Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13550 and HMPREF1078_RS13555 are separated by 64 nucleotides HMPREF1078_RS13555 and HMPREF1078_RS13560 are separated by 5 nucleotides HMPREF1078_RS13560 and HMPREF1078_RS13565 are separated by 155 nucleotides HMPREF1078_RS13565 and HMPREF1078_RS13570 are separated by 18 nucleotides
HMPREF1078_RS13550: HMPREF1078_RS13550 - aspartate kinase, at 156,953 to 158,272
_RS13550
HMPREF1078_RS13555: HMPREF1078_RS13555 - ATP-binding cassette domain-containing protein, at 158,337 to 159,014
_RS13555
HMPREF1078_RS13560: HMPREF1078_RS13560 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE, at 159,020 to 159,616
_RS13560
HMPREF1078_RS13565: HMPREF1078_RS13565 - imidazole glycerol phosphate synthase subunit HisF, at 159,772 to 160,527
_RS13565
HMPREF1078_RS13570: HMPREF1078_RS13570 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 160,546 to 161,265
_RS13570
Position (kb) 159
160 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 158.027 kb on - strand, within HMPREF1078_RS13550 at 158.027 kb on - strand, within HMPREF1078_RS13550 at 158.027 kb on - strand, within HMPREF1078_RS13550 at 158.027 kb on - strand, within HMPREF1078_RS13550 at 158.028 kb on + strand, within HMPREF1078_RS13550 at 158.029 kb on - strand, within HMPREF1078_RS13550 at 158.029 kb on - strand, within HMPREF1078_RS13550 at 158.029 kb on - strand, within HMPREF1078_RS13550 at 158.044 kb on - strand, within HMPREF1078_RS13550 at 158.065 kb on - strand, within HMPREF1078_RS13550 at 158.067 kb on + strand, within HMPREF1078_RS13550 at 158.068 kb on - strand, within HMPREF1078_RS13550 at 158.084 kb on - strand, within HMPREF1078_RS13550 at 158.084 kb on - strand, within HMPREF1078_RS13550 at 158.180 kb on + strand at 158.181 kb on - strand at 158.181 kb on - strand at 158.188 kb on + strand at 158.189 kb on - strand at 158.189 kb on - strand at 158.189 kb on - strand at 158.189 kb on - strand at 158.281 kb on - strand at 158.284 kb on - strand at 158.284 kb on - strand at 158.355 kb on + strand at 158.377 kb on - strand at 158.392 kb on + strand at 158.392 kb on + strand at 158.396 kb on + strand at 158.396 kb on + strand at 158.397 kb on - strand at 158.397 kb on - strand at 158.397 kb on - strand at 158.411 kb on - strand, within HMPREF1078_RS13555 at 158.460 kb on + strand, within HMPREF1078_RS13555 at 158.469 kb on + strand, within HMPREF1078_RS13555 at 158.603 kb on + strand, within HMPREF1078_RS13555 at 158.613 kb on - strand, within HMPREF1078_RS13555 at 158.810 kb on + strand, within HMPREF1078_RS13555 at 158.812 kb on + strand, within HMPREF1078_RS13555 at 158.813 kb on - strand, within HMPREF1078_RS13555 at 158.813 kb on - strand, within HMPREF1078_RS13555 at 158.813 kb on - strand, within HMPREF1078_RS13555 at 158.934 kb on - strand, within HMPREF1078_RS13555 at 158.975 kb on + strand