Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS10435

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS10430 and HMPREF1078_RS10435 are separated by 322 nucleotidesHMPREF1078_RS10435 and HMPREF1078_RS10440 are separated by 100 nucleotidesHMPREF1078_RS10440 and HMPREF1078_RS10445 are separated by 20 nucleotides HMPREF1078_RS10430: HMPREF1078_RS10430 - amidophosphoribosyltransferase, at 720,443 to 721,849 _RS10430 HMPREF1078_RS10435: HMPREF1078_RS10435 - tRNA-Thr, at 722,172 to 722,245 _RS10435 HMPREF1078_RS10440: HMPREF1078_RS10440 - DUF4199 domain-containing protein, at 722,346 to 722,876 _RS10440 HMPREF1078_RS10445: HMPREF1078_RS10445 - glycosyltransferase, at 722,897 to 723,850 _RS10445 Position (kb) 722 723Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 721.242 kb on - strand, within HMPREF1078_RS10430at 721.259 kb on - strand, within HMPREF1078_RS10430at 721.263 kb on - strand, within HMPREF1078_RS10430at 721.291 kb on - strand, within HMPREF1078_RS10430at 721.291 kb on - strand, within HMPREF1078_RS10430at 721.310 kb on + strand, within HMPREF1078_RS10430at 721.310 kb on + strand, within HMPREF1078_RS10430at 721.310 kb on + strand, within HMPREF1078_RS10430at 721.310 kb on + strand, within HMPREF1078_RS10430at 721.311 kb on - strand, within HMPREF1078_RS10430at 721.311 kb on - strand, within HMPREF1078_RS10430at 721.311 kb on - strand, within HMPREF1078_RS10430at 721.312 kb on + strand, within HMPREF1078_RS10430at 721.312 kb on + strand, within HMPREF1078_RS10430at 721.315 kb on + strand, within HMPREF1078_RS10430at 721.315 kb on + strand, within HMPREF1078_RS10430at 721.316 kb on - strand, within HMPREF1078_RS10430at 721.316 kb on - strand, within HMPREF1078_RS10430at 721.316 kb on - strand, within HMPREF1078_RS10430at 721.316 kb on - strand, within HMPREF1078_RS10430at 721.319 kb on - strand, within HMPREF1078_RS10430at 721.319 kb on - strand, within HMPREF1078_RS10430at 721.324 kb on + strand, within HMPREF1078_RS10430at 721.355 kb on - strand, within HMPREF1078_RS10430at 721.355 kb on - strand, within HMPREF1078_RS10430at 721.355 kb on - strand, within HMPREF1078_RS10430at 721.740 kb on + strandat 721.740 kb on + strandat 721.740 kb on + strandat 721.740 kb on + strandat 721.741 kb on - strandat 721.741 kb on - strandat 721.741 kb on - strandat 721.741 kb on - strandat 721.743 kb on + strandat 721.744 kb on + strandat 721.744 kb on + strandat 721.744 kb on + strandat 721.745 kb on - strandat 721.780 kb on + strandat 721.780 kb on + strandat 721.781 kb on - strandat 721.781 kb on - strandat 721.781 kb on - strandat 721.795 kb on - strandat 721.822 kb on + strandat 721.823 kb on - strandat 721.823 kb on - strandat 721.828 kb on + strandat 721.852 kb on + strandat 721.852 kb on + strandat 721.853 kb on - strandat 721.853 kb on - strandat 721.856 kb on + strandat 721.890 kb on + strandat 721.899 kb on - strandat 721.938 kb on + strandat 721.978 kb on - strandat 722.003 kb on - strandat 722.180 kb on - strand, within HMPREF1078_RS10435at 722.279 kb on + strandat 722.288 kb on + strandat 722.288 kb on + strandat 722.288 kb on + strandat 722.289 kb on - strandat 722.290 kb on + strandat 722.291 kb on - strandat 722.307 kb on + strandat 722.342 kb on + strandat 722.365 kb on + strandat 722.388 kb on + strandat 722.399 kb on + strand, within HMPREF1078_RS10440at 722.399 kb on + strand, within HMPREF1078_RS10440at 722.407 kb on + strand, within HMPREF1078_RS10440at 722.407 kb on + strand, within HMPREF1078_RS10440at 722.407 kb on + strand, within HMPREF1078_RS10440at 722.409 kb on + strand, within HMPREF1078_RS10440at 722.409 kb on + strand, within HMPREF1078_RS10440at 722.462 kb on + strand, within HMPREF1078_RS10440at 722.472 kb on + strand, within HMPREF1078_RS10440at 722.472 kb on + strand, within HMPREF1078_RS10440at 722.482 kb on + strand, within HMPREF1078_RS10440at 722.508 kb on + strand, within HMPREF1078_RS10440at 722.539 kb on + strand, within HMPREF1078_RS10440at 722.539 kb on + strand, within HMPREF1078_RS10440at 722.539 kb on + strand, within HMPREF1078_RS10440at 722.589 kb on + strand, within HMPREF1078_RS10440at 722.589 kb on + strand, within HMPREF1078_RS10440at 722.629 kb on + strand, within HMPREF1078_RS10440at 722.686 kb on + strand, within HMPREF1078_RS10440at 722.806 kb on + strand, within HMPREF1078_RS10440at 722.806 kb on + strand, within HMPREF1078_RS10440at 722.806 kb on + strand, within HMPREF1078_RS10440

