Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13565 and HMPREF1078_RS13570 are separated by 18 nucleotides HMPREF1078_RS13570 and HMPREF1078_RS13575 are separated by 6 nucleotides HMPREF1078_RS13575 and HMPREF1078_RS13580 are separated by 769 nucleotides
HMPREF1078_RS13565: HMPREF1078_RS13565 - imidazole glycerol phosphate synthase subunit HisF, at 159,772 to 160,527
_RS13565
HMPREF1078_RS13570: HMPREF1078_RS13570 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 160,546 to 161,265
_RS13570
HMPREF1078_RS13575: HMPREF1078_RS13575 - imidazole glycerol phosphate synthase subunit HisH, at 161,272 to 161,862
_RS13575
HMPREF1078_RS13580: HMPREF1078_RS13580 - tRNA-Asp, at 162,632 to 162,705
_RS13580
Position (kb) 161
162 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 160.350 kb on + strand, within HMPREF1078_RS13565 at 160.373 kb on - strand, within HMPREF1078_RS13565 at 160.373 kb on - strand, within HMPREF1078_RS13565 at 160.375 kb on - strand, within HMPREF1078_RS13565 at 160.383 kb on - strand, within HMPREF1078_RS13565 at 160.383 kb on - strand, within HMPREF1078_RS13565 at 160.384 kb on + strand, within HMPREF1078_RS13565 at 160.385 kb on - strand, within HMPREF1078_RS13565 at 160.412 kb on + strand, within HMPREF1078_RS13565 at 160.413 kb on - strand, within HMPREF1078_RS13565 at 160.493 kb on - strand at 160.510 kb on + strand at 160.511 kb on - strand at 160.511 kb on - strand at 160.511 kb on - strand at 160.511 kb on - strand at 160.527 kb on + strand at 160.527 kb on + strand at 160.528 kb on - strand at 160.528 kb on - strand at 160.528 kb on - strand at 160.530 kb on - strand at 160.531 kb on + strand at 160.531 kb on + strand at 160.539 kb on - strand at 160.544 kb on + strand at 160.545 kb on - strand at 160.576 kb on + strand at 160.645 kb on - strand, within HMPREF1078_RS13570 at 160.645 kb on - strand, within HMPREF1078_RS13570 at 160.651 kb on + strand, within HMPREF1078_RS13570 at 160.652 kb on - strand, within HMPREF1078_RS13570 at 160.653 kb on + strand, within HMPREF1078_RS13570 at 160.653 kb on + strand, within HMPREF1078_RS13570 at 160.663 kb on - strand, within HMPREF1078_RS13570 at 160.663 kb on - strand, within HMPREF1078_RS13570 at 160.693 kb on + strand, within HMPREF1078_RS13570 at 160.694 kb on - strand, within HMPREF1078_RS13570 at 160.694 kb on - strand, within HMPREF1078_RS13570 at 160.705 kb on + strand, within HMPREF1078_RS13570 at 160.713 kb on + strand, within HMPREF1078_RS13570 at 160.716 kb on - strand, within HMPREF1078_RS13570 at 160.717 kb on + strand, within HMPREF1078_RS13570 at 160.717 kb on + strand, within HMPREF1078_RS13570 at 160.717 kb on + strand, within HMPREF1078_RS13570 at 160.718 kb on - strand, within HMPREF1078_RS13570 at 160.718 kb on - strand, within HMPREF1078_RS13570 at 160.743 kb on + strand, within HMPREF1078_RS13570 at 160.744 kb on - strand, within HMPREF1078_RS13570 at 160.783 kb on - strand, within HMPREF1078_RS13570 at 160.797 kb on - strand, within HMPREF1078_RS13570 at 160.827 kb on - strand, within HMPREF1078_RS13570 at 160.928 kb on - strand, within HMPREF1078_RS13570 at 161.047 kb on - strand, within HMPREF1078_RS13570 at 161.047 kb on - strand, within HMPREF1078_RS13570 at 161.070 kb on + strand, within HMPREF1078_RS13570 at 161.070 kb on + strand, within HMPREF1078_RS13570 at 