Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS11010

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dextrin from potato starch 2.5 mg/mL (C)
115,592	+		HMPREF1078_RS11005	0.68	-1.6
115,643	+		HMPREF1078_RS11005	0.70	+1.1
115,643	+		HMPREF1078_RS11005	0.70	-1.1
115,679	+		HMPREF1078_RS11005	0.71	-2.6
115,679	+		HMPREF1078_RS11005	0.71	-0.6
115,739	+		HMPREF1078_RS11005	0.73	-2.3
115,739	+		HMPREF1078_RS11005	0.73	-0.1
115,740	-		HMPREF1078_RS11005	0.73	-0.1
115,804	-		HMPREF1078_RS11005	0.75	-1.2
115,806	-		HMPREF1078_RS11005	0.75	-3.1
115,853	+		HMPREF1078_RS11005	0.77	-1.8
115,854	-		HMPREF1078_RS11005	0.77	-0.4
115,854	-		HMPREF1078_RS11005	0.77	-2.4
115,857	+		HMPREF1078_RS11005	0.77	-1.2
115,857	+		HMPREF1078_RS11005	0.77	-1.4
115,857	+		HMPREF1078_RS11005	0.77	-1.5
115,858	-		HMPREF1078_RS11005	0.77	-0.6
115,858	-		HMPREF1078_RS11005	0.77	-2.1
115,862	-		HMPREF1078_RS11005	0.77	+1.1
116,070	+		HMPREF1078_RS11005	0.84	+0.2
116,187	+		HMPREF1078_RS11005	0.88	-1.9
116,188	-		HMPREF1078_RS11005	0.88	-3.0
116,188	-		HMPREF1078_RS11005	0.88	-1.7
116,194	+		HMPREF1078_RS11005	0.88	-2.0
116,201	+		HMPREF1078_RS11005	0.89	-0.7
116,201	+		HMPREF1078_RS11005	0.89	-1.8
116,261	-				-3.0
116,291	+				+0.3
116,291	+				-1.5
116,291	+				-2.1
116,291	+				-1.9
116,292	-				-0.9
116,306	-				+0.5
116,308	-				-2.7
116,308	-				-0.3
116,308	-				-0.3
116,308	-				+1.1
116,309	+				-3.9
116,312	+				-2.3
116,313	-				+0.3
116,313	-				-1.6
116,385	-				-2.8
116,423	+				-2.1
116,423	+				+0.0
116,424	-				-2.8
116,424	-				-2.1
116,424	-				-0.6
116,424	-				-2.8
116,424	-				-3.9
116,459	+				-1.0
116,484	-				+0.1
116,484	-				-1.1
116,530	+				-0.1
116,565	+				-1.6
116,566	-				+0.8
116,566	-				-1.0
116,567	+				-2.1
116,567	+				-1.7
116,568	-				-1.0
116,568	-				-3.0
116,568	-				-2.1
116,698	-				-1.3
116,831	-		HMPREF1078_RS11010	0.16	-0.8
116,850	-		HMPREF1078_RS11010	0.17	-0.1
116,868	-		HMPREF1078_RS11010	0.18	-0.6
116,891	+		HMPREF1078_RS11010	0.19	-2.8
116,891	+		HMPREF1078_RS11010	0.19	-0.5
116,891	+		HMPREF1078_RS11010	0.19	-0.7
116,891	+		HMPREF1078_RS11010	0.19	-1.0
116,892	-		HMPREF1078_RS11010	0.19	-1.6
116,892	-		HMPREF1078_RS11010	0.19	-0.8
116,913	+		HMPREF1078_RS11010	0.20	+0.2
116,914	-		HMPREF1078_RS11010	0.20	-2.5
116,919	-		HMPREF1078_RS11010	0.21	-2.5
116,945	-		HMPREF1078_RS11010	0.22	-0.1
116,954	-		HMPREF1078_RS11010	0.23	-2.8
116,993	+		HMPREF1078_RS11010	0.25	-3.1
116,993	+		HMPREF1078_RS11010	0.25	-2.5
116,993	+		HMPREF1078_RS11010	0.25	-0.9
116,993	+		HMPREF1078_RS11010	0.25	-1.5
116,994	-		HMPREF1078_RS11010	0.25	+0.3
116,994	-		HMPREF1078_RS11010	0.25	-1.1
116,994	-		HMPREF1078_RS11010	0.25	+0.9
116,996	-		HMPREF1078_RS11010	0.25	+0.1
117,037	+		HMPREF1078_RS11010	0.28	-2.5
117,043	-		HMPREF1078_RS11010	0.28	-0.9
117,102	-		HMPREF1078_RS11010	0.31	+0.1
117,102	-		HMPREF1078_RS11010	0.31	-1.0
117,140	+		HMPREF1078_RS11010	0.33	-3.1
117,156	-		HMPREF1078_RS11010	0.34	-0.7
117,160	-		HMPREF1078_RS11010	0.35	-0.3
117,165	+		HMPREF1078_RS11010	0.35	-1.6
