, within HMPREF1078_RS14995 at 53.716 kb on - strand, within HMPREF1078_RS14995 at 53.916 kb on - strand, within HMPREF1078_RS14995 at 53.964 kb on - strand, within HMPREF1078_RS14995 at 53.964 kb on - strand, within HMPREF1078_RS14995 at 53.978 kb on - strand, within HMPREF1078_RS14995 at 54.034 kb on + strand, within HMPREF1078_RS14995 at 54.034 kb on + strand, within HMPREF1078_RS14995 at 54.035 kb on - strand, within HMPREF1078_RS14995 at 54.179 kb on + strand, within HMPREF1078_RS14995 at 54.271 kb on + strand at 54.332 kb on + strand at 54.390 kb on - strand at 54.444 kb on + strand at 54.444 kb on + strand at 54.445 kb on - strand at 54.445 kb on - strand at 54.448 kb on + strand at 54.448 kb on + strand at 54.457 kb on + strand at 54.457 kb on + strand at 54.458 kb on - strand at 54.461 kb on + strand at 54.461 kb on + strand at 54.637 kb on - strand at 54.650 kb on - strand at 54.666 kb on + strand at 54.668 kb on + strand at 54.669 kb on - strand at 54.685 kb on + strand at 54.685 kb on + strand at 54.686 kb on - strand at 54.692 kb on + strand at 54.693 kb on - strand at 54.708 kb on + strand at 54.708 kb on + strand at 54.708 kb on + strand at 54.709 kb on - strand at 54.709 kb on - strand at 54.709 kb on - strand at 54.709 kb on - strand at 54.709 kb on - strand at 54.754 kb on + strand at 54.755 kb on - strand at 54.760 kb on - strand at 54.783 kb on - strand at 54.847 kb on + strand at 54.880 kb on + strand at 54.881 kb on - strand at 54.881 kb on - strand at 54.881 kb on - strand at 54.881 kb on - strand at 54.882 kb on + strand at 54.884 kb on + strand at 54.885 kb on - strand at 54.889 kb on - strand at 54.896 kb on - strand at 54.898 kb on - strand at 54.902 kb on - strand at 54.915 kb on + strand at 54.919 kb on + strand at 54.920 kb on - strand at 54.935 kb on + strand at 54.936 kb on - strand at 54.936 kb on - strand at 54.936 kb on - strand at 54.936 kb on - strand at 54.962 kb on - strand at 54.965 kb on + strand at 54.966 kb on - strand at 54.966 kb on - strand at 54.966 kb on - strand at 55.050 kb on + strand at 55.050 kb on + strand at 55.050 kb on + strand at 55.077 kb on + strand at 55.077 kb on + strand at 55.078 kb on - strand at 55.078 kb on - strand at 55.085 kb on + strand at 55.085 kb on + strand at 55.086 kb on - strand at 55.105 kb on + strand at 55.105 kb on + strand at 55.105 kb on + strand at 55.112 kb on - strand at 55.172 kb on - strand at 55.192 kb on + strand at 55.192 kb on + strand at 55.211 kb on + strand, within HMPREF1078_RS15005 at 55.211 kb on + strand, within HMPREF1078_RS15005 at 55.269 kb on + strand, within HMPREF1078_RS15005 at 55.270 kb on - strand, within HMPREF1078_RS15005 at 55.295 kb on + strand, within HMPREF1078_RS15005 at 55.296 kb on - strand, within HMPREF1078_RS15005 at 55.370 kb on - strand, within HMPREF1078_RS15005 at 55.421 kb on + strand, within HMPREF1078_RS15005 at 55.421 kb on + strand, within HMPREF1078_RS15005 at 55.422 kb on - strand, within HMPREF1078_RS15005
