Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS13375

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dextrin from potato starch 2.5 mg/mL (C)
110,587	-		HMPREF1078_RS13370	0.42	-2.1
110,640	+		HMPREF1078_RS13370	0.46	+1.5
110,640	+		HMPREF1078_RS13370	0.46	+0.6
110,648	+		HMPREF1078_RS13370	0.46	+0.3
110,649	-		HMPREF1078_RS13370	0.47	+0.3
110,649	-		HMPREF1078_RS13370	0.47	-1.0
110,649	-		HMPREF1078_RS13370	0.47	-0.4
110,650	+		HMPREF1078_RS13370	0.47	-1.5
110,650	+		HMPREF1078_RS13370	0.47	+0.6
110,658	+		HMPREF1078_RS13370	0.47	-1.4
110,749	+		HMPREF1078_RS13370	0.54	+0.6
110,836	+		HMPREF1078_RS13370	0.60	-0.4
110,852	+		HMPREF1078_RS13370	0.61	+0.3
110,852	+		HMPREF1078_RS13370	0.61	+1.5
110,853	-		HMPREF1078_RS13370	0.61	+1.2
110,853	-		HMPREF1078_RS13370	0.61	+0.5
110,853	-		HMPREF1078_RS13370	0.61	+0.7
110,927	+		HMPREF1078_RS13370	0.66	-0.0
110,964	-		HMPREF1078_RS13370	0.69	+0.8
111,001	+		HMPREF1078_RS13370	0.71	-1.7
111,177	-		HMPREF1078_RS13370	0.83	+1.0
111,177	-		HMPREF1078_RS13370	0.83	+0.9
111,193	+		HMPREF1078_RS13370	0.85	+0.8
111,241	+		HMPREF1078_RS13370	0.88	-0.9
111,242	-		HMPREF1078_RS13370	0.88	-0.8
111,245	+		HMPREF1078_RS13370	0.88	+1.9
111,246	-		HMPREF1078_RS13370	0.88	+0.4
111,264	+		HMPREF1078_RS13370	0.90	+0.5
111,353	+				-0.9
111,353	+				+1.3
111,407	+				+0.8
111,408	-				-0.2
111,504	+				+0.7
111,533	+				-0.1
111,542	+				+0.9
111,543	-				+0.5
111,543	-				-0.7
111,566	-				-0.2
111,649	+				-1.5
111,650	-				-0.7
111,650	-				-0.5
111,679	+				-2.8
111,702	-				-0.9
111,829	+		HMPREF1078_RS13375	0.19	-0.3
111,837	+		HMPREF1078_RS13375	0.19	-1.5
111,839	+		HMPREF1078_RS13375	0.19	-1.9
111,840	-		HMPREF1078_RS13375	0.20	-2.1
111,840	-		HMPREF1078_RS13375	0.20	-1.9
111,872	+		HMPREF1078_RS13375	0.22	-2.0
112,015	+		HMPREF1078_RS13375	0.33	-1.3
112,016	-		HMPREF1078_RS13375	0.33	-1.0
112,016	-		HMPREF1078_RS13375	0.33	-1.3
112,027	+		HMPREF1078_RS13375	0.34	+2.3
112,027	+		HMPREF1078_RS13375	0.34	-1.4
112,028	-		HMPREF1078_RS13375	0.34	-2.3
112,094	+		HMPREF1078_RS13375	0.39	-1.0
112,121	-		HMPREF1078_RS13375	0.41	-2.0
112,121	-		HMPREF1078_RS13375	0.41	-1.5
112,126	+		HMPREF1078_RS13375	0.41	-2.1
112,187	+		HMPREF1078_RS13375	0.46	-2.0
112,187	+		HMPREF1078_RS13375	0.46	-2.4
112,188	-		HMPREF1078_RS13375	0.46	+0.1
112,188	-		HMPREF1078_RS13375	0.46	+0.2
112,189	+		HMPREF1078_RS13375	0.46	-2.5
