Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS10660

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS10655 and HMPREF1078_RS10660 are separated by 119 nucleotidesHMPREF1078_RS10660 and HMPREF1078_RS10665 are separated by 31 nucleotides HMPREF1078_RS10655: HMPREF1078_RS10655 - glutamate-5-semialdehyde dehydrogenase, at 34,617 to 35,861 _RS10655 HMPREF1078_RS10660: HMPREF1078_RS10660 - acetylornithine carbamoyltransferase, at 35,981 to 36,946 _RS10660 HMPREF1078_RS10665: HMPREF1078_RS10665 - outer membrane beta-barrel family protein, at 36,978 to 39,077 _RS10665 Position (kb) 35 36 37Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 35.093 kb on - strand, within HMPREF1078_RS10655at 35.127 kb on - strand, within HMPREF1078_RS10655at 35.227 kb on - strand, within HMPREF1078_RS10655at 35.227 kb on - strand, within HMPREF1078_RS10655at 35.273 kb on + strand, within HMPREF1078_RS10655at 35.282 kb on + strand, within HMPREF1078_RS10655at 35.283 kb on - strand, within HMPREF1078_RS10655at 35.402 kb on - strand, within HMPREF1078_RS10655at 35.415 kb on + strand, within HMPREF1078_RS10655at 35.450 kb on + strand, within HMPREF1078_RS10655at 35.450 kb on + strand, within HMPREF1078_RS10655at 35.450 kb on + strand, within HMPREF1078_RS10655at 35.450 kb on + strand, within HMPREF1078_RS10655at 35.451 kb on - strand, within HMPREF1078_RS10655at 35.454 kb on + strand, within HMPREF1078_RS10655at 35.548 kb on + strand, within HMPREF1078_RS10655at 35.570 kb on + strand, within HMPREF1078_RS10655at 35.613 kb on + strand, within HMPREF1078_RS10655at 35.700 kb on + strand, within HMPREF1078_RS10655at 35.710 kb on + strand, within HMPREF1078_RS10655at 35.710 kb on + strand, within HMPREF1078_RS10655at 35.711 kb on - strand, within HMPREF1078_RS10655at 35.714 kb on + strand, within HMPREF1078_RS10655at 35.779 kb on + strandat 35.779 kb on + strandat 35.779 kb on + strandat 35.780 kb on - strandat 35.820 kb on + strandat 35.826 kb on + strandat 35.826 kb on + strandat 35.826 kb on + strandat 35.827 kb on - strandat 35.828 kb on + strandat 35.828 kb on + strandat 35.829 kb on - strandat 35.829 kb on - strandat 35.859 kb on + strandat 35.877 kb on + strandat 35.878 kb on - strandat 35.881 kb on - strandat 35.883 kb on + strandat 35.888 kb on + strandat 35.888 kb on + strandat 35.889 kb on - strandat 35.902 kb on + strandat 35.908 kb on + strandat 35.909 kb on - strandat 35.980 kb on + strandat 35.980 kb on + strandat 36.000 kb on + strandat 36.001 kb on - strandat 36.105 kb on + strand, within HMPREF1078_RS10660at 36.105 kb on + strand, within HMPREF1078_RS10660at 36.105 kb on + strand, within HMPREF1078_RS10660at 36.163 kb on - strand, within HMPREF1078_RS10660at 36.163 kb on - strand, within HMPREF1078_RS10660at 36.167 kb on - strand, within HMPREF1078_RS10660at 36.288 kb on - strand, within HMPREF1078_RS10660at 36.306 kb on + strand, within HMPREF1078_RS10660at 36.306 kb on + strand, within HMPREF1078_RS10660at 36.307 kb on - strand, within HMPREF1078_RS10660at 36.358 kb on - strand, within HMPREF1078_RS10660at 36.358 kb on - strand, within HMPREF1078_RS10660at 36.358 kb on - strand, within HMPREF1078_RS10660at 36.461 kb on + strand, within HMPREF1078_RS10660at 36.636 kb on + strand, within HMPREF1078_RS10660at 36.641 kb on + strand, within HMPREF1078_RS10660at 36.642 kb on - strand, within HMPREF1078_RS10660at 36.642 kb on - strand, within HMPREF1078_RS10660at 36.680 kb on + strand, within HMPREF1078_RS10660at 36.701 kb on + strand, within HMPREF1078_RS10660at 36.717 kb on - strand, within HMPREF1078_RS10660at 36.820 kb on + strand, within HMPREF1078_RS10660at 36.820 kb on + strand, within HMPREF1078_RS10660at 36.821 kb on - strand, within HMPREF1078_RS10660at 36.944 kb on + strandat 36.986 kb on + strandat 36.988 kb on + strandat 36.988 kb on + strandat 36.989 kb on - strandat 37.095 kb on - strandat 37.146 kb on - strandat 37.538 kb on - strand, within HMPREF1078_RS10665at 37.538 kb on - strand, within HMPREF1078_RS10665at 37.544 kb on - strand, within HMPREF1078_RS10665at 37.639 kb on + strand, within HMPREF1078_RS10665at 37.672 kb on + strand, within HMPREF1078_RS10665at 37.672 kb on + strand, within HMPREF1078_RS10665at 37.673 kb on - strand, within HMPREF1078_RS10665at 37.764 kb on + strand, within HMPREF1078_RS10665at 37.907 kb on + strand, within HMPREF1078_RS10665at 37.908 kb on - strand, within HMPREF1078_RS10665at 37.909 kb on + strand, within HMPREF1078_RS10665at 37.909 kb on + strand, within HMPREF1078_RS10665at 37.909 kb on + strand, within HMPREF1078_RS10665