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 51,134 + HMPREF1078_RS14985 0.74 +0.8 51,135 - HMPREF1078_RS14985 0.74 -1.8 51,170 - -1.3 51,170 - +0.6 51,170 - +0.9 51,231 + -0.8 51,231 + +0.6 51,231 + -0.1 51,278 + HMPREF1078_RS14990 0.14 +1.3 51,279 - HMPREF1078_RS14990 0.14 +1.5 51,319 - HMPREF1078_RS14990 0.20 -0.2 51,319 - HMPREF1078_RS14990 0.20 -0.1 51,376 + HMPREF1078_RS14990 0.27 -2.4 51,377 - HMPREF1078_RS14990 0.27 +0.4 51,377 - HMPREF1078_RS14990 0.27 -1.5 51,377 - HMPREF1078_RS14990 0.27 -1.9 51,402 - HMPREF1078_RS14990 0.30 -0.2 51,461 - HMPREF1078_RS14990 0.38 -0.0 51,471 + HMPREF1078_RS14990 0.39 -0.2 51,472 - HMPREF1078_RS14990 0.39 -1.6 51,472 - HMPREF1078_RS14990 0.39 -1.2 51,472 - HMPREF1078_RS14990 0.39 -0.4 51,549 - HMPREF1078_RS14990 0.49 -0.9 51,580 - HMPREF1078_RS14990 0.53 -1.3 51,609 + HMPREF1078_RS14990 0.57 -0.4 51,610 - HMPREF1078_RS14990 0.57 -1.9 51,639 - HMPREF1078_RS14990 0.61 +1.6 51,690 + HMPREF1078_RS14990 0.68 +0.4 51,691 - HMPREF1078_RS14990 0.68 -0.0 51,691 - HMPREF1078_RS14990 0.68 -1.9 51,691 - HMPREF1078_RS14990 0.68 +0.2 51,887 - -2.0 51,913 + -0.2 51,951 + +0.8 51,964 + -1.0 51,965 - -0.2 51,983 - +0.5 52,003 + -1.1 52,003 + -1.7 52,049 + -0.3 52,105 - -1.6 52,140 - -5.0 52,153 - -1.9 52,171 - -0.1 52,171 - -1.5 52,214 + -0.7 52,422 - HMPREF1078_RS14995 0.15 +1.4 52,434 + HMPREF1078_RS14995 0.15 -1.2 52,436 + HMPREF1078_RS14995 0.15 -1.3 52,436 + HMPREF1078_RS14995 0.15 -2.6 52,437 - HMPREF1078_RS14995 0.15 -1.8 52,460 + HMPREF1078_RS14995 0.16 -2.1 52,461 - HMPREF1078_RS14995 0.16 -1.1 52,512 - HMPREF1078_RS14995 0.18 -1.3 52,536 + HMPREF1078_RS14995 0.19 -1.9 52,536 + HMPREF1078_RS14995 0.19 -1.7 52,559 + HMPREF1078_RS14995 0.20 +0.4 52,560 - HMPREF1078_RS14995 0.20 -2.7 52,563 + HMPREF1078_RS14995 0.21 +0.5 52,568 + HMPREF1078_RS14995 0.21 -1.9 52,568 + HMPREF1078_RS14995 0.21 -1.7 52,627 - HMPREF1078_RS14995 0.23 -2.9 52,641 - HMPREF1078_RS14995 0.24 -2.3 52,641 - HMPREF1078_RS14995 0.24 -0.5 52,734 + HMPREF1078_RS14995 0.28 -2.2 52,752 + HMPREF1078_RS14995 0.29 -2.6 52,753 - HMPREF1078_RS14995 0.29 -2.3 52,762 - HMPREF1078_RS14995 0.29 +0.7 52,762 - HMPREF1078_RS14995 0.29 -1.3 52,762 - HMPREF1078_RS14995 0.29 -1.1 52,763 + HMPREF1078_RS14995 0.29 -1.6 52,796 - HMPREF1078_RS14995 0.30 -1.4 52,861 + HMPREF1078_RS14995 0.33 -1.0 52,872 + HMPREF1078_RS14995 0.34 -0.8 52,875 + HMPREF1078_RS14995 0.34 -3.5 52,876 - HMPREF1078_RS14995 0.34 -1.0 52,944 + HMPREF1078_RS14995 0.37 -0.9 52,978 + HMPREF1078_RS14995 0.38 -1.7 53,001 - HMPREF1078_RS14995 0.39 -2.9 53,033 + HMPREF1078_RS14995 0.41 -1.3 53,052 + HMPREF1078_RS14995 0.41 -0.0 53,053 - HMPREF1078_RS14995 0.41 -2.8 53,053 - HMPREF1078_RS14995 0.41 -0.5 53,117 - HMPREF1078_RS14995 0.44 -1.4 53,117 - HMPREF1078_RS14995 0.44 -1.0 53,162 + HMPREF1078_RS14995 0.46 -3.2 53,266 - HMPREF1078_RS14995 0.50 -0.3 53,315 - HMPREF1078_RS14995 0.53 -3.2 53,325 + HMPREF1078_RS14995 0.53 -1.0 53,596 - HMPREF1078_RS14995 0.65 -0.4 53,615 - HMPREF1078_RS14995 0.65 -2.4 53,709 - HMPREF1078_RS14995 0.69 -0.5 53,711 + HMPREF1078_RS14995 0.69 -3.1 53,715 + HMPREF1078_RS14995 0.70 -4.2 53,716 - HMPREF1078_RS14995 0.70 -3.5 53,916 - HMPREF1078_RS14995 0.78 -2.5 53,964 - HMPREF1078_RS14995 0.80 -1.1 53,964 - HMPREF1078_RS14995 0.80 -2.1 53,978 - HMPREF1078_RS14995 0.81 -0.7 54,034 + HMPREF1078_RS14995 0.83 -1.7 54,034 + HMPREF1078_RS14995 0.83 -2.2 54,035 - HMPREF1078_RS14995 0.83 -0.7 54,179 + HMPREF1078_RS14995 0.89 -1.8 54,271 + -1.8 54,332 + -1.1 54,390 - -1.8 54,444 + +0.4 54,444 + -1.2 54,445 - -2.3 54,445 - -0.0 54,448 + -2.2 54,448 + -1.5 54,457 + -0.3 54,457 + -0.7 54,458 - +0.5 54,461 + -0.0 54,461 + +0.6 54,637 - +0.9 54,650 - -0.7 54,666 + -2.0 54,668 + -0.2 54,669 - -1.3 54,685 + +0.4 54,685 + -0.5 54,686 - -0.3 54,692 + +1.4 54,693 - +0.2 54,708 + +0.4 54,708 + +0.5 54,708 + +0.5 54,709 - -2.7 54,709 - +0.2 54,709 - -0.5 54,709 - +0.8 54,709 - -1.2 54,754 + -1.3 54,755 - -0.0 54,760 - -1.8 54,783 - -0.1 54,847 + -1.3 54,880 + -3.5 54,881 - +0.3 54,881 - +0.1 54,881 - -0.3 54,881 - +0.3 54,882 + +0.9 54,884 + -0.0 54,885 - +0.8 54,889 - +0.5 54,896 - +1.6 54,898 - +0.0 54,902 - +1.3 54,915 + +0.7 54,919 + +0.7 54,920 - +0.5 54,935 + -0.8 54,936 - -0.5 54,936 - +1.2 54,936 - -1.7 54,936 - -0.8 54,962 - +0.3 54,965 + +0.2 54,966 - +3.4 54,966 - +0.3 54,966 - -0.6 55,050 + +0.2 55,050 + +0.7 55,050 + -0.7 55,077 + -0.2 55,077 + -0.5 55,078 - -0.9 55,078 - +0.5 55,085 + -2.1 55,085 + +2.4 55,086 - +0.8 55,105 + +1.0 55,105 + -0.8 55,105 + +1.0 55,112 - -0.1 55,172 - +0.3 55,192 + +0.4 55,192 + -1.6 55,211 + HMPREF1078_RS15005 0.10 +0.3 55,211 + HMPREF1078_RS15005 0.10 +1.1 55,269 + HMPREF1078_RS15005 0.13 +0.2 55,270 - HMPREF1078_RS15005 0.14 +2.2 55,295 + HMPREF1078_RS15005 0.15 -1.7 55,296 - HMPREF1078_RS15005 0.15 +0.9 55,370 - HMPREF1078_RS15005 0.19 +0.3 55,421 + HMPREF1078_RS15005 0.22 -0.5 55,421 + HMPREF1078_RS15005 0.22 -1.2 55,422 - HMPREF1078_RS15005 0.22 +1.2
Or see this region's nucleotide sequence