Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS12545

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS12540 and HMPREF1078_RS12545 are separated by 154 nucleotidesHMPREF1078_RS12545 and HMPREF1078_RS12550 are separated by 14 nucleotides HMPREF1078_RS12540: HMPREF1078_RS12540 - threonine/serine exporter family protein, at 514,053 to 515,402 _RS12540 HMPREF1078_RS12545: HMPREF1078_RS12545 - carboxyl transferase domain-containing protein, at 515,557 to 516,168 _RS12545 HMPREF1078_RS12550: HMPREF1078_RS12550 - acyltransferase, at 516,183 to 517,271 _RS12550 Position (kb) 515 516 517Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 514.605 kb on + strand, within HMPREF1078_RS12540at 514.605 kb on + strand, within HMPREF1078_RS12540at 514.605 kb on + strand, within HMPREF1078_RS12540at 514.606 kb on - strand, within HMPREF1078_RS12540at 514.606 kb on - strand, within HMPREF1078_RS12540at 514.607 kb on + strand, within HMPREF1078_RS12540at 514.825 kb on + strand, within HMPREF1078_RS12540at 514.825 kb on + strand, within HMPREF1078_RS12540at 514.826 kb on - strand, within HMPREF1078_RS12540at 514.862 kb on + strand, within HMPREF1078_RS12540at 514.869 kb on - strand, within HMPREF1078_RS12540at 514.871 kb on - strand, within HMPREF1078_RS12540at 514.871 kb on - strand, within HMPREF1078_RS12540at 514.938 kb on + strand, within HMPREF1078_RS12540at 515.018 kb on - strand, within HMPREF1078_RS12540at 515.025 kb on - strand, within HMPREF1078_RS12540at 515.026 kb on + strand, within HMPREF1078_RS12540at 515.026 kb on + strand, within HMPREF1078_RS12540at 515.026 kb on + strand, within HMPREF1078_RS12540at 515.027 kb on - strand, within HMPREF1078_RS12540at 515.027 kb on - strand, within HMPREF1078_RS12540at 515.039 kb on + strand, within HMPREF1078_RS12540at 515.068 kb on + strand, within HMPREF1078_RS12540at 515.069 kb on - strand, within HMPREF1078_RS12540at 515.145 kb on - strand, within HMPREF1078_RS12540at 515.145 kb on - strand, within HMPREF1078_RS12540at 515.208 kb on - strand, within HMPREF1078_RS12540at 515.340 kb on + strandat 515.343 kb on + strandat 515.343 kb on + strandat 515.344 kb on - strandat 515.526 kb on + strandat 515.526 kb on + strandat 515.569 kb on - strandat 515.569 kb on - strandat 515.569 kb on - strandat 515.605 kb on - strandat 515.630 kb on - strand, within HMPREF1078_RS12545at 515.639 kb on + strand, within HMPREF1078_RS12545at 515.640 kb on - strand, within HMPREF1078_RS12545at 515.819 kb on + strand, within HMPREF1078_RS12545at 515.887 kb on - strand, within HMPREF1078_RS12545at 516.001 kb on + strand, within HMPREF1078_RS12545at 516.124 kb on - strandat 516.179 kb on + strandat 516.341 kb on + strand, within HMPREF1078_RS12550at 516.341 kb on + strand, within HMPREF1078_RS12550at 516.342 kb on - strand, within HMPREF1078_RS12550at 516.353 kb on - strand, within