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C)
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35,093 - HMPREF1078_RS10655 0.38 -1.7
35,127 - HMPREF1078_RS10655 0.41 -1.7
35,227 - HMPREF1078_RS10655 0.49 -1.9
35,227 - HMPREF1078_RS10655 0.49 -2.8
35,273 + HMPREF1078_RS10655 0.53 -2.8
35,282 + HMPREF1078_RS10655 0.53 -2.0
35,283 - HMPREF1078_RS10655 0.53 -2.1
35,402 - HMPREF1078_RS10655 0.63 -0.6
35,415 + HMPREF1078_RS10655 0.64 -3.5
35,450 + HMPREF1078_RS10655 0.67 -0.5
35,450 + HMPREF1078_RS10655 0.67 -1.1
35,450 + HMPREF1078_RS10655 0.67 +0.7
35,450 + HMPREF1078_RS10655 0.67 -4.1
35,451 - HMPREF1078_RS10655 0.67 -2.0
35,454 + HMPREF1078_RS10655 0.67 -0.6
35,548 + HMPREF1078_RS10655 0.75 -2.3
35,570 + HMPREF1078_RS10655 0.77 -2.3
35,613 + HMPREF1078_RS10655 0.80 -2.3
35,700 + HMPREF1078_RS10655 0.87 -4.3
35,710 + HMPREF1078_RS10655 0.88 -0.1
35,710 + HMPREF1078_RS10655 0.88 -0.7
35,711 - HMPREF1078_RS10655 0.88 -2.7
35,714 + HMPREF1078_RS10655 0.88 -2.8
35,779 + -1.9
35,779 + -2.7
35,779 + -2.1
35,780 - -2.9
35,820 + -0.7
35,826 + -0.9
35,826 + -2.7
35,826 + -3.2
35,827 - -1.4
35,828 + +1.1
35,828 + -3.2
35,829 - -2.1
35,829 - -3.3
35,859 + -1.3
35,877 + -0.6
35,878 - -0.6
35,881 - -0.1
35,883 + -0.3
35,888 + +0.1
35,888 + -0.2
35,889 - -1.0
35,902 + +0.6
35,908 + +0.5
35,909 - +0.7
35,980 + -1.9
35,980 + -1.9
36,000 + -2.8
36,001 - -3.9
36,105 + HMPREF1078_RS10660 0.13 -1.2
36,105 + HMPREF1078_RS10660 0.13 -1.7
36,105 + HMPREF1078_RS10660 0.13 -0.4
36,163 - HMPREF1078_RS10660 0.19 -2.2
36,163 - HMPREF1078_RS10660 0.19 -4.0
36,167 - HMPREF1078_RS10660 0.19 -1.6
36,288 - HMPREF1078_RS10660 0.32 -3.4
36,306 + HMPREF1078_RS10660 0.34 -1.5
36,306 + HMPREF1078_RS10660 0.34 -1.5
36,307 - HMPREF1078_RS10660 0.34 -0.6
36,358 - HMPREF1078_RS10660 0.39 -1.5
36,358 - HMPREF1078_RS10660 0.39 -3.5
36,358 - HMPREF1078_RS10660 0.39 -3.5
36,461 + HMPREF1078_RS10660 0.50 -2.2
36,636 + HMPREF1078_RS10660 0.68 -2.6
36,641 + HMPREF1078_RS10660 0.68 -2.3
36,642 - HMPREF1078_RS10660 0.68 -4.0
36,642 - HMPREF1078_RS10660 0.68 -3.4
36,680 + HMPREF1078_RS10660 0.72 -3.8
36,701 + HMPREF1078_RS10660 0.75 -2.5
36,717 - HMPREF1078_RS10660 0.76 -3.4
36,820 + HMPREF1078_RS10660 0.87 -2.3
36,820 + HMPREF1078_RS10660 0.87 -0.7
36,821 - HMPREF1078_RS10660 0.87 -2.4
36,944 + +0.6
36,986 + +0.6
36,988 + +0.8
36,988 + -0.3
36,989 - -0.8
37,095 - -1.4
37,146 - +0.2
37,538 - HMPREF1078_RS10665 0.27 +0.5
37,538 - HMPREF1078_RS10665 0.27 -0.5
37,544 - HMPREF1078_RS10665 0.27 -0.6
37,639 + HMPREF1078_RS10665 0.31 -0.3
37,672 + HMPREF1078_RS10665 0.33 +0.5
37,672 + HMPREF1078_RS10665 0.33 +0.4
37,673 - HMPREF1078_RS10665 0.33 +0.5
37,764 + HMPREF1078_RS10665 0.37 +0.0
37,907 + HMPREF1078_RS10665 0.44 -1.8
37,908 - HMPREF1078_RS10665 0.44 -1.0
37,909 + HMPREF1078_RS10665 0.44 +2.0
37,909 + HMPREF1078_RS10665 0.44 +0.7
37,909 + HMPREF1078_RS10665 0.44 +0.2

Or see this region's nucleotide sequence