Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13120 and HMPREF1078_RS13125 are separated by 8 nucleotides HMPREF1078_RS13125 and HMPREF1078_RS13130 are separated by 84 nucleotides HMPREF1078_RS13130 and HMPREF1078_RS13135 are separated by 30 nucleotides
HMPREF1078_RS13120: HMPREF1078_RS13120 - dihydrofolate reductase, at 50,079 to 52,136
_RS13120
HMPREF1078_RS13125: HMPREF1078_RS13125 - DNA alkylation repair protein, at 52,145 to 52,828
_RS13125
HMPREF1078_RS13130: HMPREF1078_RS13130 - Fur family transcriptional regulator, at 52,913 to 53,347
_RS13130
HMPREF1078_RS13135: HMPREF1078_RS13135 - adenylosuccinate synthase, at 53,378 to 54,649
_RS13135
Position (kb) 52
53
54 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 51.987 kb on + strand at 52.065 kb on - strand at 52.065 kb on - strand at 52.076 kb on + strand at 52.077 kb on - strand at 52.107 kb on + strand at 52.137 kb on + strand at 52.138 kb on - strand at 52.144 kb on + strand at 52.171 kb on - strand at 52.239 kb on - strand, within HMPREF1078_RS13125 at 52.239 kb on - strand, within HMPREF1078_RS13125 at 52.240 kb on + strand, within HMPREF1078_RS13125 at 52.240 kb on + strand, within HMPREF1078_RS13125 at 52.289 kb on - strand, within HMPREF1078_RS13125 at 52.294 kb on + strand, within HMPREF1078_RS13125 at 52.545 kb on - strand, within HMPREF1078_RS13125 at 52.621 kb on + strand, within HMPREF1078_RS13125 at 52.789 kb on - strand at 52.790 kb on + strand at 52.793 kb on - strand at 52.990 kb on + strand, within HMPREF1078_RS13130 at 52.990 kb on + strand, within HMPREF1078_RS13130 at 52.990 kb on + strand, within HMPREF1078_RS13130 at 52.992 kb on + strand, within HMPREF1078_RS13130 at 52.992 kb on + strand, within HMPREF1078_RS13130 at 53.017 kb on + strand, within HMPREF1078_RS13130 at 53.078 kb on + strand, within HMPREF1078_RS13130 at 53.100 kb on + strand, within HMPREF1078_RS13130 at 53.145 kb on + strand, within HMPREF1078_RS13130 at 53.150 kb on + strand, within HMPREF1078_RS13130 at 53.282 kb on + strand, within HMPREF1078_RS13130 at 53.300 kb on + strand, within HMPREF1078_RS13130 at 53.307 kb on + strand at 53.307 kb on + strand at 53.307 kb on + strand at 53.311 kb on + strand at 53.354 kb on + strand at 53.361 kb on + strand at 53.361 kb on + strand at 53.361 kb on + strand at 53.365 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 51,987 + +2.4 52,065 - +1.1 52,065 - +0.6 52,076 + +0.9 52,077 - +0.3 52,107 + -1.4 52,137 + +1.2 52,138 - +1.3 52,144 + +0.9 52,171 - +0.8 52,239 - HMPREF1078_RS13125 0.14 -0.0 52,239 - HMPREF1078_RS13125 0.14 -2.3 52,240 + HMPREF1078_RS13125 0.14 +0.2 52,240 + HMPREF1078_RS13125 0.14 +0.9 52,289 - HMPREF1078_RS13125 0.21 -0.4 52,294 + HMPREF1078_RS13125 0.22 -0.0 52,545 - HMPREF1078_RS13125 0.58 +0.4 52,621 + HMPREF1078_RS13125 0.70 -0.1 52,789 - +0.4 52,790 + +0.1 52,793 - +1.2 52,990 + HMPREF1078_RS13130 0.18 -2.2 52,990 + HMPREF1078_RS13130 0.18 -2.5 52,990 + HMPREF1078_RS13130 0.18 -1.5 52,992 + HMPREF1078_RS13130 0.18 -2.4 52,992 + HMPREF1078_RS13130 0.18 -1.4 53,017 + HMPREF1078_RS13130 0.24 -0.4 53,078 + HMPREF1078_RS13130 0.38 -2.0 53,100 + HMPREF1078_RS13130 0.43 -3.7 53,145 + HMPREF1078_RS13130 0.53 -2.0 53,150 + HMPREF1078_RS13130 0.54 -1.2 53,282 + HMPREF1078_RS13130 0.85 -1.8 53,300 + HMPREF1078_RS13130 0.89 +0.2 53,307 + -2.0 53,307 + -3.1 53,307 + -3.3 53,311 + -1.5 53,354 + +1.6 53,361 + -0.7 53,361 + -0.2 53,361 + -0.4 53,365 + -0.7
Or see this region's nucleotide sequence