HMPREF1078_RS12550at 516.353 kb on - strand, within HMPREF1078_RS12550at 516.361 kb on + strand, within HMPREF1078_RS12550at 516.414 kb on - strand, within HMPREF1078_RS12550at 516.480 kb on + strand, within HMPREF1078_RS12550at 516.504 kb on + strand, within HMPREF1078_RS12550at 516.505 kb on - strand, within HMPREF1078_RS12550at 516.530 kb on - strand, within HMPREF1078_RS12550at 516.538 kb on + strand, within HMPREF1078_RS12550at 516.540 kb on + strand, within HMPREF1078_RS12550at 516.541 kb on - strand, within HMPREF1078_RS12550at 516.549 kb on - strand, within HMPREF1078_RS12550at 516.549 kb on - strand, within HMPREF1078_RS12550at 516.549 kb on - strand, within HMPREF1078_RS12550at 516.622 kb on - strand, within HMPREF1078_RS12550at 516.626 kb on - strand, within HMPREF1078_RS12550at 516.626 kb on - strand, within HMPREF1078_RS12550at 516.648 kb on + strand, within HMPREF1078_RS12550at 516.649 kb on - strand, within HMPREF1078_RS12550at 516.649 kb on - strand, within HMPREF1078_RS12550at 516.649 kb on - strand, within HMPREF1078_RS12550at 516.674 kb on + strand, within HMPREF1078_RS12550at 516.674 kb on + strand, within HMPREF1078_RS12550at 516.675 kb on - strand, within HMPREF1078_RS12550at 516.816 kb on - strand, within HMPREF1078_RS12550at 516.821 kb on + strand, within HMPREF1078_RS12550at 516.821 kb on + strand, within HMPREF1078_RS12550at 516.822 kb on - strand, within HMPREF1078_RS12550at 516.847 kb on + strand, within HMPREF1078_RS12550at 516.852 kb on - strand, within HMPREF1078_RS12550at 516.852 kb on - strand, within HMPREF1078_RS12550at 516.852 kb on - strand, within HMPREF1078_RS12550at 516.858 kb on + strand, within HMPREF1078_RS12550at 516.858 kb on + strand, within HMPREF1078_RS12550at 516.859 kb on - strand, within HMPREF1078_RS12550at 516.954 kb on - strand, within HMPREF1078_RS12550at 516.959 kb on - strand, within HMPREF1078_RS12550at 516.988 kb on - strand, within HMPREF1078_RS12550at 516.999 kb on - strand, within HMPREF1078_RS12550at 517.071 kb on + strand, within HMPREF1078_RS12550at 517.073 kb on + strand, within HMPREF1078_RS12550at 517.074 kb on - strand, within HMPREF1078_RS12550at 517.108 kb on + strand, within HMPREF1078_RS12550at 517.111 kb on - strand, within HMPREF1078_RS12550

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C)
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514,605 + HMPREF1078_RS12540 0.41 +0.6
514,605 + HMPREF1078_RS12540 0.41 +0.1
514,605 + HMPREF1078_RS12540 0.41 +0.8
514,606 - HMPREF1078_RS12540 0.41 +0.2
514,606 - HMPREF1078_RS12540 0.41 -0.8
514,607 + HMPREF1078_RS12540 0.41 +0.5
514,825 + HMPREF1078_RS12540 0.57 -3.6
514,825 + HMPREF1078_RS12540 0.57 -2.0
514,826 - HMPREF1078_RS12540 0.57 +0.4
514,862 + HMPREF1078_RS12540 0.60 +0.2
514,869 - HMPREF1078_RS12540 0.60 -0.6
514,871 - HMPREF1078_RS12540 0.61 -1.1
