Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS12405 and HMPREF1078_RS12410 are separated by 52 nucleotides HMPREF1078_RS12410 and HMPREF1078_RS12415 are separated by 13 nucleotides
HMPREF1078_RS12405: HMPREF1078_RS12405 - hypothetical protein, at 471,096 to 473,051
_RS12405
HMPREF1078_RS12410: HMPREF1078_RS12410 - signal peptidase I, at 473,104 to 473,967
_RS12410
HMPREF1078_RS12415: HMPREF1078_RS12415 - O-antigen ligase family protein, at 473,981 to 475,804
_RS12415
Position (kb) 473
474 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 472.106 kb on + strand, within HMPREF1078_RS12405 at 472.107 kb on - strand, within HMPREF1078_RS12405 at 472.107 kb on - strand, within HMPREF1078_RS12405 at 472.107 kb on - strand, within HMPREF1078_RS12405 at 472.107 kb on - strand, within HMPREF1078_RS12405 at 472.107 kb on - strand, within HMPREF1078_RS12405 at 472.108 kb on + strand, within HMPREF1078_RS12405 at 472.108 kb on + strand, within HMPREF1078_RS12405 at 472.128 kb on + strand, within HMPREF1078_RS12405 at 472.129 kb on - strand, within HMPREF1078_RS12405 at 472.129 kb on - strand, within HMPREF1078_RS12405 at 472.130 kb on + strand, within HMPREF1078_RS12405 at 472.147 kb on + strand, within HMPREF1078_RS12405 at 472.148 kb on - strand, within HMPREF1078_RS12405 at 472.148 kb on - strand, within HMPREF1078_RS12405 at 472.151 kb on + strand, within HMPREF1078_RS12405 at 472.152 kb on - strand, within HMPREF1078_RS12405 at 472.152 kb on - strand, within HMPREF1078_RS12405 at 472.193 kb on + strand, within HMPREF1078_RS12405 at 472.194 kb on - strand, within HMPREF1078_RS12405 at 472.195 kb on + strand, within HMPREF1078_RS12405 at 472.204 kb on - strand, within HMPREF1078_RS12405 at 472.292 kb on + strand, within HMPREF1078_RS12405 at 472.305 kb on + strand, within HMPREF1078_RS12405 at 472.306 kb on - strand, within HMPREF1078_RS12405 at 472.306 kb on - strand, within HMPREF1078_RS12405 at 472.306 kb on - strand, within HMPREF1078_RS12405 at 472.368 kb on - strand, within HMPREF1078_RS12405 at 472.368 kb on - strand, within HMPREF1078_RS12405 at 472.425 kb on + strand, within HMPREF1078_RS12405 at 472.445 kb on - strand, within HMPREF1078_RS12405 at 472.475 kb on + strand, within HMPREF1078_RS12405 at 472.476 kb on - strand, within HMPREF1078_RS12405 at 472.512 kb on - strand, within HMPREF1078_RS12405 at 472.512 kb on - strand, within HMPREF1078_RS12405 at 472.547 kb on - strand, within HMPREF1078_RS12405 at 472.614 kb on - strand, within HMPREF1078_RS12405 at 472.691 kb on + strand, within HMPREF1078_RS12405 at 472.709 kb on + strand, within HMPREF1078_RS12405 at 472.727 kb on + strand, within HMPREF1078_RS12405 at 472.728 kb on - strand, within HMPREF1078_RS12405 at 472.728 kb on - strand, within HMPREF1078_RS12405 at 472.730 kb on + strand, within HMPREF1078_RS12405 at 472.732 kb on + strand, within HMPREF1078_RS12405 