Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10385 and HMPREF1078_RS10390 are separated by 41 nucleotides HMPREF1078_RS10390 and HMPREF1078_RS10395 overlap by 4 nucleotides
HMPREF1078_RS10385: HMPREF1078_RS10385 - bifunctional aspartate kinase/homoserine dehydrogenase I, at 709,470 to 711,908
_RS10385
HMPREF1078_RS10390: HMPREF1078_RS10390 - cofactor-independent phosphoglycerate mutase, at 711,950 to 713,152
_RS10390
HMPREF1078_RS10395: HMPREF1078_RS10395 - threonine synthase, at 713,149 to 714,462
_RS10395
Position (kb) 711
712
713
714 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 710.969 kb on - strand, within HMPREF1078_RS10385 at 710.972 kb on + strand, within HMPREF1078_RS10385 at 710.972 kb on + strand, within HMPREF1078_RS10385 at 710.973 kb on - strand, within HMPREF1078_RS10385 at 710.973 kb on - strand, within HMPREF1078_RS10385 at 710.973 kb on - strand, within HMPREF1078_RS10385 at 710.973 kb on - strand, within HMPREF1078_RS10385 at 711.095 kb on + strand, within HMPREF1078_RS10385 at 711.095 kb on + strand, within HMPREF1078_RS10385 at 711.101 kb on + strand, within HMPREF1078_RS10385 at 711.151 kb on - strand, within HMPREF1078_RS10385 at 711.171 kb on - strand, within HMPREF1078_RS10385 at 711.171 kb on - strand, within HMPREF1078_RS10385 at 711.175 kb on + strand, within HMPREF1078_RS10385 at 711.175 kb on + strand, within HMPREF1078_RS10385 at 711.176 kb on - strand, within HMPREF1078_RS10385 at 711.227 kb on + strand, within HMPREF1078_RS10385 at 711.227 kb on + strand, within HMPREF1078_RS10385 at 711.287 kb on - strand, within HMPREF1078_RS10385 at 711.287 kb on - strand, within HMPREF1078_RS10385 at 711.345 kb on - strand, within HMPREF1078_RS10385 at 711.384 kb on + strand, within HMPREF1078_RS10385 at 711.384 kb on + strand, within HMPREF1078_RS10385 at 711.384 kb on + strand, within HMPREF1078_RS10385 at 711.385 kb on - strand, within HMPREF1078_RS10385 at 711.386 kb on + strand, within HMPREF1078_RS10385 at 711.387 kb on - strand, within HMPREF1078_RS10385 at 711.395 kb on + strand, within HMPREF1078_RS10385 at 711.453 kb on + strand, within HMPREF1078_RS10385 at 711.511 kb on + strand, within HMPREF1078_RS10385 at 711.534 kb on + strand, within HMPREF1078_RS10385 at 711.577 kb on + strand, within HMPREF1078_RS10385 at 711.631 kb on + strand, within HMPREF1078_RS10385 at 711.631 kb on + strand, within HMPREF1078_RS10385 at 711.632 kb on - strand, within HMPREF1078_RS10385 at 711.632 kb on - strand, within HMPREF1078_RS10385 at 711.884 kb on + strand at 711.884 kb on + strand at 711.884 kb on + strand at 711.885 kb on - strand at 711.885 kb on - strand at 711.918 kb on - strand at 711.936 kb on - strand at 711.938 kb on + strand at 711.938 kb on + strand at 711.939 kb on - strand at 711.950 kb on - strand at 712.042 kb on + strand at 712.043 kb on + strand at 712.043 kb on + strand at 712.043 kb on + strand at 712.145 kb on + strand, within HMPREF1078_RS10390 at 712.203 kb on - strand, within HMPREF1078_RS10390 at 712.288 kb on + strand, within HMPREF1078_RS10390 at 712.326 kb on + strand, within HMPREF1078_RS10390 at 712.353 kb on + strand, within HMPREF1078_RS10390 at 712.361 kb on + strand, within HMPREF1078_RS10390 at 712.447 kb on - strand, within HMPREF1078_RS10390 at 712.605 kb on + strand, within HMPREF1078_RS10390 at 712.605 kb on + strand, within HMPREF1078_RS10390 at 712.606 kb on - strand, within HMPREF1078_RS10390 at 712.658 kb on + strand, within HMPREF1078_RS10390 at 712.659 kb on - strand, within HMPREF1078_RS10390 at 712.710 kb on + strand, within HMPREF1078_RS10390 at 712.735 kb on - strand, within HMPREF1078_RS10390 at 712.763 kb on + strand, within HMPREF1078_RS10390 at 712.775 kb on + strand, within HMPREF1078_RS10390 at 712.775 kb on + strand, within HMPREF1078_RS10390 at 712.776 kb on - strand, within HMPREF1078_RS10390 at 712.830 kb on - strand, within HMPREF1078_RS10390 at 712.875 kb on + strand, within HMPREF1078_RS10390 at 712.875 kb on + strand, within HMPREF1078_RS10390 at 712.875 kb on + strand, within HMPREF1078_RS10390 at 713.008 kb on + strand, within HMPREF1078_RS10390 at 713.009 kb on - strand, within HMPREF1078_RS10390 at 713.014 kb on + strand, within HMPREF1078_RS10390 at 713.015 kb on - strand, within HMPREF1078_RS10390 at 713.015 kb on - strand, within HMPREF1078_RS10390 at 713.015 kb on - strand, within HMPREF1078_RS10390 at 713.038 kb on + strand at 713.038 kb on + strand at 713.042 kb on + strand at 713.042 kb on + strand at 713.116 kb on - strand at 713.116 kb on - strand at 713.116 kb on - strand at 713.116 kb on - strand at 713.119 kb on - strand at 713.156 kb on - strand at 713.159 kb on - strand at 713.234 kb on + strand at 713.235 kb on - strand at 713.235 kb on - strand at 713.236 kb on + strand at 713.236 kb on + strand at 713.237 kb on - strand at 713.237 kb on - strand at 713.238 kb on + strand at 713.238 kb on + strand at 713.238 kb on + strand at 713.239 kb on - strand at 713.239 kb on - strand at 713.239 kb on - strand at 713.239 kb on - strand at 713.239 kb on - strand at 713.239 kb on - strand at 713.250 kb on + strand at 713.250 kb on + strand at 713.251 kb on - strand at 713.348 kb on + strand, within HMPREF1078_RS10395 at 713.348 kb on + strand, within HMPREF1078_RS10395 at 713.348 kb on + strand, within HMPREF1078_RS10395 at 713.349 kb on - strand, within HMPREF1078_RS10395 at 713.349 kb on - strand, within HMPREF1078_RS10395 at 713.349 kb on - strand, within HMPREF1078_RS10395 at 713.349 kb on - strand, within HMPREF1078_RS10395 at 713.415 kb on - strand, within HMPREF1078_RS10395 at 713.415 kb on - strand, within HMPREF1078_RS10395 at 713.425 kb on - strand, within HMPREF1078_RS10395 at 713.425 kb on - strand, within HMPREF1078_RS10395 at 713.425 kb on - strand, within HMPREF1078_RS10395 at 713.429 kb on - strand, within HMPREF1078_RS10395 at 713.429 kb on - strand, within HMPREF1078_RS10395 at 713.506 kb on + strand, within HMPREF1078_RS10395 at 713.506 kb on + strand, within HMPREF1078_RS10395 at 713.506 kb on + strand, within HMPREF1078_RS10395 at 713.507 kb on - strand, within HMPREF1078_RS10395 at 713.515 kb on - strand, within HMPREF1078_RS10395 at 713.607 kb on + strand, within HMPREF1078_RS10395 at 713.607 kb on + strand, within HMPREF1078_RS10395 at 713.617 kb on + strand, within HMPREF1078_RS10395 at 713.618 kb on - strand, within HMPREF1078_RS10395 