Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS10650

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS10645 and HMPREF1078_RS10650 overlap by 23 nucleotidesHMPREF1078_RS10650 and HMPREF1078_RS10655 are separated by 19 nucleotides HMPREF1078_RS10645: HMPREF1078_RS10645 - AMP-binding protein, at 31,825 to 33,495 _RS10645 HMPREF1078_RS10650: HMPREF1078_RS10650 - glutamate 5-kinase, at 33,473 to 34,597 _RS10650 HMPREF1078_RS10655: HMPREF1078_RS10655 - glutamate-5-semialdehyde dehydrogenase, at 34,617 to 35,861 _RS10655 Position (kb) 33 34 35Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 32.493 kb on + strand, within HMPREF1078_RS10645at 32.527 kb on - strand, within HMPREF1078_RS10645at 32.590 kb on + strand, within HMPREF1078_RS10645at 32.591 kb on - strand, within HMPREF1078_RS10645at 32.626 kb on + strand, within HMPREF1078_RS10645at 32.655 kb on + strand, within HMPREF1078_RS10645at 32.670 kb on - strand, within HMPREF1078_RS10645at 32.706 kb on + strand, within HMPREF1078_RS10645at 32.727 kb on - strand, within HMPREF1078_RS10645at 32.767 kb on + strand, within HMPREF1078_RS10645at 32.773 kb on - strand, within HMPREF1078_RS10645at 32.818 kb on + strand, within HMPREF1078_RS10645at 32.938 kb on + strand, within HMPREF1078_RS10645at 33.013 kb on - strand, within HMPREF1078_RS10645at 33.050 kb on - strand, within HMPREF1078_RS10645at 33.203 kb on + strand, within HMPREF1078_RS10645at 33.314 kb on - strand, within HMPREF1078_RS10645at 33.410 kb on + strandat 33.444 kb on - strandat 33.546 kb on + strandat 33.628 kb on - strand, within HMPREF1078_RS10650at 33.628 kb on - strand, within HMPREF1078_RS10650at 33.694 kb on - strand, within HMPREF1078_RS10650at 33.737 kb on + strand, within HMPREF1078_RS10650at 33.737 kb on + strand, within HMPREF1078_RS10650at 33.855 kb on - strand, within HMPREF1078_RS10650at 33.875 kb on - strand, within HMPREF1078_RS10650at 33.882 kb on + strand, within HMPREF1078_RS10650at 33.882 kb on + strand, within HMPREF1078_RS10650at 33.883 kb on - strand, within HMPREF1078_RS10650at 33.883 kb on - strand, within HMPREF1078_RS10650at 33.895 kb on + strand, within HMPREF1078_RS10650at 34.035 kb on + strand, within HMPREF1078_RS10650at 34.039 kb on + strand, within HMPREF1078_RS10650at 34.112 kb on + strand, within HMPREF1078_RS10650at 34.113 kb on - strand, within HMPREF1078_RS10650at 34.113 kb on - strand, within HMPREF1078_RS10650at 34.113 kb on - strand, within HMPREF1078_RS10650at 34.156 kb on + strand, within HMPREF1078_RS10650at 34.356 kb on + strand, within HMPREF1078_RS10650at 34.357 kb on - strand, within HMPREF1078_RS10650at 34.357 kb on - strand, within HMPREF1078_RS10650at 34.389 kb on + strand, within HMPREF1078_RS10650at 34.390 kb on - strand, within HMPREF1078_RS10650at 34.523 kb on - strandat 34.569 kb on + strandat 34.570 kb on - strandat 34.575 kb on - strandat 34.611 kb on - strandat 34.611 kb on - strandat 34.630 kb on + strandat 34.640 kb on + strandat 34.641 kb on - strandat 34.703 kb on - strandat 34.772 kb on + strand, within HMPREF1078_RS10655at 34.963 kb on - strand, within HMPREF1078_RS10655at 34.963 kb on - strand, within HMPREF1078_RS10655at 35.093 kb on - strand, within HMPREF1078_RS10655at 35.127 kb on - strand, within HMPREF1078_RS10655at 35.227 kb on - strand, within HMPREF1078_RS10655at 35.227 kb on - strand, within HMPREF1078_RS10655at 35.273 kb on + strand, within HMPREF1078_RS10655at 35.282 kb on + strand, within HMPREF1078_RS10655at 35.283 kb on - strand, within HMPREF1078_RS10655at 35.402 kb on - strand, within HMPREF1078_RS10655at 35.415 kb on + strand, within HMPREF1078_RS10655at 35.450 kb on + strand, within HMPREF1078_RS10655at 35.450 kb on + strand, within HMPREF1078_RS10655at 35.450 kb on + strand, within HMPREF1078_RS10655at 35.450 kb on + strand, within HMPREF1078_RS10655at 35.451 kb on - strand, within HMPREF1078_RS10655at 35.454 kb on + strand, within HMPREF1078_RS10655at 35.548 kb on + strand, within HMPREF1078_RS10655at 35.570 kb on + strand, within HMPREF1078_RS10655

