Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13430 and HMPREF1078_RS13435 are separated by 35 nucleotides HMPREF1078_RS13435 and HMPREF1078_RS13440 are separated by 216 nucleotides
HMPREF1078_RS13430: HMPREF1078_RS13430 - Gfo/Idh/MocA family oxidoreductase, at 124,685 to 126,070
_RS13430
HMPREF1078_RS13435: HMPREF1078_RS13435 - SUMF1/EgtB/PvdO family nonheme iron enzyme, at 126,106 to 127,686
_RS13435
HMPREF1078_RS13440: HMPREF1078_RS13440 - glycoside hydrolase family 2 TIM barrel-domain containing protein, at 127,903 to 131,001
_RS13440
Position (kb) 126
127
128 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 125.108 kb on - strand, within HMPREF1078_RS13430 at 125.108 kb on - strand, within HMPREF1078_RS13430 at 125.108 kb on - strand, within HMPREF1078_RS13430 at 125.108 kb on - strand, within HMPREF1078_RS13430 at 125.108 kb on - strand, within HMPREF1078_RS13430 at 125.139 kb on - strand, within HMPREF1078_RS13430 at 125.241 kb on - strand, within HMPREF1078_RS13430 at 125.241 kb on - strand, within HMPREF1078_RS13430 at 125.273 kb on - strand, within HMPREF1078_RS13430 at 125.320 kb on - strand, within HMPREF1078_RS13430 at 125.320 kb on - strand, within HMPREF1078_RS13430 at 125.431 kb on - strand, within HMPREF1078_RS13430 at 125.443 kb on - strand, within HMPREF1078_RS13430 at 125.443 kb on - strand, within HMPREF1078_RS13430 at 125.468 kb on - strand, within HMPREF1078_RS13430 at 125.484 kb on - strand, within HMPREF1078_RS13430 at 125.525 kb on - strand, within HMPREF1078_RS13430 at 125.593 kb on - strand, within HMPREF1078_RS13430 at 125.671 kb on - strand, within HMPREF1078_RS13430 at 125.711 kb on - strand, within HMPREF1078_RS13430 at 125.711 kb on - strand, within HMPREF1078_RS13430 at 125.711 kb on - strand, within HMPREF1078_RS13430 at 125.765 kb on - strand, within HMPREF1078_RS13430 at 125.903 kb on - strand, within HMPREF1078_RS13430 at 125.905 kb on - strand, within HMPREF1078_RS13430 at 125.905 kb on - strand, within HMPREF1078_RS13430 at 125.908 kb on - strand, within HMPREF1078_RS13430 at 125.976 kb on - strand at 125.976 kb on - strand at 126.020 kb on - strand at 126.050 kb on - strand at 126.076 kb on - strand at 126.076 kb on - strand at 126.076 kb on - strand at 126.086 kb on - strand at 126.108 kb on - strand at 126.184 kb on - strand at 126.290 kb on - strand, within HMPREF1078_RS13435 at 126.351 kb on - strand, within HMPREF1078_RS13435 at 126.389 kb on - strand, within HMPREF1078_RS13435 at 126.403 kb on - strand, within HMPREF1078_RS13435 at 126.403 kb on - strand, within HMPREF1078_RS13435 at 126.403 kb on - strand, within HMPREF1078_RS13435 at 126.474 kb on - strand, within HMPREF1078_RS13435 at 126.474 kb on - strand, within HMPREF1078_RS13435 at 126.520 kb on - strand, within HMPREF1078_RS13435 at 