at 158.976 kb on - strand at 158.976 kb on - strand at 158.979 kb on + strand at 158.979 kb on + strand at 159.019 kb on - strand at 159.019 kb on - strand at 159.029 kb on - strand at 159.089 kb on + strand, within HMPREF1078_RS13560 at 159.089 kb on + strand, within HMPREF1078_RS13560 at 159.185 kb on + strand, within HMPREF1078_RS13560 at 159.200 kb on - strand, within HMPREF1078_RS13560 at 159.234 kb on + strand, within HMPREF1078_RS13560 at 159.286 kb on - strand, within HMPREF1078_RS13560 at 159.286 kb on - strand, within HMPREF1078_RS13560 at 159.331 kb on + strand, within HMPREF1078_RS13560 at 159.331 kb on + strand, within HMPREF1078_RS13560 at 159.331 kb on + strand, within HMPREF1078_RS13560 at 159.331 kb on + strand, within HMPREF1078_RS13560 at 159.332 kb on - strand, within HMPREF1078_RS13560 at 159.529 kb on + strand, within HMPREF1078_RS13560 at 159.632 kb on + strand at 159.632 kb on + strand at 159.632 kb on + strand at 159.633 kb on - strand at 159.633 kb on - strand at 159.633 kb on - strand at 159.634 kb on + strand at 159.635 kb on - strand at 159.635 kb on - strand at 159.644 kb on - strand at 159.655 kb on - strand at 159.692 kb on + strand at 159.693 kb on - strand at 159.706 kb on + strand at 159.707 kb on - strand at 159.807 kb on - strand at 159.888 kb on - strand, within HMPREF1078_RS13565 at 159.963 kb on + strand, within HMPREF1078_RS13565 at 159.963 kb on + strand, within HMPREF1078_RS13565 at 160.156 kb on + strand, within HMPREF1078_RS13565 at 160.156 kb on + strand, within HMPREF1078_RS13565 at 160.157 kb on - strand, within HMPREF1078_RS13565 at 160.350 kb on + strand, within HMPREF1078_RS13565 at 160.373 kb on - strand, within HMPREF1078_RS13565 at 160.373 kb on - strand, within HMPREF1078_RS13565 at 160.375 kb on - strand, within HMPREF1078_RS13565 at 160.383 kb on - strand, within HMPREF1078_RS13565 at 160.383 kb on - strand, within HMPREF1078_RS13565 at 160.384 kb on + strand, within HMPREF1078_RS13565 at 160.385 kb on - strand, within HMPREF1078_RS13565 at 160.412 kb on + strand, within HMPREF1078_RS13565 at 160.413 kb on - strand, within HMPREF1078_RS13565 at 160.493 kb on - strand at 160.510 kb on + strand at 160.511 kb on - strand at 160.511 kb on - strand at 160.511 kb on - strand at 160.511 kb on - strand at 160.527 kb on + strand at 160.527 kb on + strand at 160.528 kb on - strand at 160.528 kb on - strand at 160.528 kb on - strand at 160.530 kb on - strand at 160.531 kb on + strand at 160.531 kb on + strand at 160.539 kb on - strand at 160.544 kb on + strand at 160.545 kb on - strand at 160.576 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 158,027 - HMPREF1078_RS13550 0.81 -2.3 158,027 - HMPREF1078_RS13550 0.81 -0.3 158,027 - HMPREF1078_RS13550 0.81 +0.1 158,027 - HMPREF1078_RS13550 0.81 +1.0 158,028 + HMPREF1078_RS13550 0.81 -2.0 158,029 - HMPREF1078_RS13550 