514,871 - HMPREF1078_RS12540 0.61 -1.3
514,938 + HMPREF1078_RS12540 0.66 -2.6
515,018 - HMPREF1078_RS12540 0.71 +0.4
515,025 - HMPREF1078_RS12540 0.72 -0.8
515,026 + HMPREF1078_RS12540 0.72 +1.2
515,026 + HMPREF1078_RS12540 0.72 +1.0
515,026 + HMPREF1078_RS12540 0.72 -0.1
515,027 - HMPREF1078_RS12540 0.72 +1.0
515,027 - HMPREF1078_RS12540 0.72 +0.4
515,039 + HMPREF1078_RS12540 0.73 -0.4
515,068 + HMPREF1078_RS12540 0.75 -0.5
515,069 - HMPREF1078_RS12540 0.75 +0.0
515,145 - HMPREF1078_RS12540 0.81 -0.1
515,145 - HMPREF1078_RS12540 0.81 -0.3
515,208 - HMPREF1078_RS12540 0.86 -1.2
515,340 + -0.2
515,343 + +0.9
515,343 + +1.6
515,344 - +1.2
515,526 + -1.8
515,526 + -1.5
515,569 - +0.3
515,569 - -1.2
515,569 - +0.3
515,605 - -1.2
515,630 - HMPREF1078_RS12545 0.12 -1.8
515,639 + HMPREF1078_RS12545 0.13 -0.6
515,640 - HMPREF1078_RS12545 0.14 -2.4
515,819 + HMPREF1078_RS12545 0.43 -1.0
515,887 - HMPREF1078_RS12545 0.54 -2.4
516,001 + HMPREF1078_RS12545 0.73 +0.2
516,124 - -0.8
516,179 + -0.8
516,341 + HMPREF1078_RS12550 0.15 -0.6
516,341 + HMPREF1078_RS12550 0.15 -0.4
516,342 - HMPREF1078_RS12550 0.15 -0.5
516,353 - HMPREF1078_RS12550 0.16 +0.2
516,353 - HMPREF1078_RS12550 0.16 -0.0
516,361 + HMPREF1078_RS12550 0.16 -1.3
516,414 - HMPREF1078_RS12550 0.21 -1.0
516,480 + HMPREF1078_RS12550 0.27 +0.8
516,504 + HMPREF1078_RS12550 0.29 -0.7
516,505 - HMPREF1078_RS12550 0.30 -0.6
516,530 - HMPREF1078_RS12550 0.32 +0.4
516,538 + HMPREF1078_RS12550 0.33 +5.9
516,540 + HMPREF1078_RS12550 0.33 +0.7
516,541 - HMPREF1078_RS12550 0.33 +0.4
516,549 - HMPREF1078_RS12550 0.34 +0.2
516,549 - HMPREF1078_RS12550 0.34 -1.5
516,549 - HMPREF1078_RS12550 0.34 -0.5
516,622 - HMPREF1078_RS12550 0.40 -1.2
516,626 - HMPREF1078_RS12550 0.41 -0.3
516,626 - HMPREF1078_RS12550 0.41 +0.6
516,648 + HMPREF1078_RS12550 0.43 -0.5
516,649 - HMPREF1078_RS12550 0.43 +1.0
516,649 - HMPREF1078_RS12550 0.43 +0.3
516,649 - HMPREF1078_RS12550 0.43 +0.3
516,674 + HMPREF1078_RS12550 0.45 +0.0
516,674 + HMPREF1078_RS12550 0.45 -0.4
516,675 - HMPREF1078_RS12550 0.45 +0.7
516,816 - HMPREF1078_RS12550 0.58 +0.4
516,821 + HMPREF1078_RS12550 0.59 +0.5
516,821 + HMPREF1078_RS12550 0.59 +1.2
516,822 - HMPREF1078_RS12550 0.59 -0.5
516,847 + HMPREF1078_RS12550 0.61 +0.2
516,852 - HMPREF1078_RS12550 0.61 +2.7
516,852 - HMPREF1078_RS12550 0.61 +0.6
516,852 - HMPREF1078_RS12550 0.61 -0.1
516,858 + HMPREF1078_RS12550 0.62 +0.3
516,858 + HMPREF1078_RS12550 0.62 -0.3
516,859 - HMPREF1078_RS12550 0.62 -0.6
516,954 - HMPREF1078_RS12550 0.71 -0.3
516,959 - HMPREF1078_RS12550 0.71 +0.2
516,988 - HMPREF1078_RS12550 0.74 +0.3
516,999 - HMPREF1078_RS12550 0.75 -0.4
517,071 + HMPREF1078_RS12550 0.82 -1.4
517,073 + HMPREF1078_RS12550 0.82 -1.4
517,074 - HMPREF1078_RS12550 0.82 +1.1
517,108 + HMPREF1078_RS12550 0.85 +0.3
517,111 - HMPREF1078_RS12550 0.85 +0.3

Or see this region's nucleotide sequence