Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS12110 and HMPREF1078_RS12115 are separated by 68 nucleotides HMPREF1078_RS12115 and HMPREF1078_RS12120 overlap by 6 nucleotides HMPREF1078_RS12120 and HMPREF1078_RS12125 are separated by 80 nucleotides
HMPREF1078_RS12110: HMPREF1078_RS12110 - DNA polymerase III subunit alpha, at 388,356 to 392,156
_RS12110
HMPREF1078_RS12115: HMPREF1078_RS12115 - thioredoxin, at 392,225 to 392,539
_RS12115
HMPREF1078_RS12120: HMPREF1078_RS12120 - tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD, at 392,534 to 393,214
_RS12120
HMPREF1078_RS12125: HMPREF1078_RS12125 - TonB-dependent receptor, at 393,295 to 395,685
_RS12125
Position (kb) 392
393 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 392.157 kb on + strand at 392.158 kb on - strand at 392.158 kb on - strand at 392.163 kb on + strand at 392.164 kb on - strand at 392.164 kb on - strand at 392.168 kb on + strand at 392.204 kb on - strand at 392.204 kb on - strand at 392.205 kb on + strand at 392.205 kb on + strand at 392.206 kb on - strand at 392.208 kb on - strand at 392.215 kb on - strand at 392.219 kb on - strand at 392.224 kb on + strand at 392.225 kb on - strand at 392.275 kb on + strand, within HMPREF1078_RS12115 at 392.276 kb on - strand, within HMPREF1078_RS12115 at 392.360 kb on + strand, within HMPREF1078_RS12115 at 392.394 kb on + strand, within HMPREF1078_RS12115 at 392.394 kb on + strand, within HMPREF1078_RS12115 at 392.394 kb on + strand, within HMPREF1078_RS12115 at 392.395 kb on - strand, within HMPREF1078_RS12115 at 392.395 kb on - strand, within HMPREF1078_RS12115 at 392.395 kb on - strand, within HMPREF1078_RS12115 at 392.472 kb on + strand, within HMPREF1078_RS12115 at 392.472 kb on + strand, within HMPREF1078_RS12115 at 392.473 kb on - strand, within HMPREF1078_RS12115 at 392.475 kb on + strand, within HMPREF1078_RS12115 at 392.475 kb on + strand, within HMPREF1078_RS12115 at 392.475 kb on + strand, within HMPREF1078_RS12115 at 392.476 kb on - strand, within HMPREF1078_RS12115 at 392.476 kb on - strand, within HMPREF1078_RS12115 at 392.479 kb on + strand, within HMPREF1078_RS12115 at 392.488 kb on - strand, within HMPREF1078_RS12115 at 392.488 kb on - strand, within HMPREF1078_RS12115 at 392.488 kb on - strand, within HMPREF1078_RS12115 at 392.500 kb on + strand, within HMPREF1078_RS12115 at 392.514 kb on + strand at 392.518 kb on + strand at 392.523 kb on + strand at 392.524 kb on - strand at 392.537 kb on + strand at 392.538 kb on - strand at 392.542 kb on + strand at 392.543 kb on - strand at 392.617 kb on + strand, within HMPREF1078_RS12120 at 392.617 kb on + strand, within HMPREF1078_RS12120 at 392.617 kb on + strand, within HMPREF1078_RS12120 at 392.617 kb on + strand, within HMPREF1078_RS12120 at 392.618 kb on - strand, within HMPREF1078_RS12120 at 392.618 kb on - strand, within HMPREF1078_RS12120 at 392.643 kb on + strand, within HMPREF1078_RS12120 at 392.643 kb on + strand, within HMPREF1078_RS12120 at 392.643 kb on + strand, within HMPREF1078_RS12120 at 392.643 kb on + strand, within HMPREF1078_RS12120 at 392.643 kb on + strand, within HMPREF1078_RS12120 at 392.643 kb on + strand, within HMPREF1078_RS12120 at 392.644 kb on - strand, within HMPREF1078_RS12120 at 392.644 kb on - strand, within HMPREF1078_RS12120 at 392.679 kb on + strand, within HMPREF1078_RS12120 at 392.679 kb on + strand, within HMPREF1078_RS12120 at 392.679 kb on + strand, within HMPREF1078_RS12120 at 392.680 kb on - strand, within HMPREF1078_RS12120 at 392.745 kb on + strand, within HMPREF1078_RS12120 at 392.780 kb on - strand, within HMPREF1078_RS12120 at 392.780 kb on - strand, within HMPREF1078_RS12120 at 392.780 kb on - strand, within HMPREF1078_RS12120 at 392.780 kb on - strand, within HMPREF1078_RS12120 at 392.795 kb on + strand, within HMPREF1078_RS12120 at 392.796 kb on - strand, within HMPREF1078_RS12120 at 392.952 kb on + strand, within HMPREF1078_RS12120 at 392.953 kb on - strand, within HMPREF1078_RS12120 at 393.065 kb on + strand, within HMPREF1078_RS12120 at 393.065 kb on + strand, within HMPREF1078_RS12120 at 393.124 kb on - strand, within HMPREF1078_RS12120 at 393.154 kb on + strand at 393.193 kb on + strand at 393.193 kb on + strand at 393.216 kb on + strand at 393.217 kb on - strand at 393.217 kb on - strand at 393.223 kb on - strand at 393.224 kb on + strand at 393.225 kb on - strand at 393.228 kb on - strand at 393.263 kb on - strand at 393.264 kb on + strand at 393.280 kb on + strand at 393.281 kb on - strand at 393.321 kb on - strand at 393.347 kb on + strand at 393.367 kb on + strand at 393.367 kb on + strand at 393.367 kb on + strand at 393.368 kb on - strand at 393.368 kb on - strand at 393.386 kb on + strand at 393.387 kb on - strand at 393.446 kb on + strand at 393.447 kb on - strand at 393.447 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 392,157 + -0.6 392,158 - -1.3 392,158 - -0.0 392,163 + +0.5 392,164 - +0.9 392,164 - +0.4 392,168 + -0.7 392,204 - -0.4 392,204 - -2.9 392,205 + -0.8 392,205 + +0.0 392,206 - -2.4 392,208 - -3.1 392,215 - -2.4 392,219 - -1.4 392,224 + +0.1 392,225 - -3.4 392,275 + HMPREF1078_RS12115 0.16 -2.6 392,276 - HMPREF1078_RS12115 0.16 -0.8 392,360 + HMPREF1078_RS12115 0.43 -1.6 392,394 + HMPREF1078_RS12115 0.54 +0.3 392,394 + HMPREF1078_RS12115 0.54 -1.9 392,394 + HMPREF1078_RS12115 0.54 +0.4 392,395 - HMPREF1078_RS12115 0.54 -2.4 392,395 - HMPREF1078_RS12115 0.54 -0.1 392,395 - HMPREF1078_RS12115 0.54 +1.9 392,472 + HMPREF1078_RS12115 0.78 -1.9 392,472 + HMPREF1078_RS12115 0.78 -3.1 392,473 - HMPREF1078_RS12115 0.79 +0.1 392,475 + HMPREF1078_RS12115 0.79 -1.5 392,475 + HMPREF1078_RS12115 0.79 -1.8 392,475 + HMPREF1078_RS12115 0.79 -1.9 392,476 - HMPREF1078_RS12115 0.80 -0.6 392,476 - HMPREF1078_RS12115 0.80 -0.5 392,479 + HMPREF1078_RS12115 0.81 -0.3 392,488 - HMPREF1078_RS12115 0.83 -0.1 392,488 - HMPREF1078_RS12115 0.83 +0.2 392,488 - HMPREF1078_RS12115 0.83 -1.8 392,500 + HMPREF1078_RS12115 0.87 -2.4 392,514 + -2.8 392,518 + -3.3 392,523 + +0.4 392,524 - -2.4 392,537 + +3.1 392,538 - -0.5 392,542 + -1.0 392,543 - -0.5 392,617 + HMPREF1078_RS12120 0.12 -0.8 392,617 + HMPREF1078_RS12120 0.12 -0.8 392,617 + HMPREF1078_RS12120 0.12 +0.9 392,617 + HMPREF1078_RS12120 0.12 -2.2 392,618 - HMPREF1078_RS12120 0.12 -1.2 392,618 - HMPREF1078_RS12120 0.12 -0.7 392,643 + HMPREF1078_RS12120 0.16 -1.1 392,643 + HMPREF1078_RS12120 0.16 +0.1 392,643 + HMPREF1078_RS12120 0.16 -0.1 392,643 + HMPREF1078_RS12120 0.16 -0.8 392,643 + HMPREF1078_RS12120 0.16 +0.2 392,643 + HMPREF1078_RS12120 0.16 -2.2 392,644 - HMPREF1078_RS12120 0.16 -0.2 392,644 - HMPREF1078_RS12120 0.16 -3.0 392,679 + HMPREF1078_RS12120 0.21 -0.4 392,679 + HMPREF1078_RS12120 0.21 -0.1 392,679 + HMPREF1078_RS12120 0.21 -1.0 392,680 - HMPREF1078_RS12120 0.21 -1.8 392,745 + HMPREF1078_RS12120 0.31 -0.2 392,780 - HMPREF1078_RS12120 0.36 +1.1 392,780 - HMPREF1078_RS12120 0.36 -0.4 392,780 - HMPREF1078_RS12120 0.36 -2.6 392,780 - HMPREF1078_RS12120 0.36 +1.3 392,795 + HMPREF1078_RS12120 0.38 -0.4 392,796 - HMPREF1078_RS12120 0.38 +0.5 392,952 + HMPREF1078_RS12120 0.61 -0.0 392,953 - HMPREF1078_RS12120 0.62 +0.4 393,065 + HMPREF1078_RS12120 0.78 -0.5 393,065 + HMPREF1078_RS12120 0.78 -2.6 393,124 - HMPREF1078_RS12120 0.87 +0.3 393,154 + -1.4 393,193 + +1.3 393,193 + -0.5 393,216 + -1.9 393,217 - +2.3 393,217 - -1.0 393,223 - +0.3 393,224 + -0.2 393,225 - -1.0 393,228 - +0.5 393,263 - -0.6 393,264 + +1.0 393,280 + -0.9 393,281 - -0.4 393,321 - -1.9 393,347 + -2.7 393,367 + -0.6 393,367 + -0.1 393,367 + -1.7 393,368 - -1.7 393,368 - +0.9 393,386 + -0.4 393,387 - -0.8 393,446 + -1.5 393,447 - -0.8 393,447 - -0.8
Or see this region's nucleotide sequence