126.600 kb on - strand, within HMPREF1078_RS13435 at 126.681 kb on - strand, within HMPREF1078_RS13435 at 126.681 kb on - strand, within HMPREF1078_RS13435 at 126.681 kb on - strand, within HMPREF1078_RS13435 at 126.681 kb on - strand, within HMPREF1078_RS13435 at 126.795 kb on - strand, within HMPREF1078_RS13435 at 126.795 kb on - strand, within HMPREF1078_RS13435 at 126.797 kb on - strand, within HMPREF1078_RS13435 at 126.797 kb on - strand, within HMPREF1078_RS13435 at 126.797 kb on - strand, within HMPREF1078_RS13435 at 126.797 kb on - strand, within HMPREF1078_RS13435 at 126.814 kb on - strand, within HMPREF1078_RS13435 at 126.883 kb on - strand, within HMPREF1078_RS13435 at 127.027 kb on - strand, within HMPREF1078_RS13435 at 127.036 kb on - strand, within HMPREF1078_RS13435 at 127.108 kb on - strand, within HMPREF1078_RS13435 at 127.108 kb on - strand, within HMPREF1078_RS13435 at 127.108 kb on - strand, within HMPREF1078_RS13435 at 127.129 kb on - strand, within HMPREF1078_RS13435 at 127.141 kb on - strand, within HMPREF1078_RS13435 at 127.143 kb on - strand, within HMPREF1078_RS13435 at 127.143 kb on - strand, within HMPREF1078_RS13435 at 127.178 kb on - strand, within HMPREF1078_RS13435 at 127.178 kb on - strand, within HMPREF1078_RS13435 at 127.209 kb on - strand, within HMPREF1078_RS13435 at 127.222 kb on - strand, within HMPREF1078_RS13435 at 127.293 kb on - strand, within HMPREF1078_RS13435 at 127.293 kb on - strand, within HMPREF1078_RS13435 at 127.367 kb on - strand, within HMPREF1078_RS13435 at 127.367 kb on - strand, within HMPREF1078_RS13435 at 127.399 kb on - strand, within HMPREF1078_RS13435 at 127.399 kb on - strand, within HMPREF1078_RS13435 at 127.399 kb on - strand, within HMPREF1078_RS13435 at 127.401 kb on - strand, within HMPREF1078_RS13435 at 127.401 kb on - strand, within HMPREF1078_RS13435 at 127.567 kb on - strand at 127.567 kb on - strand at 127.567 kb on - strand at 127.569 kb on - strand at 127.569 kb on - strand at 127.666 kb on - strand at 127.681 kb on - strand at 127.700 kb on - strand at 127.746 kb on - strand at 127.800 kb on + strand at 127.806 kb on + strand at 127.894 kb on + strand at 127.947 kb on - strand at 127.967 kb on + strand at 128.020 kb on + strand at 128.031 kb on + strand at 128.031 kb on + strand at 128.031 kb on + strand at 128.031 kb on + strand at 128.037 kb on + strand at 128.037 kb on + strand at 128.037 kb on + strand at 128.037 kb on + strand at 128.037 kb on + strand at 128.037 kb on + strand at 128.037 kb on + strand at 128.037 kb on + strand at 128.037 kb on + strand at 128.037 kb on + strand at 128.037 kb on + strand at 128.038 kb on - strand at 128.046 kb on - strand at 128.060 kb on - strand at 128.060 kb on - strand at 128.118 kb on - strand at 128.237 kb on + strand, within HMPREF1078_RS13440 