117,260	+		HMPREF1078_RS11010	0.40	-2.7
117,299	+		HMPREF1078_RS11010	0.42	-2.9
117,299	+		HMPREF1078_RS11010	0.42	-0.3
117,299	+		HMPREF1078_RS11010	0.42	-1.1
117,299	+		HMPREF1078_RS11010	0.42	-2.5
117,300	-		HMPREF1078_RS11010	0.43	-1.7
117,300	-		HMPREF1078_RS11010	0.43	-1.5
117,328	+		HMPREF1078_RS11010	0.44	-1.8
117,337	+		HMPREF1078_RS11010	0.45	-1.6
117,337	+		HMPREF1078_RS11010	0.45	+0.1
117,338	-		HMPREF1078_RS11010	0.45	-0.5
117,338	-		HMPREF1078_RS11010	0.45	-1.7
117,408	+		HMPREF1078_RS11010	0.49	-2.3
117,453	-		HMPREF1078_RS11010	0.51	-2.2
117,453	-		HMPREF1078_RS11010	0.51	-0.8
117,497	+		HMPREF1078_RS11010	0.54	-2.1
117,589	+		HMPREF1078_RS11010	0.59	-0.5
117,593	-		HMPREF1078_RS11010	0.59	-1.0
117,668	+		HMPREF1078_RS11010	0.64	-2.7
117,694	+		HMPREF1078_RS11010	0.65	-2.5
117,732	-		HMPREF1078_RS11010	0.67	-1.7
117,732	-		HMPREF1078_RS11010	0.67	-1.0
117,732	-		HMPREF1078_RS11010	0.67	-1.1
117,800	+		HMPREF1078_RS11010	0.71	+1.9
117,800	+		HMPREF1078_RS11010	0.71	-0.8
117,802	+		HMPREF1078_RS11010	0.71	-2.4
117,802	+		HMPREF1078_RS11010	0.71	-1.7
117,802	+		HMPREF1078_RS11010	0.71	-2.0
117,802	+		HMPREF1078_RS11010	0.71	-1.4
117,802	+		HMPREF1078_RS11010	0.71	-1.8
117,802	+		HMPREF1078_RS11010	0.71	-0.5
117,802	+		HMPREF1078_RS11010	0.71	-1.8
117,802	+		HMPREF1078_RS11010	0.71	-1.5
117,803	-		HMPREF1078_RS11010	0.71	-0.9
117,883	+		HMPREF1078_RS11010	0.76	-0.1
117,936	-		HMPREF1078_RS11010	0.79	+2.2
117,937	+		HMPREF1078_RS11010	0.79	-1.1
117,937	+		HMPREF1078_RS11010	0.79	-0.5
117,937	+		HMPREF1078_RS11010	0.79	-0.7
117,938	-		HMPREF1078_RS11010	0.79	-1.4
117,938	-		HMPREF1078_RS11010	0.79	-1.8
117,938	-		HMPREF1078_RS11010	0.79	-0.9
117,941	+		HMPREF1078_RS11010	0.79	-1.2
117,942	-		HMPREF1078_RS11010	0.79	-1.5
117,942	-		HMPREF1078_RS11010	0.79	-0.6
117,982	+		HMPREF1078_RS11010	0.81	-2.2
117,983	-		HMPREF1078_RS11010	0.82	-2.5
117,983	-		HMPREF1078_RS11010	0.82	-2.5
118,072	-		HMPREF1078_RS11010	0.87	-1.9
118,091	+		HMPREF1078_RS11010	0.88	-2.2
118,096	-		HMPREF1078_RS11010	0.88	+0.1
118,178	+				-2.8
118,178	+				-0.2
118,179	-				-1.0
118,179	-				-1.4
118,179	-				-0.0
118,238	+				-0.7
118,239	-				-2.0
118,248	-				+1.9
118,308	-				-0.3
118,324	-				+0.7
118,360	+				-1.6
118,361	-				+0.8
118,362	+				+1.3
118,426	+				+0.4
118,427	-				+0.0
118,495	+				-0.1
118,557	+				-1.6
118,611	-				+1.6
118,621	+				+0.8
118,622	-				+0.1
118,626	+				+0.4
118,732	-		HMPREF1078_RS11015	0.16	+0.8
118,921	+		HMPREF1078_RS11015	0.30	+0.5
118,923	-		HMPREF1078_RS11015	0.30	-2.1
118,923	-		HMPREF1078_RS11015	0.30	+1.1
118,923	-		HMPREF1078_RS11015	0.30	+0.1
118,923	-		HMPREF1078_RS11015	0.30	-0.0
118,927	+		HMPREF1078_RS11015	0.30	+0.1
118,992	+		HMPREF1078_RS11015	0.35	-1.6
119,052	+		HMPREF1078_RS11015	0.40	+1.2
119,052	+		HMPREF1078_RS11015	0.40	-0.3
119,057	+		HMPREF1078_RS11015	0.40	-0.9
119,058	-		HMPREF1078_RS11015	0.40	-0.2
119,138	+		HMPREF1078_RS11015	0.46	+0.2
119,152	-		HMPREF1078_RS11015	0.47	-1.8
119,152	-		HMPREF1078_RS11015	0.47	+0.0
119,265	-		HMPREF1078_RS11015	0.56	-0.0