Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS11165

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1078_RS11160 and HMPREF1078_RS11165 are separated by 67 nucleotidesHMPREF1078_RS11165 and HMPREF1078_RS11170 are separated by 61 nucleotides HMPREF1078_RS11160: HMPREF1078_RS11160 - asparagine--tRNA ligase, at 153,298 to 154,704 _RS11160 HMPREF1078_RS11165: HMPREF1078_RS11165 - pseudouridine synthase, at 154,772 to 156,229 _RS11165 HMPREF1078_RS11170: HMPREF1078_RS11170 - adenylosuccinate lyase, at 156,291 to 157,634 _RS11170 Position (kb) 154 155 156 157Strain fitness (log2 ratio) -2 -1 0 1at 154.723 kb on - strandat 154.723 kb on - strandat 154.723 kb on - strandat 154.727 kb on - strandat 154.769 kb on - strandat 154.774 kb on - strandat 156.237 kb on - strandat 156.242 kb on - strandat 156.264 kb on - strandat 156.293 kb on - strandat 156.293 kb on - strandat 156.293 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C)
remove
154,723 - +0.9
154,723 - -1.3
154,723 - +0.0
154,727 - -0.1
154,769 - -2.0
154,774 - -1.5
156,237 - -1.9
156,242 - -1.7
156,264 - -0.5
156,293 - -0.4
156,293 - +0.6
156,293 - +0.7

Or see this region's nucleotide sequence