at 472.812 kb on - strand, within HMPREF1078_RS12405 at 472.812 kb on - strand, within HMPREF1078_RS12405 at 472.827 kb on + strand, within HMPREF1078_RS12405 at 472.879 kb on + strand at 472.880 kb on - strand at 472.893 kb on - strand at 472.899 kb on - strand at 472.910 kb on + strand at 472.982 kb on + strand at 473.012 kb on - strand at 473.056 kb on - strand at 473.067 kb on + strand at 473.070 kb on - strand at 473.079 kb on + strand at 473.119 kb on - strand at 473.119 kb on - strand at 473.123 kb on + strand at 473.124 kb on - strand at 473.327 kb on + strand, within HMPREF1078_RS12410 at 473.328 kb on - strand, within HMPREF1078_RS12410
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 472,106 + HMPREF1078_RS12405 0.52 +1.6 472,107 - HMPREF1078_RS12405 0.52 +0.4 472,107 - HMPREF1078_RS12405 0.52 +0.4 472,107 - HMPREF1078_RS12405 0.52 +0.0 472,107 - HMPREF1078_RS12405 0.52 +0.8 472,107 - HMPREF1078_RS12405 0.52 -0.1 472,108 + HMPREF1078_RS12405 0.52 -1.6 472,108 + HMPREF1078_RS12405 0.52 +0.1 472,128 + HMPREF1078_RS12405 0.53 +0.7 472,129 - HMPREF1078_RS12405 0.53 -0.2 472,129 - HMPREF1078_RS12405 0.53 -0.6 472,130 + HMPREF1078_RS12405 0.53 -1.1 472,147 + HMPREF1078_RS12405 0.54 -1.1 472,148 - HMPREF1078_RS12405 0.54 +0.9 472,148 - HMPREF1078_RS12405 0.54 -0.7 472,151 + HMPREF1078_RS12405 0.54 -0.3 472,152 - HMPREF1078_RS12405 0.54 -1.4 472,152 - HMPREF1078_RS12405 0.54 -0.1 472,193 + HMPREF1078_RS12405 0.56 +0.4 472,194 - HMPREF1078_RS12405 0.56 -0.0 472,195 + HMPREF1078_RS12405 0.56 -1.1 472,204 - HMPREF1078_RS12405 0.57 +0.0 472,292 + HMPREF1078_RS12405 0.61 -2.8 472,305 + HMPREF1078_RS12405 0.62 -1.9 472,306 - HMPREF1078_RS12405 0.62 -1.7 472,306 - HMPREF1078_RS12405 0.62 +1.1 472,306 - HMPREF1078_RS12405 0.62 -0.8 472,368 - HMPREF1078_RS12405 0.65 -0.8 472,368 - HMPREF1078_RS12405 0.65 -0.2 472,425 + HMPREF1078_RS12405 0.68 +1.2 472,445 - HMPREF1078_RS12405 0.69 +0.1 472,475 + HMPREF1078_RS12405 0.71 -0.7 472,476 - HMPREF1078_RS12405 0.71 +0.7 472,512 - HMPREF1078_RS12405 0.72 -0.4 472,512 - HMPREF1078_RS12405 0.72 -1.5 472,547 - HMPREF1078_RS12405 0.74 -0.1 472,614 - HMPREF1078_RS12405 0.78 -0.9 472,691 + HMPREF1078_RS12405 0.82 +0.1 472,709 + HMPREF1078_RS12405 0.82 +0.1 472,727 + HMPREF1078_RS12405 0.83 -0.4 472,728 - HMPREF1078_RS12405 0.83 +0.4 472,728 - HMPREF1078_RS12405 0.83 -1.8 472,730 + HMPREF1078_RS12405 0.84 -2.4 472,732 + HMPREF1078_RS12405 0.84 -1.8 472,812 - HMPREF1078_RS12405 0.88 -0.4 472,812 - HMPREF1078_RS12405 0.88 -2.1 472,827 + HMPREF1078_RS12405 0.88 +0.5 472,879 + -1.0 472,880 - +0.0 472,893 - -3.6 472,899 - -0.8 472,910 + -1.9 472,982 + +2.1 473,012 - -2.3 473,056 - +1.0 473,067 + +0.6 473,070 - +0.2 473,079 + +1.5 473,119 - -0.1 473,119 - -0.4 473,123 + -0.6 473,124 - -1.2 473,327 + HMPREF1078_RS12410 0.26 -0.4 473,328 - HMPREF1078_RS12410 0.26 -2.2
Or see this region's nucleotide sequence