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C)
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32,493 + HMPREF1078_RS10645 0.40 -0.7
32,527 - HMPREF1078_RS10645 0.42 -4.7
32,590 + HMPREF1078_RS10645 0.46 -0.1
32,591 - HMPREF1078_RS10645 0.46 -2.3
32,626 + HMPREF1078_RS10645 0.48 +0.3
32,655 + HMPREF1078_RS10645 0.50 -1.4
32,670 - HMPREF1078_RS10645 0.51 -3.8
32,706 + HMPREF1078_RS10645 0.53 -3.9
32,727 - HMPREF1078_RS10645 0.54 -0.7
32,767 + HMPREF1078_RS10645 0.56 +0.2
32,773 - HMPREF1078_RS10645 0.57 -1.9
32,818 + HMPREF1078_RS10645 0.59 +0.6
32,938 + HMPREF1078_RS10645 0.67 +1.2
33,013 - HMPREF1078_RS10645 0.71 -2.8
33,050 - HMPREF1078_RS10645 0.73 -2.2
33,203 + HMPREF1078_RS10645 0.82 -0.5
33,314 - HMPREF1078_RS10645 0.89 +1.9
33,410 + +1.5
33,444 - -1.0
33,546 + -4.0
33,628 - HMPREF1078_RS10650 0.14 -0.5
33,628 - HMPREF1078_RS10650 0.14 -3.7
33,694 - HMPREF1078_RS10650 0.20 -4.3
33,737 + HMPREF1078_RS10650 0.23 +1.1
33,737 + HMPREF1078_RS10650 0.23 -1.8
33,855 - HMPREF1078_RS10650 0.34 -2.6
33,875 - HMPREF1078_RS10650 0.36 -2.6
33,882 + HMPREF1078_RS10650 0.36 -3.8
33,882 + HMPREF1078_RS10650 0.36 -0.5
33,883 - HMPREF1078_RS10650 0.36 -3.8
33,883 - HMPREF1078_RS10650 0.36 -4.1
33,895 + HMPREF1078_RS10650 0.38 -3.8
34,035 + HMPREF1078_RS10650 0.50 -2.5
34,039 + HMPREF1078_RS10650 0.50 -3.9
34,112 + HMPREF1078_RS10650 0.57 -1.8
34,113 - HMPREF1078_RS10650 0.57 -2.1
34,113 - HMPREF1078_RS10650 0.57 -0.5
34,113 - HMPREF1078_RS10650 0.57 -0.6
34,156 + HMPREF1078_RS10650 0.61 -3.2
34,356 + HMPREF1078_RS10650 0.78 -1.5
34,357 - HMPREF1078_RS10650 0.79 -2.0
34,357 - HMPREF1078_RS10650 0.79 -2.2
34,389 + HMPREF1078_RS10650 0.81 -3.4
34,390 - HMPREF1078_RS10650 0.82 -3.3
34,523 - -3.4
34,569 + -1.8
34,570 - +0.1
34,575 - -1.4
34,611 - -1.4
34,611 - -2.5
34,630 + -3.2
34,640 + -1.9
34,641 - -2.5
34,703 - -2.2
34,772 + HMPREF1078_RS10655 0.12 -1.0
34,963 - HMPREF1078_RS10655 0.28 +0.9
34,963 - HMPREF1078_RS10655 0.28 -3.9
35,093 - HMPREF1078_RS10655 0.38 -1.7
35,127 - HMPREF1078_RS10655 0.41 -1.7
35,227 - HMPREF1078_RS10655 0.49 -1.9
35,227 - HMPREF1078_RS10655 0.49 -2.8
35,273 + HMPREF1078_RS10655 0.53 -2.8
35,282 + HMPREF1078_RS10655 0.53 -2.0
35,283 - HMPREF1078_RS10655 0.53 -2.1
35,402 - HMPREF1078_RS10655 0.63 -0.6
35,415 + HMPREF1078_RS10655 0.64 -3.5
35,450 + HMPREF1078_RS10655 0.67 -0.5
35,450 + HMPREF1078_RS10655 0.67 -1.1
35,450 + HMPREF1078_RS10655 0.67 +0.7
35,450 + HMPREF1078_RS10655 0.67 -4.1
35,451 - HMPREF1078_RS10655 0.67 -2.0
35,454 + HMPREF1078_RS10655 0.67 -0.6
35,548 + HMPREF1078_RS10655 0.75 -2.3
35,570 + HMPREF1078_RS10655 0.77 -2.3

Or see this region's nucleotide sequence