Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11095 and HMPREF1078_RS11100 are separated by 2 nucleotides HMPREF1078_RS11100 and HMPREF1078_RS11105 are separated by 222 nucleotides HMPREF1078_RS11105 and HMPREF1078_RS11110 are separated by 222 nucleotides HMPREF1078_RS11110 and HMPREF1078_RS11115 are separated by 64 nucleotides
HMPREF1078_RS11095: HMPREF1078_RS11095 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 143,559 to 144,431
_RS11095
HMPREF1078_RS11100: HMPREF1078_RS11100 - (d)CMP kinase, at 144,434 to 145,126
_RS11100
HMPREF1078_RS11105: HMPREF1078_RS11105 - type IX secretion system protein PorQ, at 145,349 to 146,341
_RS11105
HMPREF1078_RS11110: HMPREF1078_RS11110 - energy transducer TonB, at 146,564 to 147,253
_RS11110
HMPREF1078_RS11115: HMPREF1078_RS11115 - polyprenyl synthetase family protein, at 147,318 to 148,292
_RS11115
Position (kb) 145
146
147 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 144.436 kb on - strand at 144.509 kb on - strand, within HMPREF1078_RS11100 at 144.509 kb on - strand, within HMPREF1078_RS11100 at 144.682 kb on - strand, within HMPREF1078_RS11100 at 144.682 kb on - strand, within HMPREF1078_RS11100 at 144.801 kb on - strand, within HMPREF1078_RS11100 at 144.877 kb on - strand, within HMPREF1078_RS11100 at 144.922 kb on - strand, within HMPREF1078_RS11100 at 144.997 kb on - strand, within HMPREF1078_RS11100 at 145.034 kb on - strand, within HMPREF1078_RS11100 at 145.036 kb on - strand, within HMPREF1078_RS11100 at 145.036 kb on - strand, within HMPREF1078_RS11100 at 145.036 kb on - strand, within HMPREF1078_RS11100 at 145.036 kb on - strand, within HMPREF1078_RS11100 at 145.036 kb on - strand, within HMPREF1078_RS11100 at 145.036 kb on - strand, within HMPREF1078_RS11100 at 145.036 kb on - strand, within HMPREF1078_RS11100 at 145.040 kb on - strand, within HMPREF1078_RS11100 at 145.040 kb on - strand, within HMPREF1078_RS11100 at 145.040 kb on - strand, within HMPREF1078_RS11100 at 145.042 kb on - strand, within HMPREF1078_RS11100 at 145.042 kb on - strand, within HMPREF1078_RS11100 at 145.112 kb on - strand at 145.112 kb on - strand at 145.116 kb on - strand at 145.116 kb on - strand at 145.131 kb on - strand at 145.131 kb on - strand at 145.135 kb on - strand at 145.137 kb on - strand at 145.137 kb on - strand at 145.160 kb on - strand at 145.160 kb on - strand at 145.161 kb on + strand at 145.188 kb on + strand at 145.265 kb on - strand at 145.352 kb on + strand at 145.367 kb on - strand at 145.407 kb on + strand at 145.484 kb on - strand, within HMPREF1078_RS11105 at 145.522 kb on + strand, within HMPREF1078_RS11105 at 145.523 kb on - strand, within HMPREF1078_RS11105 at 145.558 kb on + strand, within HMPREF1078_RS11105 at 145.560 kb on + strand, within HMPREF1078_RS11105 at 145.561 kb on - strand, within HMPREF1078_RS11105 at 145.561 kb on - strand, within HMPREF1078_RS11105 at 145.561 kb on - strand, within HMPREF1078_RS11105 at 145.616 kb on - strand, within HMPREF1078_RS11105 at 145.618 kb on - strand, within