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C)
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721,242 - HMPREF1078_RS10430 0.57 -0.8
721,259 - HMPREF1078_RS10430 0.58 -0.6
721,263 - HMPREF1078_RS10430 0.58 +0.1
721,291 - HMPREF1078_RS10430 0.60 -0.6
721,291 - HMPREF1078_RS10430 0.60 +0.0
721,310 + HMPREF1078_RS10430 0.62 -1.0
721,310 + HMPREF1078_RS10430 0.62 -0.6
721,310 + HMPREF1078_RS10430 0.62 -0.4
721,310 + HMPREF1078_RS10430 0.62 -0.4
721,311 - HMPREF1078_RS10430 0.62 -0.7
721,311 - HMPREF1078_RS10430 0.62 -1.8
721,311 - HMPREF1078_RS10430 0.62 +0.7
721,312 + HMPREF1078_RS10430 0.62 -0.9
721,312 + HMPREF1078_RS10430 0.62 -0.3
721,315 + HMPREF1078_RS10430 0.62 -3.3
721,315 + HMPREF1078_RS10430 0.62 +0.4
721,316 - HMPREF1078_RS10430 0.62 -0.5
721,316 - HMPREF1078_RS10430 0.62 -0.8
721,316 - HMPREF1078_RS10430 0.62 -1.4
721,316 - HMPREF1078_RS10430 0.62 -0.1
721,319 - HMPREF1078_RS10430 0.62 -0.5
721,319 - HMPREF1078_RS10430 0.62 -1.1
721,324 + HMPREF1078_RS10430 0.63 +0.4
721,355 - HMPREF1078_RS10430 0.65 +0.1
721,355 - HMPREF1078_RS10430 0.65 -0.4
721,355 - HMPREF1078_RS10430 0.65 -1.0
721,740 + -0.4
721,740 + +0.0
721,740 + -1.7
721,740 + +0.6
721,741 - -0.4
721,741 - +0.1
721,741 - +0.3
721,741 - -1.3
721,743 + +0.2
721,744 + +0.9
721,744 + -0.6
721,744 + +1.2
721,745 - -0.1
721,780 + -2.0
721,780 + +0.7
721,781 - -1.1
721,781 - -0.4
721,781 - +1.2
721,795 - -0.3
721,822 + -0.6
721,823 - -1.0
721,823 - +0.4
721,828 + +1.2
721,852 + -1.9
721,852 + +0.4
721,853 - +1.5
721,853 - +0.2
721,856 + -0.3
721,890 + -1.4
721,899 - +0.6
721,938 + +1.2
721,978 - +0.3
722,003 - -1.9
722,180 - HMPREF1078_RS10435 0.11 -1.3
722,279 + -2.2
722,288 + -1.0
722,288 + -0.9
722,288 + -1.7
722,289 - +2.7
722,290 + -0.8
722,291 - -0.6
722,307 + -1.1
722,342 + -1.6
722,365 + -1.5
722,388 + -2.5
722,399 + HMPREF1078_RS10440 0.10 +0.7
722,399 + HMPREF1078_RS10440 0.10 -0.3
722,407 + HMPREF1078_RS10440 0.11 -3.3
722,407 + HMPREF1078_RS10440 0.11 -0.7
722,407 + HMPREF1078_RS10440 0.11 -1.6
722,409 + HMPREF1078_RS10440 0.12 -1.8
722,409 + HMPREF1078_RS10440 0.12 -0.1
722,462 + HMPREF1078_RS10440 0.22 -1.9
722,472 + HMPREF1078_RS10440 0.24 -0.7
722,472 + HMPREF1078_RS10440 0.24 -0.7
722,482 + HMPREF1078_RS10440 0.26 -2.9
722,508 + HMPREF1078_RS10440 0.31 -0.7
722,539 + HMPREF1078_RS10440 0.36 -0.4
722,539 + HMPREF1078_RS10440 0.36 -0.2
722,539 + HMPREF1078_RS10440 0.36 -3.3
722,589 + HMPREF1078_RS10440 0.46 -0.3
722,589 + HMPREF1078_RS10440 0.46 -1.7
722,629 + HMPREF1078_RS10440 0.53 -0.5
722,686 + HMPREF1078_RS10440 0.64 -1.7
722,806 + HMPREF1078_RS10440 0.87 -0.7
722,806 + HMPREF1078_RS10440 0.87 +2.4
722,806 + HMPREF1078_RS10440 0.87 -1.0

Or see this region's nucleotide sequence