Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14280 and HMPREF1078_RS14285 are separated by 85 nucleotides HMPREF1078_RS14285 and HMPREF1078_RS14290 are separated by 219 nucleotides
HMPREF1078_RS14280: HMPREF1078_RS14280 - alkaline phosphatase family protein, at 333,754 to 334,701
_RS14280
HMPREF1078_RS14285: HMPREF1078_RS14285 - IMP dehydrogenase, at 334,787 to 336,280
_RS14285
HMPREF1078_RS14290: HMPREF1078_RS14290 - pirin family protein, at 336,500 to 337,207
_RS14290
Position (kb) 334
335
336
337 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 333.809 kb on + strand at 333.903 kb on + strand, within HMPREF1078_RS14280 at 333.903 kb on + strand, within HMPREF1078_RS14280 at 333.904 kb on - strand, within HMPREF1078_RS14280 at 333.993 kb on + strand, within HMPREF1078_RS14280 at 334.111 kb on - strand, within HMPREF1078_RS14280 at 334.127 kb on - strand, within HMPREF1078_RS14280 at 334.127 kb on - strand, within HMPREF1078_RS14280 at 334.216 kb on + strand, within HMPREF1078_RS14280 at 334.218 kb on + strand, within HMPREF1078_RS14280 at 334.246 kb on + strand, within HMPREF1078_RS14280 at 334.264 kb on + strand, within HMPREF1078_RS14280 at 334.264 kb on + strand, within HMPREF1078_RS14280 at 334.265 kb on - strand, within HMPREF1078_RS14280 at 334.265 kb on - strand, within HMPREF1078_RS14280 at 334.328 kb on + strand, within HMPREF1078_RS14280 at 334.371 kb on + strand, within HMPREF1078_RS14280 at 334.371 kb on + strand, within HMPREF1078_RS14280 at 334.392 kb on + strand, within HMPREF1078_RS14280 at 334.392 kb on + strand, within HMPREF1078_RS14280 at 334.392 kb on + strand, within HMPREF1078_RS14280 at 334.393 kb on - strand, within HMPREF1078_RS14280 at 334.463 kb on - strand, within HMPREF1078_RS14280 at 334.463 kb on - strand, within HMPREF1078_RS14280 at 334.463 kb on - strand, within HMPREF1078_RS14280 at 334.464 kb on + strand, within HMPREF1078_RS14280 at 334.464 kb on + strand, within HMPREF1078_RS14280 at 334.465 kb on - strand, within HMPREF1078_RS14280 at 334.465 kb on - strand, within HMPREF1078_RS14280 at 334.531 kb on - strand, within HMPREF1078_RS14280 at 334.575 kb on - strand, within HMPREF1078_RS14280 at 334.617 kb on + strand at 334.626 kb on + strand at 334.626 kb on + strand at 334.627 kb on - strand at 334.627 kb on - strand at 334.679 kb on + strand at 334.680 kb on - strand at 334.682 kb on + strand at 334.683 kb on - strand at 334.683 kb on - strand at 334.683 kb on - strand at 334.692 kb on - strand at 334.699 kb on + strand at 334.706 kb on + strand at 334.707 kb on - strand at 334.717 kb on - strand at 334.726 kb on + strand at 334.738 kb on - strand at 334.766 kb on + strand at 334.776 kb on + strand at 334.891 kb on + strand at 334.891 kb on + strand at 334.966 kb on - strand, within HMPREF1078_RS14285 at 334.974 kb on + strand, within HMPREF1078_RS14285 at 334.974 kb on + strand, within HMPREF1078_RS14285 at 334.975 kb on - strand, within HMPREF1078_RS14285 at 334.975 kb on - strand, within HMPREF1078_RS14285 at 334.975 kb on - strand, within HMPREF1078_RS14285 at 334.975 kb on - strand, within HMPREF1078_RS14285 at 334.975 kb on - strand, within HMPREF1078_RS14285 at 334.975 kb on - strand, within HMPREF1078_RS14285 at 335.000 kb on - strand, within HMPREF1078_RS14285 at 335.087 kb on - strand, within HMPREF1078_RS14285 at 335.134 kb on - strand, within HMPREF1078_RS14285 at 335.134 kb on - strand, within HMPREF1078_RS14285 at 335.187 kb on + strand, within HMPREF1078_RS14285 at 