HMPREF1078_RS11105 at 145.629 kb on + strand, within HMPREF1078_RS11105 at 145.629 kb on + strand, within HMPREF1078_RS11105 at 145.638 kb on - strand, within HMPREF1078_RS11105 at 145.641 kb on + strand, within HMPREF1078_RS11105 at 145.641 kb on + strand, within HMPREF1078_RS11105 at 145.641 kb on + strand, within HMPREF1078_RS11105 at 145.641 kb on + strand, within HMPREF1078_RS11105 at 145.641 kb on + strand, within HMPREF1078_RS11105 at 145.641 kb on + strand, within HMPREF1078_RS11105 at 145.642 kb on - strand, within HMPREF1078_RS11105 at 145.642 kb on - strand, within HMPREF1078_RS11105 at 145.642 kb on - strand, within HMPREF1078_RS11105 at 145.665 kb on + strand, within HMPREF1078_RS11105 at 145.784 kb on - strand, within HMPREF1078_RS11105 at 145.828 kb on - strand, within HMPREF1078_RS11105 at 145.868 kb on - strand, within HMPREF1078_RS11105 at 145.935 kb on + strand, within HMPREF1078_RS11105 at 145.936 kb on - strand, within HMPREF1078_RS11105 at 146.068 kb on - strand, within HMPREF1078_RS11105 at 146.068 kb on - strand, within HMPREF1078_RS11105 at 146.108 kb on + strand, within HMPREF1078_RS11105 at 146.110 kb on + strand, within HMPREF1078_RS11105 at 146.110 kb on + strand, within HMPREF1078_RS11105 at 146.111 kb on - strand, within HMPREF1078_RS11105 at 146.111 kb on - strand, within HMPREF1078_RS11105 at 146.111 kb on - strand, within HMPREF1078_RS11105 at 146.111 kb on - strand, within HMPREF1078_RS11105 at 146.111 kb on - strand, within HMPREF1078_RS11105 at 146.112 kb on + strand, within HMPREF1078_RS11105 at 146.159 kb on + strand, within HMPREF1078_RS11105 at 146.212 kb on + strand, within HMPREF1078_RS11105 at 146.213 kb on - strand, within HMPREF1078_RS11105 at 146.263 kb on + strand at 146.323 kb on + strand at 146.323 kb on + strand at 146.323 kb on + strand at 146.324 kb on - strand at 146.333 kb on - strand at 146.361 kb on + strand at 146.361 kb on + strand at 146.386 kb on + strand at 146.386 kb on + strand at 146.428 kb on - strand at 146.478 kb on + strand at 146.485 kb on - strand at 146.519 kb on + strand at 146.521 kb on + strand at 146.521 kb on + strand at 146.549 kb on + strand at 147.251 kb on + strand at 147.251 kb on + strand at 147.251 kb on + strand at 147.254 kb on + strand at 147.254 kb on + strand at 147.261 kb on + strand at 147.261 kb on + strand at 147.261 kb on + strand at 147.261 kb on + strand at 147.261 kb on + strand at 147.261 kb on + strand at 147.261 kb on + strand at 147.265 kb on + strand at 147.265 kb on + strand at 147.285 kb on + strand at 147.285 kb on + strand at 147.304 kb on + strand at 147.312 kb on + strand at 147.317 kb on + strand at 147.317 kb on + strand at 147.317 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 144,436 - +2.3 144,509 - HMPREF1078_RS11100 0.11 -0.7 144,509 - HMPREF1078_RS11100 0.11 -0.5 144,682 - HMPREF1078_RS11100 0.36 +0.1 144,682 - HMPREF1078_RS11100 0.36 -0.6 144,801 - HMPREF1078_RS11100 0.53 +0.1 144,877 - HMPREF1078_RS11100 0.64 -1.2 144,922 - HMPREF1078_RS11100 0.70 +1.0 144,997 - HMPREF1078_RS11100 0.81 +1.3 145,034 - HMPREF1078_RS11100 0.87 +1.4 145,036 - HMPREF1078_RS11100 0.87 +0.4 145,036 - HMPREF1078_RS11100 0.87 +3.7 145,036 - HMPREF1078_RS11100 0.87 +0.2 145,036 - HMPREF1078_RS11100 0.87 +2.8 145,036 - HMPREF1078_RS11100 0.87 -0.3 145,036 - HMPREF1078_RS11100 0.87 +4.6 145,036 - HMPREF1078_RS11100 0.87 -1.1 145,040 - HMPREF1078_RS11100 0.87 +2.5 145,040 - HMPREF1078_RS11100 0.87 +1.1 145,040 - HMPREF1078_RS11100 0.87 +1.5 145,042 - HMPREF1078_RS11100 0.88 -0.3 145,042 - HMPREF1078_RS11100 0.88 -1.5 145,112 - +1.3 145,112 - +1.3 145,116 - +1.5 145,116 - -0.3 145,131 - +0.9 145,131 - +1.1 145,135 - +0.9 145,137 - -2.5 145,137 - +2.2 145,160 - +1.0 145,160 - +0.3 145,161 + +2.7 145,188 + +1.8 145,265 - +0.9 145,352 + -0.6 145,367 - +0.5 145,407 + +0.9 145,484 - HMPREF1078_RS11105 0.14 -1.5 145,522 + HMPREF1078_RS11105 0.17 -0.5 145,523 - HMPREF1078_RS11105 0.18 +1.3 145,558 + HMPREF1078_RS11105 0.21 -0.4 145,560 + HMPREF1078_RS11105 0.21 +0.2 145,561 - HMPREF1078_RS11105 0.21 +1.9 145,561 - HMPREF1078_RS11105 0.21 +0.3 145,561 - HMPREF1078_RS11105 0.21 +0.8 145,616 - HMPREF1078_RS11105 0.27 -1.0 145,618 - HMPREF1078_RS11105 0.27 +0.9 145,629 + HMPREF1078_RS11105 0.28 +2.4 145,629 + HMPREF1078_RS11105 0.28 -0.8 145,638 - HMPREF1078_RS11105 0.29 -3.3 145,641 + HMPREF1078_RS11105 0.29 -1.8 145,641 + HMPREF1078_RS11105 0.29 -0.6 145,641 + HMPREF1078_RS11105 0.29 +0.1 145,641 + HMPREF1078_RS11105 0.29 -0.1 145,641 + HMPREF1078_RS11105 0.29 -1.0 145,641 + HMPREF1078_RS11105 0.29 +0.1 145,642 - HMPREF1078_RS11105 0.30 -1.4 145,642 - HMPREF1078_RS11105 0.30 -0.6 145,642 - HMPREF1078_RS11105 0.30 +0.1 145,665 + HMPREF1078_RS11105 0.32 -0.7 145,784 - HMPREF1078_RS11105 0.44 -1.5 145,828 - HMPREF1078_RS11105 0.48 -1.2 145,868 - HMPREF1078_RS11105 0.52 +0.3 145,935 + HMPREF1078_RS11105 0.59 -1.6 145,936 - HMPREF1078_RS11105 0.59 -0.5 146,068 - HMPREF1078_RS11105 0.72 +0.3 146,068 - HMPREF1078_RS11105 0.72 -0.8 146,108 + HMPREF1078_RS11105 0.76 -1.5 146,110 + HMPREF1078_RS11105 0.77 +1.9 146,110 + HMPREF1078_RS11105 0.77 -0.6 146,111 - HMPREF1078_RS11105 0.77 +0.9 146,111 - HMPREF1078_RS11105 0.77 -1.0 146,111 - HMPREF1078_RS11105 0.77 +0.3 146,111 - HMPREF1078_RS11105 0.77 -2.0 146,111 - HMPREF1078_RS11105 0.77 -1.3 146,112 + HMPREF1078_RS11105 0.77 -1.5 146,159 + HMPREF1078_RS11105 0.82 -2.3 146,212 + HMPREF1078_RS11105 0.87 +0.3 146,213 - HMPREF1078_RS11105 0.87 -1.9 146,263 + +0.5 146,323 + +0.3 146,323 + +0.7 146,323 + -1.9 146,324 - -1.9 146,333 - -0.1 146,361 + +1.9 146,361 + -1.1 146,386 + -1.4 146,386 + -1.6 146,428 - +0.5 146,478 + +0.4 146,485 - -1.4 146,519 + +2.2 146,521 + +2.0 146,521 + -0.3 146,549 + -2.1 147,251 + +0.8 147,251 + +1.8 147,251 + +2.4 147,254 + +1.3 147,254 + +1.9 147,261 + +2.3 147,261 + +1.6 147,261 + +0.1 147,261 + +1.8 147,261 + +0.6 147,261 + +0.8 147,261 + -0.8 147,265 + +0.3 147,265 + -1.0 147,285 + +2.1 147,285 + +1.0 147,304 + +2.2 147,312 + -1.0 147,317 + -0.8 147,317 + -0.8 147,317 + -1.1
Or see this region's nucleotide sequence