at 128.237 kb on + strand, within HMPREF1078_RS13440 at 128.238 kb on - strand, within HMPREF1078_RS13440 at 128.238 kb on - strand, within HMPREF1078_RS13440 at 128.243 kb on + strand, within HMPREF1078_RS13440 at 128.243 kb on + strand, within HMPREF1078_RS13440 at 128.243 kb on + strand, within HMPREF1078_RS13440 at 128.244 kb on - strand, within HMPREF1078_RS13440 at 128.244 kb on - strand, within HMPREF1078_RS13440 at 128.244 kb on - strand, within HMPREF1078_RS13440 at 128.258 kb on - strand, within HMPREF1078_RS13440 at 128.275 kb on - strand, within HMPREF1078_RS13440 at 128.296 kb on - strand, within HMPREF1078_RS13440 at 128.330 kb on + strand, within HMPREF1078_RS13440 at 128.333 kb on + strand, within HMPREF1078_RS13440 at 128.333 kb on + strand, within HMPREF1078_RS13440 at 128.356 kb on - strand, within HMPREF1078_RS13440 at 128.389 kb on - strand, within HMPREF1078_RS13440 at 128.417 kb on - strand, within HMPREF1078_RS13440 at 128.460 kb on + strand, within HMPREF1078_RS13440 at 128.463 kb on - strand, within HMPREF1078_RS13440 at 128.517 kb on + strand, within HMPREF1078_RS13440 at 128.684 kb on - strand, within HMPREF1078_RS13440
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 125,108 - HMPREF1078_RS13430 0.31 -0.2 125,108 - HMPREF1078_RS13430 0.31 -2.5 125,108 - HMPREF1078_RS13430 0.31 -1.4 125,108 - HMPREF1078_RS13430 0.31 -2.6 125,108 - HMPREF1078_RS13430 0.31 -2.5 125,139 - HMPREF1078_RS13430 0.33 +2.2 125,241 - HMPREF1078_RS13430 0.40 -0.5 125,241 - HMPREF1078_RS13430 0.40 -0.8 125,273 - HMPREF1078_RS13430 0.42 -1.3 125,320 - HMPREF1078_RS13430 0.46 -3.8 125,320 - HMPREF1078_RS13430 0.46 -0.5 125,431 - HMPREF1078_RS13430 0.54 -2.6 125,443 - HMPREF1078_RS13430 0.55 -0.5 125,443 - HMPREF1078_RS13430 0.55 -0.8 125,468 - HMPREF1078_RS13430 0.56 -0.8 125,484 - HMPREF1078_RS13430 0.58 -0.3 125,525 - HMPREF1078_RS13430 0.61 -1.5 125,593 - HMPREF1078_RS13430 0.66 -0.4 125,671 - HMPREF1078_RS13430 0.71 -2.8 125,711 - HMPREF1078_RS13430 0.74 -0.7 125,711 - HMPREF1078_RS13430 0.74 -2.2 125,711 - HMPREF1078_RS13430 0.74 -1.5 125,765 - HMPREF1078_RS13430 0.78 +0.1 125,903 - HMPREF1078_RS13430 0.88 -0.1 125,905 - HMPREF1078_RS13430 0.88 -3.1 125,905 - HMPREF1078_RS13430 0.88 -2.8 125,908 - HMPREF1078_RS13430 0.88 -0.5 125,976 - +0.2 125,976 - -1.8 126,020 - -0.3 126,050 - -0.9 126,076 - -0.7 126,076 - -3.0 126,076 - -2.2 126,086 - -0.6 126,108 - -0.1 126,184 - -2.6 126,290 - HMPREF1078_RS13435 0.12 -2.1 126,351 - HMPREF1078_RS13435 0.15 -1.9 126,389 - HMPREF1078_RS13435 0.18 -1.7 126,403 - HMPREF1078_RS13435 0.19 -1.5 126,403 - HMPREF1078_RS13435 0.19 -1.2 126,403 - HMPREF1078_RS13435 0.19 -2.5 126,474 - HMPREF1078_RS13435 0.23 -0.2 126,474 - HMPREF1078_RS13435 0.23 -1.3 126,520 - HMPREF1078_RS13435 0.26 -0.9 126,600 - HMPREF1078_RS13435 