Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14600 and HMPREF1078_RS14605 are separated by 10 nucleotides HMPREF1078_RS14605 and HMPREF1078_RS14610 are separated by 55 nucleotides HMPREF1078_RS14610 and HMPREF1078_RS14615 are separated by 76 nucleotides HMPREF1078_RS14615 and HMPREF1078_RS14620 are separated by 135 nucleotides
HMPREF1078_RS14600: HMPREF1078_RS14600 - tRNA-Gly, at 417,305 to 417,377
_RS14600
HMPREF1078_RS14605: HMPREF1078_RS14605 - tRNA-Tyr, at 417,388 to 417,470
_RS14605
HMPREF1078_RS14610: HMPREF1078_RS14610 - 6,7-dimethyl-8-ribityllumazine synthase, at 417,526 to 418,008
_RS14610
HMPREF1078_RS14615: HMPREF1078_RS14615 - tetratricopeptide repeat protein, at 418,085 to 418,771
_RS14615
HMPREF1078_RS14620: HMPREF1078_RS14620 - DNA replication and repair protein RecF, at 418,907 to 420,010
_RS14620
Position (kb) 418
419 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 417.091 kb on + strand at 417.139 kb on + strand at 417.139 kb on + strand at 417.139 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.142 kb on - strand at 417.142 kb on - strand at 417.142 kb on - strand at 417.142 kb on - strand at 417.142 kb on - strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.147 kb on + strand at 417.147 kb on + strand at 417.147 kb on + strand at 417.147 kb on + strand at 417.147 kb on + strand at 417.147 kb on + strand at 417.148 kb on - strand at 417.148 kb on - strand at 417.148 kb on - strand at 417.148 kb on - strand at 417.148 kb on - strand at 417.148 kb on - strand at 417.178 kb on + strand at 417.178 kb on + strand at 417.179 kb on - strand at 417.180 kb on + strand at 417.181 kb on - strand at 417.181 kb on - strand at 417.181 kb on - strand at 417.212 kb on + strand at 417.212 kb on + strand at 417.212 kb on + strand at 417.213 kb on - strand at 417.243 kb on + strand at 417.244 kb on - strand at 417.244 kb on - strand at 417.244 kb on - strand at 417.247 kb on + strand at 417.247 kb on + strand at 417.248 kb on - strand at 417.248 kb on - strand at 417.369 kb on + strand, within HMPREF1078_RS14600 at 417.499 kb on - strand at 418.060 kb on - strand at 418.060 kb on - strand at 418.062 kb on - strand at 418.062 kb on - strand at 418.062 kb on - strand at 418.062 kb on - strand at 418.068 kb on - strand at 418.068 kb on - strand at 418.068 kb on - strand at 418.070 kb on - strand at 418.080 kb on - strand at 418.080 kb on - strand at 418.080 kb on - strand at 418.080 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.087 kb on - strand at 418.087 kb on - strand at 418.087 kb on - strand at 418.087 kb on - strand at 418.115 kb on - strand at 418.115 kb on - strand at 418.115 kb on - strand at 418.117 kb on - strand at 418.117 kb on - strand at 418.117 kb on - strand at 418.174 kb on - strand, within HMPREF1078_RS14615 at 418.320 kb on - strand, within HMPREF1078_RS14615 at 418.324 kb on - strand, within HMPREF1078_RS14615 at 418.324 kb on - strand, within HMPREF1078_RS14615 at 418.324 kb on - strand, within HMPREF1078_RS14615 at 418.429 kb on - strand, within HMPREF1078_RS14615 at 418.580 kb on - strand, within HMPREF1078_RS14615 at 418.615 kb on - strand, within HMPREF1078_RS14615 at 418.662 kb on - strand, within HMPREF1078_RS14615 at 418.789 kb on - strand at 418.797 kb on - strand at 418.797 kb on - strand at 418.894 kb on + strand at 418.897 kb on + strand at 418.927 kb on + strand at 418.980 kb on + strand at 419.039 kb on + strand, within HMPREF1078_RS14620 at 419.068 kb on + strand, within HMPREF1078_RS14620 at 419.069 kb on - strand, within HMPREF1078_RS14620 at 419.122 kb on + strand, within HMPREF1078_RS14620 at 419.122 kb on + strand, within HMPREF1078_RS14620 at 419.123 kb on - strand, within HMPREF1078_RS14620 at 419.123 kb on - strand, within HMPREF1078_RS14620 at 419.126 kb on + strand, within HMPREF1078_RS14620 at 419.126 kb on + strand, within HMPREF1078_RS14620 at 419.126 kb on + strand, within HMPREF1078_RS14620 at 419.132 kb on + strand, within HMPREF1078_RS14620 at 419.200 kb on + strand, within HMPREF1078_RS14620 at 419.280 kb on + strand, within HMPREF1078_RS14620 at 419.345 