at 713.618 kb on - strand, within HMPREF1078_RS10395 at 713.618 kb on - strand, within HMPREF1078_RS10395 at 713.618 kb on - strand, within HMPREF1078_RS10395 at 713.618 kb on - strand, within HMPREF1078_RS10395 at 713.618 kb on - strand, within HMPREF1078_RS10395 at 713.618 kb on - strand, within HMPREF1078_RS10395 at 713.618 kb on - strand, within HMPREF1078_RS10395 at 713.642 kb on + strand, within HMPREF1078_RS10395 at 713.670 kb on + strand, within HMPREF1078_RS10395 at 713.702 kb on + strand, within HMPREF1078_RS10395 at 713.748 kb on + strand, within HMPREF1078_RS10395 at 713.831 kb on - strand, within HMPREF1078_RS10395 at 713.833 kb on + strand, within HMPREF1078_RS10395 at 713.834 kb on - strand, within HMPREF1078_RS10395 at 713.845 kb on + strand, within HMPREF1078_RS10395 at 713.859 kb on + strand, within HMPREF1078_RS10395 at 713.885 kb on + strand, within HMPREF1078_RS10395 at 713.886 kb on - strand, within HMPREF1078_RS10395 at 713.886 kb on - strand, within HMPREF1078_RS10395 at 713.886 kb on - strand, within HMPREF1078_RS10395 at 713.916 kb on + strand, within HMPREF1078_RS10395 at 714.022 kb on + strand, within HMPREF1078_RS10395 at 714.106 kb on + strand, within HMPREF1078_RS10395 at 714.107 kb on - strand, within HMPREF1078_RS10395
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 710,969 - HMPREF1078_RS10385 0.61 -3.7 710,972 + HMPREF1078_RS10385 0.62 -4.2 710,972 + HMPREF1078_RS10385 0.62 -1.3 710,973 - HMPREF1078_RS10385 0.62 -2.3 710,973 - HMPREF1078_RS10385 0.62 -2.9 710,973 - HMPREF1078_RS10385 0.62 -1.4 710,973 - HMPREF1078_RS10385 0.62 -1.7 711,095 + HMPREF1078_RS10385 0.67 -1.7 711,095 + HMPREF1078_RS10385 0.67 -2.4 711,101 + HMPREF1078_RS10385 0.67 -3.8 711,151 - HMPREF1078_RS10385 0.69 -1.6 711,171 - HMPREF1078_RS10385 0.70 -1.8 711,171 - HMPREF1078_RS10385 0.70 -0.1 711,175 + HMPREF1078_RS10385 0.70 -2.7 711,175 + HMPREF1078_RS10385 0.70 -1.9 711,176 - HMPREF1078_RS10385 0.70 -1.4 711,227 + HMPREF1078_RS10385 0.72 -0.4 711,227 + HMPREF1078_RS10385 0.72 -3.0 711,287 - HMPREF1078_RS10385 0.74 -0.3 711,287 - HMPREF1078_RS10385 0.74 -3.2 711,345 - HMPREF1078_RS10385 0.77 -1.9 711,384 + HMPREF1078_RS10385 0.78 -4.2 711,384 + HMPREF1078_RS10385 0.78 -3.5 711,384 + HMPREF1078_RS10385 0.78 -2.5 711,385 - HMPREF1078_RS10385 0.79 -1.3 711,386 + HMPREF1078_RS10385 0.79 -3.3 711,387 - HMPREF1078_RS10385 0.79 -4.4 711,395 + HMPREF1078_RS10385 0.79 -1.0 711,453 + HMPREF1078_RS10385 0.81 -2.9 711,511 + HMPREF1078_RS10385 0.84 +1.2 711,534 + HMPREF1078_RS10385 0.85 -3.4 711,577 + HMPREF1078_RS10385 0.86 -2.5 711,631 + HMPREF1078_RS10385 0.89 -3.0 711,631 + HMPREF1078_RS10385 0.89 +0.2 711,632 - HMPREF1078_RS10385 0.89 -3.1 711,632 - HMPREF1078_RS10385 0.89 -2.0 711,884 + +0.2 711,884 + +0.7 711,884 + +0.0 711,885 - -1.9 711,885 - -3.7 711,918 - -4.0 711,936 - -4.0 711,938 + -2.3 711,938 + +1.1 711,939 - -0.8 711,950 - -1.4 712,042 + -1.4 712,043 + -3.0 712,043 + -1.9 712,043 + -0.8 712,145 + HMPREF1078_RS10390 0.16 -2.1 712,203 - HMPREF1078_RS10390 0.21 -2.0 712,288 + HMPREF1078_RS10390 0.28 -1.3 712,326 + HMPREF1078_RS10390 0.31 -3.3 712,353 + HMPREF1078_RS10390 0.33 +0.3 712,361 + HMPREF1078_RS10390 0.34 -3.1 712,447 - HMPREF1078_RS10390 0.41 -2.0 712,605 + HMPREF1078_RS10390 0.54 -1.4 712,605 + HMPREF1078_RS10390 0.54 -0.7 712,606 - HMPREF1078_RS10390 0.55 -2.4 712,658 + HMPREF1078_RS10390 0.59 -4.2 712,659 - HMPREF1078_RS10390 0.59 -0.9 712,710 + HMPREF1078_RS10390 0.63 -1.5 712,735 - HMPREF1078_RS10390 0.65 -2.5 712,763 + HMPREF1078_RS10390 0.68 -1.5 712,775 + HMPREF1078_RS10390 0.69 -2.8 712,775 + HMPREF1078_RS10390 0.69 -0.9 712,776 - HMPREF1078_RS10390 0.69 -0.1 712,830 - HMPREF1078_RS10390 0.73 -2.7 712,875 + HMPREF1078_RS10390 0.77 -2.2 712,875 + HMPREF1078_RS10390 0.77 -2.8 712,875 + HMPREF1078_RS10390 0.77 -2.3 713,008 + HMPREF1078_RS10390 0.88 -3.3 713,009 - HMPREF1078_RS10390 0.88 -2.7 713,014 + HMPREF1078_RS10390 0.88 -4.0 713,015 - HMPREF1078_RS10390 0.89 -2.6 713,015 - HMPREF1078_RS10390 0.89 +0.4 713,015 - HMPREF1078_RS10390 0.89 +0.6 713,038 + -0.9 713,038 + -0.8 713,042 + -2.7 713,042 + -3.1 713,116 - -1.5 713,116 - -3.8 713,116 - -1.0 713,116 - -2.2 713,119 - -0.7 713,156 - -2.8 713,159 - -1.2 713,234 + -2.0 713,235 - -1.3 713,235 - +0.4 713,236 + -3.3 713,236 + -3.2 713,237 - +1.2 713,237 - +0.5 713,238 + -2.7 713,238 + -0.1 713,238 + -1.5 713,239 - -2.8 713,239 - -2.7 713,239 - -3.2 713,239 - -1.7 713,239 - -1.7 713,239 - -3.4 713,250 + -2.8 713,250 + -3.9 713,251 - -1.1 713,348 + HMPREF1078_RS10395 0.15 -1.3 713,348 + HMPREF1078_RS10395 0.15 -2.1 713,348 + HMPREF1078_RS10395 0.15 -2.2 713,349 - HMPREF1078_RS10395 0.15 -2.1 713,349 - HMPREF1078_RS10395 0.15 -2.2 713,349 - HMPREF1078_RS10395 0.15 -1.6 713,349 - HMPREF1078_RS10395 0.15 -2.9 713,415 - HMPREF1078_RS10395 0.20 -3.1 713,415 - HMPREF1078_RS10395 0.20 -4.3 713,425 - HMPREF1078_RS10395 0.21 -1.0 713,425 - HMPREF1078_RS10395 0.21 -3.3 713,425 - HMPREF1078_RS10395 0.21 -1.8 713,429 - HMPREF1078_RS10395 0.21 -2.0 713,429 - HMPREF1078_RS10395 0.21 -2.5 713,506 + HMPREF1078_RS10395 0.27 -1.6 713,506 + HMPREF1078_RS10395 0.27 -3.5 713,506 + HMPREF1078_RS10395 0.27 +0.1 713,507 - HMPREF1078_RS10395 0.27 -0.6 713,515 - HMPREF1078_RS10395 0.28 -2.4 713,607 + HMPREF1078_RS10395 0.35 -1.5 713,607 + HMPREF1078_RS10395 0.35 -2.0 713,617 + HMPREF1078_RS10395 0.36 -3.5 713,618 - HMPREF1078_RS10395 0.36 +1.7 713,618 - HMPREF1078_RS10395 0.36 -2.9 713,618 - HMPREF1078_RS10395 0.36 -1.1 713,618 - HMPREF1078_RS10395 0.36 -2.2 713,618 - HMPREF1078_RS10395 0.36 +0.2 713,618 - HMPREF1078_RS10395 0.36 -0.1 713,618 - HMPREF1078_RS10395 0.36 -0.7 713,618 - HMPREF1078_RS10395 0.36 -2.7 713,642 + HMPREF1078_RS10395 0.38 -3.9 713,670 + HMPREF1078_RS10395 0.40 -2.8 713,702 + HMPREF1078_RS10395 0.42 -2.9 713,748 + HMPREF1078_RS10395 0.46 +0.3 713,831 - HMPREF1078_RS10395 0.52 -0.1 713,833 + HMPREF1078_RS10395 0.52 -3.2 713,834 - HMPREF1078_RS10395 0.52 -0.5 713,845 + HMPREF1078_RS10395 0.53 -1.7 713,859 + HMPREF1078_RS10395 0.54 -4.3 713,885 + HMPREF1078_RS10395 0.56 -3.3 713,886 - HMPREF1078_RS10395 0.56 -3.6 713,886 - HMPREF1078_RS10395 0.56 -1.0 713,886 - HMPREF1078_RS10395 0.56 -1.9 713,916 + HMPREF1078_RS10395 0.58 -3.0 714,022 + HMPREF1078_RS10395 0.66 -1.1 714,106 + HMPREF1078_RS10395 0.73 -4.3 714,107 - HMPREF1078_RS10395 0.73 -1.4
Or see this region's nucleotide sequence