Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS12075 and HMPREF1078_RS12080 are separated by 25 nucleotides HMPREF1078_RS12080 and HMPREF1078_RS12085 are separated by 110 nucleotides
HMPREF1078_RS12075: HMPREF1078_RS12075 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 381,750 to 382,967
_RS12075
HMPREF1078_RS12080: HMPREF1078_RS12080 - pyridoxal phosphate-dependent aminotransferase, at 382,993 to 384,186
_RS12080
HMPREF1078_RS12085: HMPREF1078_RS12085 - translation elongation factor Ts, at 384,297 to 385,286
_RS12085
Position (kb) 382
383
384
385 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 382.958 kb on + strand at 382.973 kb on - strand at 382.976 kb on + strand at 382.976 kb on + strand at 382.980 kb on + strand at 382.981 kb on - strand at 382.981 kb on - strand at 382.983 kb on + strand at 382.983 kb on + strand at 382.984 kb on - strand at 382.989 kb on + strand at 382.990 kb on - strand at 383.003 kb on + strand at 383.099 kb on + strand at 383.136 kb on + strand, within HMPREF1078_RS12080 at 383.136 kb on + strand, within HMPREF1078_RS12080 at 383.136 kb on + strand, within HMPREF1078_RS12080 at 383.139 kb on + strand, within HMPREF1078_RS12080 at 383.139 kb on + strand, within HMPREF1078_RS12080 at 383.173 kb on + strand, within HMPREF1078_RS12080 at 383.257 kb on + strand, within HMPREF1078_RS12080 at 383.310 kb on + strand, within HMPREF1078_RS12080 at 383.322 kb on - strand, within HMPREF1078_RS12080 at 383.387 kb on + strand, within HMPREF1078_RS12080 at 383.403 kb on + strand, within HMPREF1078_RS12080 at 383.403 kb on + strand, within HMPREF1078_RS12080 at 383.404 kb on - strand, within HMPREF1078_RS12080 at 383.404 kb on - strand, within HMPREF1078_RS12080 at 383.412 kb on - strand, within HMPREF1078_RS12080 at 383.521 kb on - strand, within HMPREF1078_RS12080 at 383.521 kb on - strand, within HMPREF1078_RS12080 at 383.533 kb on + strand, within HMPREF1078_RS12080 at 383.533 kb on + strand, within HMPREF1078_RS12080 at 383.533 kb on + strand, within HMPREF1078_RS12080 at 383.534 kb on - strand, within HMPREF1078_RS12080 at 383.536 kb on - strand, within HMPREF1078_RS12080 at 383.619 kb on + strand, within HMPREF1078_RS12080 at 383.619 kb on + strand, within HMPREF1078_RS12080 at 383.619 kb on + strand, within HMPREF1078_RS12080 at 383.620 kb on - strand, within HMPREF1078_RS12080 at 383.620 kb on - strand, within HMPREF1078_RS12080 at 383.620 kb on - strand, within HMPREF1078_RS12080 at 383.620 kb on - strand, within HMPREF1078_RS12080 at 383.626 kb on + strand, within HMPREF1078_RS12080 at 383.627 kb on - strand, within HMPREF1078_RS12080 at 383.627 kb on - strand, within HMPREF1078_RS12080 at 383.627 kb on - strand, within HMPREF1078_RS12080 at 383.629 kb on - strand, within HMPREF1078_RS12080 at 383.640 kb on + strand, within HMPREF1078_RS12080 at 383.676 kb on + strand, within HMPREF1078_RS12080 at 383.677 kb on - strand, within HMPREF1078_RS12080 at 383.759 kb on + strand, within HMPREF1078_RS12080 at 383.788 kb on + strand, within HMPREF1078_RS12080 at 383.788 kb on + strand, within HMPREF1078_RS12080 at 383.789 kb on - strand, within HMPREF1078_RS12080 at 383.790 kb on + strand, within HMPREF1078_RS12080 at 383.790 kb on + strand, within HMPREF1078_RS12080 at 383.790 kb on + strand, within HMPREF1078_RS12080 at 383.790 kb on + strand, within HMPREF1078_RS12080 at 383.791 kb on - strand, within HMPREF1078_RS12080 at 383.837 kb on - strand, within HMPREF1078_RS12080 at 383.937 kb on - strand, within HMPREF1078_RS12080 at 383.977 kb on - strand, within HMPREF1078_RS12080 at 383.977 kb on - strand, within HMPREF1078_RS12080 at 383.977 kb on - strand, within HMPREF1078_RS12080 at 383.977 kb on - strand, within HMPREF1078_RS12080 at 383.977 kb on - strand, within HMPREF1078_RS12080 at 383.980 kb on + strand, within HMPREF1078_RS12080 at 383.980 kb on + strand, within HMPREF1078_RS12080 at 383.980 kb on + strand, within HMPREF1078_RS12080 at 383.981 kb on - strand, within HMPREF1078_RS12080 at 383.983 kb on + strand, within HMPREF1078_RS12080 at 384.033 kb on - strand, within HMPREF1078_RS12080 at 384.033 kb on - strand, within HMPREF1078_RS12080 at 384.040 kb on + strand, within HMPREF1078_RS12080 at 384.040 kb on + strand, within HMPREF1078_RS12080 at 384.040 kb on + strand, within HMPREF1078_RS12080 at 384.040 kb on + strand, within HMPREF1078_RS12080 at 384.041 kb on - strand, within HMPREF1078_RS12080 at 384.041 kb on - strand, within HMPREF1078_RS12080 at 384.041 kb on - strand, within HMPREF1078_RS12080 at 384.041 kb on - strand, within HMPREF1078_RS12080 at 384.041 kb on - strand, within HMPREF1078_RS12080 at 384.062 kb on + strand, within HMPREF1078_RS12080 at 384.062 kb on + strand, within HMPREF1078_RS12080 at 384.062 kb on + strand, within HMPREF1078_RS12080 at 384.062 kb on + strand, within HMPREF1078_RS12080 at 384.062 kb on + strand, within HMPREF1078_RS12080 at 384.063 kb on - strand, within HMPREF1078_RS12080 at 384.063 kb on - strand, within HMPREF1078_RS12080 at 384.115 kb on + strand at 384.115 kb on + strand at 384.116 kb on - strand at 384.121 kb on - strand at 384.148 kb on - strand at 384.180 kb on - strand at 384.190 kb on + strand at 384.190 kb on + strand at 384.191 kb on - strand at 384.196 kb on + strand at 384.198 kb on + strand at 384.199 kb on - strand at 384.241 kb on - strand at 384.274 kb on + strand at 384.298 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 382,958 + +0.4 382,973 - -2.1 382,976 + +0.1 382,976 + +1.4 382,980 + -2.5 382,981 - -0.8 382,981 - -2.3 382,983 + -1.7 382,983 + -0.7 382,984 - -1.1 382,989 + -3.2 382,990 - -1.1 383,003 + -1.8 383,099 + -1.5 383,136 + HMPREF1078_RS12080 0.12 -3.1 383,136 + HMPREF1078_RS12080 0.12 -3.0 383,136 + HMPREF1078_RS12080 0.12 -1.5 383,139 + HMPREF1078_RS12080 0.12 -1.5 383,139 + HMPREF1078_RS12080 0.12 -0.8 383,173 + HMPREF1078_RS12080 0.15 -0.6 383,257 + HMPREF1078_RS12080 0.22 -3.2 383,310 + HMPREF1078_RS12080 0.27 -3.8 383,322 - HMPREF1078_RS12080 0.28 -1.8 383,387 + HMPREF1078_RS12080 0.33 -2.8 383,403 + HMPREF1078_RS12080 0.34 -3.1 383,403 + HMPREF1078_RS12080 0.34 +0.3 383,404 - HMPREF1078_RS12080 0.34 -2.1 383,404 - HMPREF1078_RS12080 0.34 -2.0 383,412 - HMPREF1078_RS12080 0.35 -2.6 383,521 - HMPREF1078_RS12080 0.44 -3.4 383,521 - HMPREF1078_RS12080 0.44 -2.7 383,533 + HMPREF1078_RS12080 0.45 -1.6 383,533 + HMPREF1078_RS12080 0.45 -2.8 383,533 + HMPREF1078_RS12080 0.45 -2.1 383,534 - HMPREF1078_RS12080 0.45 -2.3 383,536 - HMPREF1078_RS12080 0.45 -1.7 383,619 + HMPREF1078_RS12080 0.52 +0.0 383,619 + HMPREF1078_RS12080 0.52 -0.1 383,619 + HMPREF1078_RS12080 0.52 +0.5 383,620 - HMPREF1078_RS12080 0.53 -0.1 383,620 - HMPREF1078_RS12080 0.53 -0.7 383,620 - HMPREF1078_RS12080 0.53 -1.6 383,620 - HMPREF1078_RS12080 0.53 -2.2 383,626 + HMPREF1078_RS12080 0.53 -0.8 383,627 - HMPREF1078_RS12080 0.53 -2.6 383,627 - HMPREF1078_RS12080 0.53 -1.9 383,627 - HMPREF1078_RS12080 0.53 -2.2 383,629 - HMPREF1078_RS12080 0.53 -2.7 383,640 + HMPREF1078_RS12080 0.54 -3.3 383,676 + HMPREF1078_RS12080 0.57 +0.2 383,677 - HMPREF1078_RS12080 0.57 -2.6 383,759 + HMPREF1078_RS12080 0.64 -2.6 383,788 + HMPREF1078_RS12080 0.67 -3.1 383,788 + HMPREF1078_RS12080 0.67 -1.5 383,789 - HMPREF1078_RS12080 0.67 -3.3 383,790 + HMPREF1078_RS12080 0.67 -2.1 383,790 + HMPREF1078_RS12080 0.67 -3.8 383,790 + HMPREF1078_RS12080 0.67 -2.8 383,790 + HMPREF1078_RS12080 0.67 -1.8 383,791 - HMPREF1078_RS12080 0.67 -1.5 383,837 - HMPREF1078_RS12080 0.71 -3.8 383,937 - HMPREF1078_RS12080 0.79 -3.2 383,977 - HMPREF1078_RS12080 0.82 -2.9 383,977 - HMPREF1078_RS12080 0.82 -1.1 383,977 - HMPREF1078_RS12080 0.82 -2.7 383,977 - HMPREF1078_RS12080 0.82 -0.6 383,977 - HMPREF1078_RS12080 0.82 -1.1 383,980 + HMPREF1078_RS12080 0.83 -2.6 383,980 + HMPREF1078_RS12080 0.83 -2.9 383,980 + HMPREF1078_RS12080 0.83 -3.8 383,981 - HMPREF1078_RS12080 0.83 -2.5 383,983 + HMPREF1078_RS12080 0.83 -1.1 384,033 - HMPREF1078_RS12080 0.87 -3.0 384,033 - HMPREF1078_RS12080 0.87 -2.1 384,040 + HMPREF1078_RS12080 0.88 -1.2 384,040 + HMPREF1078_RS12080 0.88 -2.8 384,040 + HMPREF1078_RS12080 0.88 -1.1 384,040 + HMPREF1078_RS12080 0.88 -0.7 384,041 - HMPREF1078_RS12080 0.88 -0.8 384,041 - HMPREF1078_RS12080 0.88 -1.5 384,041 - HMPREF1078_RS12080 0.88 -1.5 384,041 - HMPREF1078_RS12080 0.88 -4.1 384,041 - HMPREF1078_RS12080 0.88 -1.2 384,062 + HMPREF1078_RS12080 0.90 -2.2 384,062 + HMPREF1078_RS12080 0.90 -3.5 384,062 + HMPREF1078_RS12080 0.90 -1.0 384,062 + HMPREF1078_RS12080 0.90 -1.7 384,062 + HMPREF1078_RS12080 0.90 -3.6 384,063 - HMPREF1078_RS12080 0.90 -0.5 384,063 - HMPREF1078_RS12080 0.90 -2.0 384,115 + -2.5 384,115 + -0.5 384,116 - -2.6 384,121 - -2.2 384,148 - -1.9 384,180 - -3.1 384,190 + +0.9 384,190 + +0.1 384,191 - +0.0 384,196 + -0.4 384,198 + +0.0 384,199 - -0.8 384,241 - +1.0 384,274 + +0.3 384,298 + +1.2
Or see this region's nucleotide sequence