161.075 kb on + strand, within HMPREF1078_RS13570 at 161.075 kb on + strand, within HMPREF1078_RS13570 at 161.076 kb on - strand, within HMPREF1078_RS13570 at 161.076 kb on - strand, within HMPREF1078_RS13570 at 161.076 kb on - strand, within HMPREF1078_RS13570 at 161.076 kb on - strand, within HMPREF1078_RS13570 at 161.076 kb on - strand, within HMPREF1078_RS13570 at 161.198 kb on + strand at 161.198 kb on + strand at 161.199 kb on - strand at 161.199 kb on - strand at 161.219 kb on - strand at 161.238 kb on + strand at 161.239 kb on - strand at 161.239 kb on - strand at 161.242 kb on + strand at 161.242 kb on + strand at 161.242 kb on + strand at 161.242 kb on + strand at 161.243 kb on - strand at 161.243 kb on - strand at 161.265 kb on + strand at 161.266 kb on - strand at 161.268 kb on + strand at 161.269 kb on - strand at 161.269 kb on - strand at 161.274 kb on - strand at 161.293 kb on + strand at 161.294 kb on - strand at 161.296 kb on + strand at 161.297 kb on - strand at 161.297 kb on - strand at 161.298 kb on + strand at 161.299 kb on - strand at 161.299 kb on - strand at 161.385 kb on + strand, within HMPREF1078_RS13575 at 161.386 kb on - strand, within HMPREF1078_RS13575 at 161.386 kb on - strand, within HMPREF1078_RS13575 at 161.387 kb on + strand, within HMPREF1078_RS13575 at 161.388 kb on - strand, within HMPREF1078_RS13575 at 161.422 kb on + strand, within HMPREF1078_RS13575 at 161.426 kb on + strand, within HMPREF1078_RS13575 at 161.426 kb on + strand, within HMPREF1078_RS13575 at 161.426 kb on + strand, within HMPREF1078_RS13575 at 161.427 kb on - strand, within HMPREF1078_RS13575 at 161.427 kb on - strand, within HMPREF1078_RS13575 at 161.427 kb on - strand, within HMPREF1078_RS13575 at 161.429 kb on + strand, within HMPREF1078_RS13575 at 161.430 kb on - strand, within HMPREF1078_RS13575 at 161.430 kb on - strand, within HMPREF1078_RS13575 at 161.430 kb on - strand, within HMPREF1078_RS13575 at 161.433 kb on + strand, within HMPREF1078_RS13575 at 161.433 kb on + strand, within HMPREF1078_RS13575 at 161.433 kb on + strand, within HMPREF1078_RS13575 at 161.433 kb on + strand, within HMPREF1078_RS13575 at 161.438 kb on - strand, within HMPREF1078_RS13575 at 161.497 kb on - strand, within HMPREF1078_RS13575 at 161.526 kb on + strand, within HMPREF1078_RS13575 at 161.667 kb on + strand, within HMPREF1078_RS13575 at 161.667 kb on + strand, within HMPREF1078_RS13575 at 161.674 kb on - strand, within HMPREF1078_RS13575 at 161.674 kb on - strand, within HMPREF1078_RS13575 at 161.678 kb on - strand, within HMPREF1078_RS13575 at 161.678 kb on - strand, within HMPREF1078_RS13575 at 161.678 kb on - strand, within HMPREF1078_RS13575 at 161.678 kb on - strand, within HMPREF1078_RS13575 at 161.682 kb on + strand, within HMPREF1078_RS13575 at 161.709 kb on + strand, within HMPREF1078_RS13575 at 161.737 kb on + strand, within HMPREF1078_RS13575 at 161.752 kb on - strand, within HMPREF1078_RS13575 at 161.755 kb on + strand, within HMPREF1078_RS13575 at 161.755 kb on + strand, within HMPREF1078_RS13575 at 161.755 kb on + strand, within HMPREF1078_RS13575 at 161.756 kb on - strand, within HMPREF1078_RS13575 at 161.756 kb on - strand, within HMPREF1078_RS13575 at 161.782 kb on - strand, within HMPREF1078_RS13575 at 161.823 kb on - strand at 161.823 kb on - strand at 