Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10760 and HMPREF1078_RS10765 are separated by 2 nucleotides HMPREF1078_RS10765 and HMPREF1078_RS10770 are separated by 589 nucleotides HMPREF1078_RS10770 and HMPREF1078_RS10775 are separated by 288 nucleotides
HMPREF1078_RS10760: HMPREF1078_RS10760 - 30S ribosomal protein S18, at 62,717 to 62,986
_RS10760
HMPREF1078_RS10765: HMPREF1078_RS10765 - 30S ribosomal protein S6, at 62,989 to 63,342
_RS10765
HMPREF1078_RS10770: HMPREF1078_RS10770 - DUF4248 domain-containing protein, at 63,932 to 64,105
_RS10770
HMPREF1078_RS10775: HMPREF1078_RS10775 - alpha/beta hydrolase, at 64,394 to 65,395
_RS10775
Position (kb) 63
64
65 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 63.461 kb on + strand at 63.461 kb on + strand at 63.464 kb on + strand at 63.473 kb on + strand at 63.521 kb on - strand at 63.552 kb on + strand at 63.570 kb on + strand at 63.658 kb on - strand at 63.707 kb on + strand at 63.713 kb on + strand at 63.719 kb on + strand at 63.726 kb on + strand at 63.726 kb on + strand at 63.726 kb on + strand at 63.728 kb on + strand at 63.728 kb on + strand at 63.728 kb on + strand at 63.728 kb on + strand at 63.744 kb on + strand at 63.744 kb on + strand at 63.745 kb on - strand at 63.762 kb on + strand at 63.934 kb on - strand at 63.969 kb on - strand, within HMPREF1078_RS10770 at 63.981 kb on - strand, within HMPREF1078_RS10770 at 64.140 kb on - strand at 64.146 kb on + strand at 64.168 kb on - strand at 64.177 kb on + strand at 64.177 kb on + strand at 64.177 kb on + strand at 64.178 kb on - strand at 64.236 kb on + strand at 64.259 kb on + strand at 64.304 kb on + strand at 64.341 kb on - strand at 64.394 kb on - strand at 64.422 kb on + strand at 64.438 kb on - strand at 64.438 kb on - strand at 64.457 kb on + strand at 64.471 kb on - strand at 64.481 kb on - strand at 64.561 kb on - strand, within HMPREF1078_RS10775 at 64.586 kb on + strand, within HMPREF1078_RS10775 at 64.587 kb on - strand, within HMPREF1078_RS10775 at 64.587 kb on - strand, within HMPREF1078_RS10775 at 64.587 kb on - strand, within HMPREF1078_RS10775 at 64.588 kb on + strand, within HMPREF1078_RS10775 at 64.588 kb on + strand, within HMPREF1078_RS10775 at 64.589 kb on - strand, within HMPREF1078_RS10775 at 64.590 kb on + strand, within HMPREF1078_RS10775 at 64.590 kb on + strand, within HMPREF1078_RS10775 at 64.590 kb on + strand, within HMPREF1078_RS10775 at 64.590 kb on + strand, within HMPREF1078_RS10775 at 64.590 kb on + strand, within HMPREF1078_RS10775 at 64.591 kb on - strand, within HMPREF1078_RS10775 at 64.591 kb on - strand, within HMPREF1078_RS10775 at 64.591 kb on - strand, within HMPREF1078_RS10775 at 64.654 kb on + strand, within HMPREF1078_RS10775 at 64.654 kb on + strand, within HMPREF1078_RS10775 at 64.662 kb on - strand, within HMPREF1078_RS10775 at 64.662 kb on - strand, within HMPREF1078_RS10775 at 64.666 kb on + strand, within HMPREF1078_RS10775 at 64.959 kb on + strand, within HMPREF1078_RS10775 at 64.985 