335.188 kb on - strand, within HMPREF1078_RS14285 at 335.226 kb on + strand, within HMPREF1078_RS14285 at 335.226 kb on + strand, within HMPREF1078_RS14285 at 335.227 kb on - strand, within HMPREF1078_RS14285 at 335.227 kb on - strand, within HMPREF1078_RS14285 at 335.227 kb on - strand, within HMPREF1078_RS14285 at 335.230 kb on + strand, within HMPREF1078_RS14285 at 335.230 kb on + strand, within HMPREF1078_RS14285 at 335.230 kb on + strand, within HMPREF1078_RS14285 at 335.231 kb on - strand, within HMPREF1078_RS14285 at 335.511 kb on - strand, within HMPREF1078_RS14285 at 335.511 kb on - strand, within HMPREF1078_RS14285 at 335.511 kb on - strand, within HMPREF1078_RS14285 at 335.551 kb on + strand, within HMPREF1078_RS14285 at 335.554 kb on - strand, within HMPREF1078_RS14285 at 335.580 kb on - strand, within HMPREF1078_RS14285 at 335.613 kb on + strand, within HMPREF1078_RS14285 at 335.658 kb on + strand, within HMPREF1078_RS14285 at 335.894 kb on - strand, within HMPREF1078_RS14285 at 335.912 kb on + strand, within HMPREF1078_RS14285 at 335.924 kb on + strand, within HMPREF1078_RS14285 at 336.025 kb on + strand, within HMPREF1078_RS14285 at 336.218 kb on + strand at 336.237 kb on + strand at 336.257 kb on + strand at 336.257 kb on + strand at 336.258 kb on - strand at 336.258 kb on - strand at 336.258 kb on - strand at 336.288 kb on - strand at 336.289 kb on + strand at 336.307 kb on - strand at 336.337 kb on + strand at 336.337 kb on + strand at 336.337 kb on + strand at 336.345 kb on - strand at 336.469 kb on + strand at 336.470 kb on - strand at 336.470 kb on - strand at 336.496 kb on - strand at 336.526 kb on - strand at 336.574 kb on + strand, within HMPREF1078_RS14290 at 336.588 kb on - strand, within HMPREF1078_RS14290 at 336.591 kb on - strand, within HMPREF1078_RS14290 at 336.667 kb on + strand, within HMPREF1078_RS14290 at 336.679 kb on + strand, within HMPREF1078_RS14290 at 336.679 kb on + strand, within HMPREF1078_RS14290 at 336.679 kb on + strand, within HMPREF1078_RS14290 at 336.821 kb on - strand, within HMPREF1078_RS14290 at 336.891 kb on - strand, within HMPREF1078_RS14290 at 336.892 kb on + strand, within HMPREF1078_RS14290 at 336.892 kb on + strand, within HMPREF1078_RS14290 at 336.893 kb on - strand, within HMPREF1078_RS14290 at 336.893 kb on - strand, within HMPREF1078_RS14290 at 336.899 kb on + strand, within HMPREF1078_RS14290 at 336.899 kb on + strand, within HMPREF1078_RS14290 at 336.899 kb on + strand, within HMPREF1078_RS14290 at 336.899 kb on + strand, within HMPREF1078_RS14290 at 336.900 kb on - strand, within HMPREF1078_RS14290 at 336.900 kb on - strand, within HMPREF1078_RS14290 at 337.003 kb on + strand, within HMPREF1078_RS14290 at 337.004 kb on - strand, within HMPREF1078_RS14290 at 337.031 kb on + strand, within HMPREF1078_RS14290 at 337.155 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 333,809 + -0.1 333,903 + HMPREF1078_RS14280 0.16 -0.6 333,903 + HMPREF1078_RS14280 0.16 -0.3 333,904 - HMPREF1078_RS14280 0.16 +0.6 333,993 + HMPREF1078_RS14280 0.25 -0.5 334,111 - HMPREF1078_RS14280 0.38 -1.5 334,127 - HMPREF1078_RS14280 0.39 -1.7 334,127 - HMPREF1078_RS14280 0.39 -0.1 334,216 + HMPREF1078_RS14280 0.49 -0.9 334,218 + HMPREF1078_RS14280 0.49 +0.0 334,246 + HMPREF1078_RS14280 0.52 -2.9 334,264 + HMPREF1078_RS14280 0.54 -1.0 334,264 + HMPREF1078_RS14280 0.54 +0.4 334,265 - HMPREF1078_RS14280 0.54 +0.6 334,265 - HMPREF1078_RS14280 0.54 +0.0 334,328 + HMPREF1078_RS14280 0.61 +0.1 334,371 + HMPREF1078_RS14280 0.65 -0.4 334,371 + HMPREF1078_RS14280 0.65 -0.7 334,392 + HMPREF1078_RS14280 0.67 -1.4 334,392 + HMPREF1078_RS14280 0.67 +0.1 334,392 + HMPREF1078_RS14280 0.67 -2.5 334,393 - HMPREF1078_RS14280 0.67 -1.2 334,463 - HMPREF1078_RS14280 0.75 +0.2 334,463 - HMPREF1078_RS14280 0.75 -2.5 334,463 - HMPREF1078_RS14280 0.75 -0.3 334,464 + HMPREF1078_RS14280 0.75 -0.0 334,464 + HMPREF1078_RS14280 0.75 -0.4 334,465 - HMPREF1078_RS14280 0.75 +1.2 334,465 - HMPREF1078_RS14280 0.75 -0.8 334,531 - HMPREF1078_RS14280 0.82 -1.5 334,575 - HMPREF1078_RS14280 0.87 -1.1 334,617 + -1.1 334,626 + -1.8 334,626 + +1.6 334,627 - +0.4 334,627 - +1.3 334,679 + -0.2 334,680 - -0.1 334,682 + +0.2 334,683 - +0.5 334,683 - +0.1 334,683 - -0.7 334,692 - -1.2 334,699 + -0.1 334,706 + -1.8 334,707 - +0.6 334,717 - +0.0 334,726 + +0.1 334,738 - -1.5 334,766 + -0.6 334,776 + -0.4 334,891 + -3.1 334,891 + -0.7 334,966 - HMPREF1078_RS14285 0.12 -0.0 334,974 + HMPREF1078_RS14285 0.13 -3.4 334,974 + HMPREF1078_RS14285 0.13 +1.8 334,975 - HMPREF1078_RS14285 0.13 -2.6 334,975 - HMPREF1078_RS14285 0.13 -3.0 334,975 - HMPREF1078_RS14285 0.13 -1.9 334,975 - HMPREF1078_RS14285 0.13 +1.2 334,975 - HMPREF1078_RS14285 0.13 -1.7 334,975 - HMPREF1078_RS14285 0.13 -0.5 335,000 - HMPREF1078_RS14285 0.14 -0.4 335,087 - HMPREF1078_RS14285 0.20 -0.5 335,134 - HMPREF1078_RS14285 0.23 -0.7 335,134 - HMPREF1078_RS14285 0.23 -1.6 335,187 + HMPREF1078_RS14285 0.27 -1.5 335,188 - HMPREF1078_RS14285 0.27 -1.4 335,226 + HMPREF1078_RS14285 0.29 +0.5 335,226 + HMPREF1078_RS14285 0.29 +0.5 335,227 - HMPREF1078_RS14285 0.29 -1.3 335,227 - HMPREF1078_RS14285 0.29 -1.4 335,227 - HMPREF1078_RS14285 0.29 -1.5 335,230 + HMPREF1078_RS14285 0.30 -2.7 335,230 + HMPREF1078_RS14285 0.30 -0.1 335,230 + HMPREF1078_RS14285 0.30 -2.3 335,231 - HMPREF1078_RS14285 0.30 -0.9 335,511 - HMPREF1078_RS14285 0.48 -1.5 335,511 - HMPREF1078_RS14285 0.48 -0.9 335,511 - HMPREF1078_RS14285 0.48 -1.2 335,551 + HMPREF1078_RS14285 0.51 -2.2 335,554 - HMPREF1078_RS14285 0.51 -2.4 335,580 - HMPREF1078_RS14285 0.53 -0.1 335,613 + HMPREF1078_RS14285 0.55 -1.7 335,658 + HMPREF1078_RS14285 0.58 -0.8 335,894 - HMPREF1078_RS14285 0.74 +0.5 335,912 + HMPREF1078_RS14285 0.75 -1.7 335,924 + HMPREF1078_RS14285 0.76 -1.7 336,025 + HMPREF1078_RS14285 0.83 +1.2 336,218 + -1.2 336,237 + -1.2 336,257 + -2.2 336,257 + -1.4 336,258 - -2.4 336,258 - -1.6 336,258 - -0.7 336,288 - -1.1 336,289 + -0.9 336,307 - -0.2 336,337 + -2.0 336,337 + -4.3 336,337 + -1.9 336,345 - +0.9 336,469 + -0.3 336,470 - -1.5 336,470 - -0.7 336,496 - -0.1 336,526 - +0.3 336,574 + HMPREF1078_RS14290 0.10 -0.1 336,588 - HMPREF1078_RS14290 0.12 -1.8 336,591 - HMPREF1078_RS14290 0.13 +0.4 336,667 + HMPREF1078_RS14290 0.24 -3.0 336,679 + HMPREF1078_RS14290 0.25 +0.9 336,679 + HMPREF1078_RS14290 0.25 -2.8 336,679 + HMPREF1078_RS14290 0.25 -1.0 336,821 - HMPREF1078_RS14290 0.45 -0.1 336,891 - HMPREF1078_RS14290 0.55 +1.2 336,892 + HMPREF1078_RS14290 0.55 +1.2 336,892 + HMPREF1078_RS14290 0.55 +0.7 336,893 - HMPREF1078_RS14290 0.56 -2.0 336,893 - HMPREF1078_RS14290 0.56 -1.5 336,899 + HMPREF1078_RS14290 0.56 +0.2 336,899 + HMPREF1078_RS14290 0.56 -0.5 336,899 + HMPREF1078_RS14290 0.56 -0.0 336,899 + HMPREF1078_RS14290 0.56 +1.6 336,900 - HMPREF1078_RS14290 0.56 +0.1 336,900 - HMPREF1078_RS14290 0.56 -0.7 337,003 + HMPREF1078_RS14290 0.71 +1.8 337,004 - HMPREF1078_RS14290 0.71 +1.1 337,031 + HMPREF1078_RS14290 0.75 -0.8 337,155 + +2.2
Or see this region's nucleotide sequence