0.31 -0.7 126,681 - HMPREF1078_RS13435 0.36 -3.2 126,681 - HMPREF1078_RS13435 0.36 -3.3 126,681 - HMPREF1078_RS13435 0.36 -3.5 126,681 - HMPREF1078_RS13435 0.36 -2.0 126,795 - HMPREF1078_RS13435 0.44 -1.2 126,795 - HMPREF1078_RS13435 0.44 -0.7 126,797 - HMPREF1078_RS13435 0.44 -0.9 126,797 - HMPREF1078_RS13435 0.44 -0.7 126,797 - HMPREF1078_RS13435 0.44 -2.3 126,797 - HMPREF1078_RS13435 0.44 +0.3 126,814 - HMPREF1078_RS13435 0.45 -0.8 126,883 - HMPREF1078_RS13435 0.49 -1.3 127,027 - HMPREF1078_RS13435 0.58 -1.2 127,036 - HMPREF1078_RS13435 0.59 -1.1 127,108 - HMPREF1078_RS13435 0.63 -2.3 127,108 - HMPREF1078_RS13435 0.63 -1.7 127,108 - HMPREF1078_RS13435 0.63 -1.3 127,129 - HMPREF1078_RS13435 0.65 -2.2 127,141 - HMPREF1078_RS13435 0.65 -2.3 127,143 - HMPREF1078_RS13435 0.66 -1.6 127,143 - HMPREF1078_RS13435 0.66 -1.2 127,178 - HMPREF1078_RS13435 0.68 -1.1 127,178 - HMPREF1078_RS13435 0.68 -2.9 127,209 - HMPREF1078_RS13435 0.70 -2.7 127,222 - HMPREF1078_RS13435 0.71 -1.9 127,293 - HMPREF1078_RS13435 0.75 -1.3 127,293 - HMPREF1078_RS13435 0.75 -3.5 127,367 - HMPREF1078_RS13435 0.80 -1.4 127,367 - HMPREF1078_RS13435 0.80 -1.2 127,399 - HMPREF1078_RS13435 0.82 +0.8 127,399 - HMPREF1078_RS13435 0.82 -2.5 127,399 - HMPREF1078_RS13435 0.82 -2.7 127,401 - HMPREF1078_RS13435 0.82 +0.7 127,401 - HMPREF1078_RS13435 0.82 -1.7 127,567 - -2.1 127,567 - -0.0 127,567 - +0.2 127,569 - +0.2 127,569 - -1.8 127,666 - +0.8 127,681 - -0.9 127,700 - +0.8 127,746 - +0.9 127,800 + +0.5 127,806 + +0.2 127,894 + +0.1 127,947 - -1.0 127,967 + -3.0 128,020 + +0.5 128,031 + -1.4 128,031 + -0.6 128,031 + -0.0 128,031 + +0.0 128,037 + +1.2 128,037 + -0.7 128,037 + +0.5 128,037 + +0.2 128,037 + +1.3 128,037 + -0.3 128,037 + -1.1 128,037 + -0.5 128,037 + +1.3 128,037 + +0.0 128,037 + +0.0 128,038 - +0.7 128,046 - -0.7 128,060 - +1.1 128,060 - -3.5 128,118 - +0.5 128,237 + HMPREF1078_RS13440 0.11 -0.8 128,237 + HMPREF1078_RS13440 0.11 -2.1 128,238 - HMPREF1078_RS13440 0.11 -1.5 128,238 - HMPREF1078_RS13440 0.11 +1.1 128,243 + HMPREF1078_RS13440 0.11 -0.1 128,243 + HMPREF1078_RS13440 0.11 +0.3 128,243 + HMPREF1078_RS13440 0.11 -0.7 128,244 - HMPREF1078_RS13440 0.11 -0.1 128,244 - HMPREF1078_RS13440 0.11 +0.9 128,244 - HMPREF1078_RS13440 0.11 -1.0 128,258 - HMPREF1078_RS13440 0.11 -1.1 128,275 - HMPREF1078_RS13440 0.12 +0.5 128,296 - HMPREF1078_RS13440 0.13 -1.1 128,330 + HMPREF1078_RS13440 0.14 +1.6 128,333 + HMPREF1078_RS13440 0.14 -1.3 128,333 + HMPREF1078_RS13440 0.14 -0.1 128,356 - HMPREF1078_RS13440 0.15 -1.7 128,389 - HMPREF1078_RS13440 0.16 -0.8 128,417 - HMPREF1078_RS13440 0.17 +0.6 128,460 + HMPREF1078_RS13440 0.18 +0.2 128,463 - HMPREF1078_RS13440 0.18 -1.0 128,517 + HMPREF1078_RS13440 0.20 -2.6 128,684 - HMPREF1078_RS13440 0.25 +0.3
Or see this region's nucleotide sequence