112,190	-		HMPREF1078_RS13375	0.46	-0.9
112,202	+		HMPREF1078_RS13375	0.47	+0.3
112,254	-		HMPREF1078_RS13375	0.51	-1.7
112,254	-		HMPREF1078_RS13375	0.51	-0.5
112,254	-		HMPREF1078_RS13375	0.51	-0.3
112,277	-		HMPREF1078_RS13375	0.52	-2.2
112,377	-		HMPREF1078_RS13375	0.60	-2.4
112,387	+		HMPREF1078_RS13375	0.61	+0.3
112,388	-		HMPREF1078_RS13375	0.61	-1.3
112,388	-		HMPREF1078_RS13375	0.61	-2.5
112,388	-		HMPREF1078_RS13375	0.61	-0.2
112,391	+		HMPREF1078_RS13375	0.61	-1.4
112,391	+		HMPREF1078_RS13375	0.61	-2.8
112,391	+		HMPREF1078_RS13375	0.61	-2.0
112,392	-		HMPREF1078_RS13375	0.61	-1.0
112,393	+		HMPREF1078_RS13375	0.61	-1.7
112,393	+		HMPREF1078_RS13375	0.61	-0.7
112,419	+		HMPREF1078_RS13375	0.63	-2.7
112,419	+		HMPREF1078_RS13375	0.63	-1.4
112,419	+		HMPREF1078_RS13375	0.63	-2.0
112,419	+		HMPREF1078_RS13375	0.63	-1.8
112,420	-		HMPREF1078_RS13375	0.63	-2.3
112,420	-		HMPREF1078_RS13375	0.63	-0.2
112,420	-		HMPREF1078_RS13375	0.63	-1.2
112,420	-		HMPREF1078_RS13375	0.63	-2.2
112,420	-		HMPREF1078_RS13375	0.63	-2.4
112,420	-		HMPREF1078_RS13375	0.63	-1.3
112,420	-		HMPREF1078_RS13375	0.63	-2.5
112,421	+		HMPREF1078_RS13375	0.63	-0.2
112,473	+		HMPREF1078_RS13375	0.67	-1.1
112,608	-		HMPREF1078_RS13375	0.77	+0.4
112,673	+		HMPREF1078_RS13375	0.82	-3.0
112,674	-		HMPREF1078_RS13375	0.82	-1.2
112,715	+		HMPREF1078_RS13375	0.85	-1.1
112,749	-		HMPREF1078_RS13375	0.88	-3.8
112,760	+		HMPREF1078_RS13375	0.88	-1.7
112,810	+				-1.6
112,884	+				-0.7
112,926	-				+6.1
112,939	+				+1.2
112,939	+				-2.5
113,115	+		HMPREF1078_RS13380	0.15	-0.9
113,116	-		HMPREF1078_RS13380	0.16	-0.4
113,116	-		HMPREF1078_RS13380	0.16	+0.0
113,119	+		HMPREF1078_RS13380	0.17	-0.6
113,188	-		HMPREF1078_RS13380	0.55	-0.6
113,212	+		HMPREF1078_RS13380	0.68	-0.0
113,234	+		HMPREF1078_RS13380	0.80	+0.4
113,234	+		HMPREF1078_RS13380	0.80	+1.3
113,235	-		HMPREF1078_RS13380	0.81	-1.0
113,235	-		HMPREF1078_RS13380	0.81	-1.1
113,235	-		HMPREF1078_RS13380	0.81	-1.1
113,235	-		HMPREF1078_RS13380	0.81	-1.9
113,269	+				-0.7
113,311	+				+1.2
113,338	-		HMPREF1078_RS13385	0.14	+0.6
113,562	-		HMPREF1078_RS13385	0.72	+1.1
113,562	-		HMPREF1078_RS13385	0.72	+1.9
113,663	+				+0.0
113,663	+				+0.9
113,664	-				-1.1
113,672	+				-0.6
113,673	-				-0.2
113,675	+				-2.7
113,675	+				-0.5
113,676	-				-0.5
113,676	-				+1.1
113,891	-		HMPREF1078_RS13390	0.14	-0.1