0.82 +1.2 158,029 - HMPREF1078_RS13550 0.82 -1.5 158,029 - HMPREF1078_RS13550 0.82 -2.0 158,044 - HMPREF1078_RS13550 0.83 -0.4 158,065 - HMPREF1078_RS13550 0.84 -0.3 158,067 + HMPREF1078_RS13550 0.84 +1.5 158,068 - HMPREF1078_RS13550 0.84 -0.6 158,084 - HMPREF1078_RS13550 0.86 -0.5 158,084 - HMPREF1078_RS13550 0.86 +0.0 158,180 + +0.8 158,181 - +0.9 158,181 - -1.0 158,188 + -2.1 158,189 - -0.2 158,189 - -1.5 158,189 - -0.8 158,189 - -1.0 158,281 - -0.4 158,284 - -1.2 158,284 - -0.5 158,355 + -0.3 158,377 - -0.8 158,392 + +0.1 158,392 + -2.2 158,396 + -1.4 158,396 + -0.6 158,397 - -1.3 158,397 - -1.6 158,397 - -2.5 158,411 - HMPREF1078_RS13555 0.11 -0.9 158,460 + HMPREF1078_RS13555 0.18 -0.5 158,469 + HMPREF1078_RS13555 0.19 -3.5 158,603 + HMPREF1078_RS13555 0.39 +0.2 158,613 - HMPREF1078_RS13555 0.41 -0.7 158,810 + HMPREF1078_RS13555 0.70 -0.7 158,812 + HMPREF1078_RS13555 0.70 -2.4 158,813 - HMPREF1078_RS13555 0.70 -1.3 158,813 - HMPREF1078_RS13555 0.70 -2.7 158,813 - HMPREF1078_RS13555 0.70 -2.0 158,934 - HMPREF1078_RS13555 0.88 -2.2 158,975 + -0.9 158,976 - -1.2 158,976 - -2.7 158,979 + -1.1 158,979 + +0.4 159,019 - -1.6 159,019 - +0.2 159,029 - -1.9 159,089 + HMPREF1078_RS13560 0.12 -4.0 159,089 + HMPREF1078_RS13560 0.12 +0.5 159,185 + HMPREF1078_RS13560 0.28 -0.6 159,200 - HMPREF1078_RS13560 0.30 -2.5 159,234 + HMPREF1078_RS13560 0.36 -1.5 159,286 - HMPREF1078_RS13560 0.45 -0.5 159,286 - HMPREF1078_RS13560 0.45 -0.2 159,331 + HMPREF1078_RS13560 0.52 -3.5 159,331 + HMPREF1078_RS13560 0.52 -2.4 159,331 + HMPREF1078_RS13560 0.52 -1.8 159,331 + HMPREF1078_RS13560 0.52 -1.1 159,332 - HMPREF1078_RS13560 0.52 -1.6 159,529 + HMPREF1078_RS13560 0.85 -1.2 159,632 + -1.7 159,632 + -2.9 159,632 + -2.7 159,633 - +0.8 159,633 - +0.8 159,633 - +3.7 159,634 + -2.7 159,635 - +0.5 159,635 - -0.5 159,644 - -1.3 159,655 - -0.5 159,692 + -1.8 159,693 - +0.8 159,706 + -1.9 159,707 - +1.0 159,807 - -1.6 159,888 - HMPREF1078_RS13565 0.15 -3.0 159,963 + HMPREF1078_RS13565 0.25 -2.0 159,963 + HMPREF1078_RS13565 0.25 -2.6 160,156 + HMPREF1078_RS13565 0.51 -2.6 160,156 + HMPREF1078_RS13565 0.51 -2.5 160,157 - HMPREF1078_RS13565 0.51 -2.1 160,350 + HMPREF1078_RS13565 0.76 -0.3 160,373 - HMPREF1078_RS13565 0.79 -1.1 160,373 - HMPREF1078_RS13565 0.79 -1.1 160,375 - HMPREF1078_RS13565 0.80 -1.8 160,383 - HMPREF1078_RS13565 0.81 -3.4 160,383 - HMPREF1078_RS13565 0.81 -4.1 160,384 + HMPREF1078_RS13565 0.81 -2.5 160,385 - HMPREF1078_RS13565 0.81 -0.3 160,412 + HMPREF1078_RS13565 0.85 -2.1 160,413 - HMPREF1078_RS13565 0.85 -1.7 160,493 - -0.7 160,510 + -0.4 160,511 - -1.8 160,511 - -3.5 160,511 - -4.1 160,511 - -3.5 160,527 + -2.1 160,527 + -1.3 160,528 - -2.5 160,528 - -4.2 160,528 - -3.8 160,530 - -2.7 160,531 + -4.7 160,531 + -0.7 160,539 - +0.4 160,544 + -1.3 160,545 - -0.8 160,576 + -1.3
Or see this region's nucleotide sequence