161.823 kb on - strand at 161.848 kb on - strand at 161.918 kb on - strand at 161.920 kb on - strand at 162.049 kb on + strand at 162.049 kb on + strand at 162.050 kb on - strand at 162.051 kb on - strand at 162.080 kb on - strand at 162.186 kb on + strand at 162.191 kb on + strand at 162.191 kb on + strand at 162.191 kb on + strand at 162.191 kb on + strand at 162.191 kb on + strand at 162.194 kb on + strand at 162.194 kb on + strand at 162.194 kb on + strand at 162.215 kb on + strand at 162.252 kb on - strand at 162.477 kb on + strand at 162.500 kb on - strand at 162.514 kb on + strand at 162.549 kb on + strand at 162.551 kb on + strand at 162.568 kb on + strand at 162.612 kb on + strand at 162.612 kb on + strand at 162.619 kb on + strand at 162.624 kb on - strand at 162.719 kb on + strand at 162.719 kb on + strand at 162.719 kb on + strand at 162.767 kb on + strand at 162.791 kb on + strand at 162.800 kb on - strand at 162.801 kb on + strand at 162.801 kb on + strand at 162.825 kb on + strand at 162.825 kb on + strand at 162.825 kb on + strand at 162.826 kb on - strand at 162.826 kb on - strand at 162.827 kb on + strand at 162.827 kb on + strand at 162.827 kb on - strand at 162.840 kb on + strand at 162.840 kb on + strand at 162.840 kb on + strand at 162.840 kb on + strand at 162.841 kb on - strand at 162.841 kb on - strand at 162.844 kb on + strand at 162.844 kb on + strand at 162.844 kb on + strand at 162.845 kb on - strand at 162.845 kb on - strand at 162.859 kb on + strand at 162.859 kb on + strand at 162.860 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 160,350 + HMPREF1078_RS13565 0.76 -0.3 160,373 - HMPREF1078_RS13565 0.79 -1.1 160,373 - HMPREF1078_RS13565 0.79 -1.1 160,375 - HMPREF1078_RS13565 0.80 -1.8 160,383 - HMPREF1078_RS13565 0.81 -3.4 160,383 - HMPREF1078_RS13565 0.81 -4.1 160,384 + HMPREF1078_RS13565 0.81 -2.5 160,385 - HMPREF1078_RS13565 0.81 -0.3 160,412 + HMPREF1078_RS13565 0.85 -2.1 160,413 - HMPREF1078_RS13565 0.85 -1.7 160,493 - -0.7 160,510 + -0.4 160,511 - -1.8 160,511 - -3.5 160,511 - -4.1 160,511 - -3.5 160,527 + -2.1 160,527 + -1.3 160,528 - -2.5 160,528 - -4.2 160,528 - -3.8 160,530 - -2.7 160,531 + -4.7 160,531 + -0.7 160,539 - +0.4 160,544 + -1.3 160,545 - -0.8 160,576 + -1.3 160,645 - HMPREF1078_RS13570 0.14 -0.8 160,645 - HMPREF1078_RS13570 0.14 -2.5 160,651 + HMPREF1078_RS13570 0.15 -1.0 160,652 - HMPREF1078_RS13570 0.15 -1.4 160,653 + HMPREF1078_RS13570 0.15 -2.8 160,653 + HMPREF1078_RS13570 0.15 -1.7 160,663 - HMPREF1078_RS13570 0.16 -3.5 160,663 - HMPREF1078_RS13570 0.16 -1.9 160,693 + HMPREF1078_RS13570 0.20 -0.5 160,694 - HMPREF1078_RS13570 0.21 -0.9 160,694 - HMPREF1078_RS13570 0.21 -3.8 160,705 + HMPREF1078_RS13570 0.22 -2.5 160,713 + HMPREF1078_RS13570 0.23 -3.5 160,716 - HMPREF1078_RS13570 0.24 -3.0 160,717 + HMPREF1078_RS13570 0.24 -4.0 160,717 + HMPREF1078_RS13570 0.24 -3.5 160,717 + HMPREF1078_RS13570 0.24 -2.7 160,718 - HMPREF1078_RS13570 0.24 -3.4 160,718 - HMPREF1078_RS13570 0.24 -2.6 160,743 + HMPREF1078_RS13570 0.27 -1.5 160,744 - HMPREF1078_RS13570 0.28 -3.5 160,783 - HMPREF1078_RS13570 0.33 -3.1 160,797 - HMPREF1078_RS13570 0.35 -2.2 160,827 - HMPREF1078_RS13570 0.39 -1.7 160,928 - HMPREF1078_RS13570 0.53 -4.1 161,047 - HMPREF1078_RS13570 0.70 -2.6 161,047 - HMPREF1078_RS13570 0.70 -2.8 161,070 + HMPREF1078_RS13570 0.73 -2.4 161,070 + HMPREF1078_RS13570 0.73 -1.8 161,075 + HMPREF1078_RS13570 0.73 -2.8 161,075 + HMPREF1078_RS13570 0.73 -1.5 161,076 - HMPREF1078_RS13570 0.74 -1.7 161,076 - HMPREF1078_RS13570 0.74 -0.5 161,076 - HMPREF1078_RS13570 0.74 -1.0 161,076 - HMPREF1078_RS13570 0.74 -1.8 161,076 - HMPREF1078_RS13570 0.74 -0.2 161,198 + -3.4 161,198 + -2.1 161,199 - -2.4 161,199 - -2.3 161,219 - -1.7 161,238 + -3.0 161,239 - -0.0 161,239 - +0.9 161,242 + -1.4 161,242 + -4.0 161,242 + -3.1 161,242 + -2.9 161,243 - -1.2 161,243 - -1.2 161,265 + -3.4 161,266 - -3.1 161,268 + -3.5 161,269 - +2.8 161,269 - -3.3 161,274 - +1.2 161,293 + -0.0 161,294 - -2.0 161,296 + -1.5 161,297 - -3.1 161,297 - +0.3 161,298 + -3.3 161,299 - -0.8 161,299 - -4.7 161,385 + HMPREF1078_RS13575 0.19 -1.6 161,386 - HMPREF1078_RS13575 0.19 -2.9 161,386 - HMPREF1078_RS13575 0.19 -3.2 161,387 + HMPREF1078_RS13575 0.19 -2.2 161,388 - HMPREF1078_RS13575 0.20 -1.6 161,422 + HMPREF1078_RS13575 0.25 -3.6 161,426 + HMPREF1078_RS13575 0.26 +0.7 161,426 + HMPREF1078_RS13575 0.26 -1.6 161,426 + HMPREF1078_RS13575 0.26 -0.2 161,427 - HMPREF1078_RS13575 0.26 -0.9 161,427 - HMPREF1078_RS13575 0.26 -3.8 161,427 - HMPREF1078_RS13575 0.26 -4.8 161,429 + HMPREF1078_RS13575 0.27 -1.1 161,430 - HMPREF1078_RS13575 0.27 -0.7 161,430 - HMPREF1078_RS13575 0.27 -1.8 161,430 - HMPREF1078_RS13575 0.27 -2.9 161,433 + HMPREF1078_RS13575 0.27 +1.1 161,433 + HMPREF1078_RS13575 0.27 -1.9 161,433 + HMPREF1078_RS13575 0.27 -3.4 161,433 + HMPREF1078_RS13575 0.27 -1.1 161,438 - HMPREF1078_RS13575 0.28 -2.8 161,497 - HMPREF1078_RS13575 0.38 -2.8 161,526 + HMPREF1078_RS13575 0.43 -2.9 161,667 + HMPREF1078_RS13575 0.67 -2.2 161,667 + HMPREF1078_RS13575 0.67 -1.1 161,674 - HMPREF1078_RS13575 0.68 -3.6 161,674 - HMPREF1078_RS13575 0.68 -1.0 161,678 - HMPREF1078_RS13575 0.69 -3.7 161,678 - HMPREF1078_RS13575 0.69 -4.1 161,678 - HMPREF1078_RS13575 0.69 -2.9 161,678 - HMPREF1078_RS13575 0.69 -0.2 161,682 + HMPREF1078_RS13575 0.69 +0.1 161,709 + HMPREF1078_RS13575 0.74 -2.0 161,737 + HMPREF1078_RS13575 0.79 -1.5 161,752 - HMPREF1078_RS13575 0.81 -3.7 161,755 + HMPREF1078_RS13575 0.82 -0.8 161,755 + HMPREF1078_RS13575 0.82 -1.5 161,755 + HMPREF1078_RS13575 0.82 -2.2 161,756 - HMPREF1078_RS13575 0.82 -0.5 161,756 - HMPREF1078_RS13575 0.82 -4.5 161,782 - HMPREF1078_RS13575 0.86 -1.8 161,823 - -1.1 161,823 - -2.0 161,823 - -3.1 161,848 - -3.0 161,918 - -0.7 161,920 - -0.4 162,049 + -0.0 162,049 + -1.0 162,050 - +0.9 162,051 - +3.0 162,080 - -2.5 162,186 + -1.3 162,191 + -0.7 162,191 + -0.7 162,191 + -0.9 162,191 + +1.2 162,191 + -0.8 162,194 + +0.2 162,194 + +0.8 162,194 + -0.2 162,215 + +0.0 162,252 - +1.5 162,477 + -1.2 162,500 - -0.0 162,514 + -1.0 162,549 + +1.6 162,551 + -1.5 162,568 + +2.8 162,612 + +1.0 162,612 + -1.3 162,619 + +1.5 162,624 - -1.9 162,719 + +0.5 162,719 + +0.3 162,719 + -1.0 162,767 + +1.5 162,791 + +0.5 162,800 - +1.0 162,801 + +0.9 162,801 + +0.7 162,825 + -1.2 162,825 + -1.0 162,825 + -1.0 162,826 - -0.9 162,826 - -0.5 162,827 + -0.0 162,827 + -1.4 162,827 - +1.9 162,840 + +0.1 162,840 + -0.6 162,840 + -0.3 162,840 + -1.3 162,841 - +0.6 162,841 - -1.8 162,844 + -0.2 162,844 + -0.4 162,844 + -1.4 162,845 - -0.7 162,845 - +2.4 162,859 + +0.3 162,859 + -0.9 162,860 - +1.4
Or see this region's nucleotide sequence