kb on + strand, within HMPREF1078_RS14620 at 419.361 kb on + strand, within HMPREF1078_RS14620 at 419.368 kb on + strand, within HMPREF1078_RS14620 at 419.459 kb on + strand, within HMPREF1078_RS14620 at 419.474 kb on + strand, within HMPREF1078_RS14620 at 419.474 kb on + strand, within HMPREF1078_RS14620 at 419.501 kb on + strand, within HMPREF1078_RS14620 at 419.525 kb on + strand, within HMPREF1078_RS14620 at 419.570 kb on + strand, within HMPREF1078_RS14620 at 419.572 kb on + strand, within HMPREF1078_RS14620 at 419.572 kb on + strand, within HMPREF1078_RS14620 at 419.647 kb on + strand, within HMPREF1078_RS14620 at 419.738 kb on + strand, within HMPREF1078_RS14620 at 419.765 kb on + strand, within HMPREF1078_RS14620 at 419.765 kb on + strand, within HMPREF1078_RS14620
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 417,091 + -0.4 417,139 + -2.7 417,139 + +2.2 417,139 + +0.6 417,141 + -0.6 417,141 + -1.1 417,141 + -0.2 417,141 + +0.4 417,141 + +0.1 417,141 + -2.1 417,141 + +0.4 417,141 + -0.4 417,141 + +0.5 417,141 + -1.3 417,141 + +0.5 417,141 + -1.4 417,141 + -1.0 417,142 - +0.5 417,142 - -0.6 417,142 - -0.6 417,142 - -1.6 417,142 - +0.6 417,145 + +0.5 417,145 + -0.3 417,145 + +0.4 417,145 + +0.5 417,145 + -0.7 417,145 + +0.1 417,145 + +0.0 417,145 + -2.2 417,145 + -0.7 417,145 + -1.0 417,145 + +0.0 417,145 + -1.9 417,145 + -0.4 417,145 + -1.4 417,145 + -1.4 417,146 - -0.1 417,146 - -0.2 417,146 - +0.4 417,146 - +0.6 417,146 - +0.5 417,146 - -1.5 417,146 - -1.8 417,146 - +0.3 417,146 - +0.5 417,146 - +0.5 417,147 + -0.1 417,147 + +1.5 417,147 + -1.2 417,147 + -0.6 417,147 + -1.5 417,147 + -0.2 417,148 - -0.4 417,148 - -0.9 417,148 - -2.8 417,148 - -2.1 417,148 - -1.4 417,148 - +0.8 417,178 + -0.2 417,178 + +0.2 417,179 - +0.1 417,180 + +0.7 417,181 - -2.1 417,181 - +1.5 417,181 - +0.5 417,212 + +1.4 417,212 + -0.9 417,212 + +1.0 417,213 - +1.0 417,243 + -0.1 417,244 - +0.5 417,244 - -0.0 417,244 - -1.7 417,247 + -0.2 417,247 + -0.9 417,248 - +1.6 417,248 - +0.9 417,369 + HMPREF1078_RS14600 0.88 +0.1 417,499 - -0.7 418,060 - -0.8 418,060 - +1.5 418,062 - +1.5 418,062 - +0.9 418,062 - +0.3 418,062 - -0.3 418,068 - -0.1 418,068 - +0.5 418,068 - -1.8 418,070 - -0.3 418,080 - -0.2 418,080 - +0.2 418,080 - +0.3 418,080 - +0.8 418,082 - -2.2 418,082 - +1.0 418,082 - +0.1 418,082 - -1.2 418,082 - -0.7 418,082 - -0.1 418,082 - +0.3 418,087 - +0.2 418,087 - -0.5 418,087 - -0.1 418,087 - -1.3 418,115 - -0.5 418,115 - -1.5 418,115 - -2.3 418,117 - +0.3 418,117 - +0.8 418,117 - -0.5 418,174 - HMPREF1078_RS14615 0.13 -0.7 418,320 - HMPREF1078_RS14615 0.34 +1.0 418,324 - HMPREF1078_RS14615 0.35 -0.9 418,324 - HMPREF1078_RS14615 0.35 +2.8 418,324 - HMPREF1078_RS14615 0.35 +1.8 418,429 - HMPREF1078_RS14615 0.50 +0.5 418,580 - HMPREF1078_RS14615 0.72 -0.2 418,615 - HMPREF1078_RS14615 0.77 +0.2 418,662 - HMPREF1078_RS14615 0.84 -1.5 418,789 - -2.4 418,797 - +0.4 418,797 - -0.2 418,894 + +0.8 418,897 + -0.4 418,927 + -0.7 418,980 + -1.2 419,039 + HMPREF1078_RS14620 0.12 -1.5 419,068 + HMPREF1078_RS14620 0.15 -2.5 419,069 - HMPREF1078_RS14620 0.15 -0.9 419,122 + HMPREF1078_RS14620 0.19 -2.8 419,122 + HMPREF1078_RS14620 0.19 -2.0 419,123 - HMPREF1078_RS14620 0.20 +1.2 419,123 - HMPREF1078_RS14620 0.20 -0.0 419,126 + HMPREF1078_RS14620 0.20 -1.3 419,126 + HMPREF1078_RS14620 0.20 -0.5 419,126 + HMPREF1078_RS14620 0.20 -0.4 419,132 + HMPREF1078_RS14620 0.20 -3.1 419,200 + HMPREF1078_RS14620 0.27 -0.9 419,280 + HMPREF1078_RS14620 0.34 -0.8 419,345 + HMPREF1078_RS14620 0.40 -1.9 419,361 + HMPREF1078_RS14620 0.41 -0.5 419,368 + HMPREF1078_RS14620 0.42 -1.5 419,459 + HMPREF1078_RS14620 0.50 +0.2 419,474 + HMPREF1078_RS14620 0.51 -1.8 419,474 + HMPREF1078_RS14620 0.51 -2.2 419,501 + HMPREF1078_RS14620 0.54 +1.8 419,525 + HMPREF1078_RS14620 0.56 -0.9 419,570 + HMPREF1078_RS14620 0.60 -2.0 419,572 + HMPREF1078_RS14620 0.60 +0.6 419,572 + HMPREF1078_RS14620 0.60 -0.2 419,647 + HMPREF1078_RS14620 0.67 -1.7 419,738 + HMPREF1078_RS14620 0.75 -1.7 419,765 + HMPREF1078_RS14620 0.78 -0.4 419,765 + HMPREF1078_RS14620 0.78 +0.6
Or see this region's nucleotide sequence