kb on + strand, within HMPREF1078_RS10775 at 64.986 kb on + strand, within HMPREF1078_RS10775 at 64.987 kb on - strand, within HMPREF1078_RS10775 at 64.987 kb on - strand, within HMPREF1078_RS10775 at 65.009 kb on + strand, within HMPREF1078_RS10775 at 65.009 kb on + strand, within HMPREF1078_RS10775 at 65.017 kb on + strand, within HMPREF1078_RS10775 at 65.049 kb on + strand, within HMPREF1078_RS10775 at 65.050 kb on - strand, within HMPREF1078_RS10775 at 65.051 kb on + strand, within HMPREF1078_RS10775 at 65.052 kb on - strand, within HMPREF1078_RS10775 at 65.053 kb on + strand, within HMPREF1078_RS10775 at 65.054 kb on - strand, within HMPREF1078_RS10775 at 65.056 kb on + strand, within HMPREF1078_RS10775 at 65.057 kb on - strand, within HMPREF1078_RS10775 at 65.074 kb on + strand, within HMPREF1078_RS10775
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 63,461 + +0.5 63,461 + -0.8 63,464 + +1.7 63,473 + +1.7 63,521 - -0.4 63,552 + +0.1 63,570 + +0.6 63,658 - +0.3 63,707 + +0.1 63,713 + -0.7 63,719 + +0.2 63,726 + -1.0 63,726 + +1.9 63,726 + -0.6 63,728 + +0.2 63,728 + +0.4 63,728 + -0.4 63,728 + -1.3 63,744 + -0.7 63,744 + +0.3 63,745 - -0.8 63,762 + -0.0 63,934 - +0.4 63,969 - HMPREF1078_RS10770 0.21 -1.7 63,981 - HMPREF1078_RS10770 0.28 -1.6 64,140 - +1.0 64,146 + +0.1 64,168 - -0.7 64,177 + -0.2 64,177 + +0.0 64,177 + +2.2 64,178 - -0.2 64,236 + -0.0 64,259 + +0.9 64,304 + +0.9 64,341 - +0.0 64,394 - +0.1 64,422 + -0.3 64,438 - +0.8 64,438 - +0.5 64,457 + -0.9 64,471 - -0.6 64,481 - -0.3 64,561 - HMPREF1078_RS10775 0.17 -1.5 64,586 + HMPREF1078_RS10775 0.19 -0.5 64,587 - HMPREF1078_RS10775 0.19 +1.2 64,587 - HMPREF1078_RS10775 0.19 +0.6 64,587 - HMPREF1078_RS10775 0.19 -2.6 64,588 + HMPREF1078_RS10775 0.19 -1.3 64,588 + HMPREF1078_RS10775 0.19 -0.4 64,589 - HMPREF1078_RS10775 0.19 +0.9 64,590 + HMPREF1078_RS10775 0.20 -0.7 64,590 + HMPREF1078_RS10775 0.20 +1.6 64,590 + HMPREF1078_RS10775 0.20 +0.0 64,590 + HMPREF1078_RS10775 0.20 -0.4 64,590 + HMPREF1078_RS10775 0.20 -0.7 64,591 - HMPREF1078_RS10775 0.20 +0.3 64,591 - HMPREF1078_RS10775 0.20 +1.0 64,591 - HMPREF1078_RS10775 0.20 -0.3 64,654 + HMPREF1078_RS10775 0.26 -0.2 64,654 + HMPREF1078_RS10775 0.26 -0.6 64,662 - HMPREF1078_RS10775 0.27 +2.9 64,662 - HMPREF1078_RS10775 0.27 -0.2 64,666 + HMPREF1078_RS10775 0.27 -0.6 64,959 + HMPREF1078_RS10775 0.56 +0.9 64,985 + HMPREF1078_RS10775 0.59 +1.1 64,986 + HMPREF1078_RS10775 0.59 +0.3 64,987 - HMPREF1078_RS10775 0.59 -0.7 64,987 - HMPREF1078_RS10775 0.59 +0.2 65,009 + HMPREF1078_RS10775 0.61 +2.3 65,009 + HMPREF1078_RS10775 0.61 +0.7 65,017 + HMPREF1078_RS10775 0.62 -0.6 65,049 + HMPREF1078_RS10775 0.65 -1.6 65,050 - HMPREF1078_RS10775 0.65 +0.0 65,051 + HMPREF1078_RS10775 0.66 +0.3 65,052 - HMPREF1078_RS10775 0.66 +0.7 65,053 + HMPREF1078_RS10775 0.66 -0.8 65,054 - HMPREF1078_RS10775 0.66 +1.0 65,056 + HMPREF1078_RS10775 0.66 -2.3 65,057 - HMPREF1078_RS10775 0.66 -0.5 65,074 + HMPREF1078_RS10775 0.68 +0.1
Or see this region's nucleotide sequence