Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10205 and HMPREF1078_RS10210 are separated by 379 nucleotides HMPREF1078_RS10210 and HMPREF1078_RS10215 are separated by 9 nucleotides
HMPREF1078_RS10205: HMPREF1078_RS10205 - IS3 family transposase, at 667,546 to 668,454
_RS10205
HMPREF1078_RS10210: HMPREF1078_RS10210 - ABC transporter permease, at 668,834 to 670,054
_RS10210
HMPREF1078_RS10215: HMPREF1078_RS10215 - ABC transporter permease, at 670,064 to 671,263
_RS10215
Position (kb) 668
669
670
671 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 668.721 kb on + strand at 668.721 kb on + strand at 668.753 kb on - strand at 668.773 kb on + strand at 668.813 kb on + strand at 668.821 kb on - strand at 668.835 kb on + strand at 668.843 kb on - strand at 668.867 kb on + strand at 668.878 kb on + strand at 668.878 kb on + strand at 668.878 kb on + strand at 668.878 kb on + strand at 668.879 kb on - strand at 668.905 kb on + strand at 668.905 kb on + strand at 668.905 kb on + strand at 668.906 kb on - strand at 668.907 kb on + strand at 668.908 kb on - strand at 668.908 kb on - strand at 668.908 kb on - strand at 668.911 kb on + strand at 668.911 kb on + strand at 668.911 kb on + strand at 668.912 kb on - strand at 668.912 kb on - strand at 668.912 kb on - strand at 668.912 kb on - strand at 668.912 kb on - strand at 668.913 kb on + strand at 668.913 kb on + strand at 668.914 kb on - strand at 668.942 kb on + strand at 668.943 kb on - strand at 668.943 kb on - strand at 668.952 kb on - strand at 668.952 kb on - strand at 668.963 kb on - strand, within HMPREF1078_RS10210 at 668.963 kb on - strand, within HMPREF1078_RS10210 at 668.965 kb on + strand, within HMPREF1078_RS10210 at 668.966 kb on - strand, within HMPREF1078_RS10210 at 668.966 kb on - strand, within HMPREF1078_RS10210 at 668.966 kb on - strand, within HMPREF1078_RS10210 at 669.018 kb on + strand, within HMPREF1078_RS10210 at 669.019 kb on - strand, within HMPREF1078_RS10210 at 669.019 kb on - strand, within HMPREF1078_RS10210 at 669.051 kb on + strand, within HMPREF1078_RS10210 at 669.052 kb on - strand, within HMPREF1078_RS10210 at 669.229 kb on + strand, within HMPREF1078_RS10210 at 669.230 kb on - strand, within HMPREF1078_RS10210 at 669.230 kb on - strand, within HMPREF1078_RS10210 at 669.237 kb on + strand, within HMPREF1078_RS10210 at 669.238 kb on - strand, within HMPREF1078_RS10210 at 669.239 kb on + strand, within HMPREF1078_RS10210 at 669.240 kb on - strand, within HMPREF1078_RS10210 at 669.290 kb on + strand, within HMPREF1078_RS10210 at 669.291 kb on - strand, within HMPREF1078_RS10210 at 669.291 kb on - strand, within HMPREF1078_RS10210 at 669.313 kb on - strand, within HMPREF1078_RS10210 at 669.319 kb on + strand, within HMPREF1078_RS10210 at 669.319 kb on + strand, within HMPREF1078_RS10210 at 669.320 kb on - strand, within HMPREF1078_RS10210 at 669.324 kb on + strand, within HMPREF1078_RS10210 at 669.431 kb on - strand, within HMPREF1078_RS10210 at 669.522 kb on + strand, within HMPREF1078_RS10210 at 669.522 kb on + strand, within HMPREF1078_RS10210 at 669.523 kb on - strand, within HMPREF1078_RS10210 at 669.564 kb on - strand, within HMPREF1078_RS10210 at 669.612 kb on + strand, within HMPREF1078_RS10210 at 669.667 kb on - strand, within HMPREF1078_RS10210 at 669.669 kb on + strand, within HMPREF1078_RS10210 at 669.670 kb on - strand, within HMPREF1078_RS10210 at 669.670 kb on - strand, within HMPREF1078_RS10210 at 669.693 kb on + strand, within HMPREF1078_RS10210 at 669.693 kb on + strand, within HMPREF1078_RS10210 at 669.694 kb on - strand, within HMPREF1078_RS10210 at 669.694 kb on - strand, within HMPREF1078_RS10210 at 669.694 kb on - strand, within HMPREF1078_RS10210 at 669.694 kb on - strand, within HMPREF1078_RS10210 at 669.788 kb on - strand, within HMPREF1078_RS10210 at 669.914 kb on - strand, within HMPREF1078_RS10210 at 669.914 kb on - strand, within HMPREF1078_RS10210 at 669.933 kb on + strand at 669.934 kb on - strand at 669.937 kb on + strand at 669.937 kb on + strand at 669.938 kb on - strand at 669.939 kb on + strand at 669.939 kb on + strand at 669.939 kb on + strand at 669.945 kb on + strand at 669.996 kb on + strand at 669.996 kb on + strand at 669.997 kb on - strand at 670.029 kb on - strand at 670.029 kb on - strand at 670.037 kb on + strand at 670.038 kb on - strand at 670.038 kb on - strand at 670.041 kb on - strand at 670.048 kb on + strand at 670.055 kb on - strand at 670.055 kb on - strand at 670.164 kb on + strand at 670.165 kb on - strand at 670.215 kb on + strand, within HMPREF1078_RS10215 at 670.216 kb on - strand, within HMPREF1078_RS10215 at 670.218 kb on - strand, within HMPREF1078_RS10215 at 670.218 kb on - strand, within HMPREF1078_RS10215 at 670.248 kb on + strand, within HMPREF1078_RS10215 at 670.249 kb on - strand, within HMPREF1078_RS10215 at 670.257 kb on + strand, within HMPREF1078_RS10215 at 670.258 kb on - strand, within HMPREF1078_RS10215 at 670.258 kb on - strand, within HMPREF1078_RS10215 at 670.345 kb on + strand, within HMPREF1078_RS10215 at 670.345 kb on + strand, within HMPREF1078_RS10215 at 670.346 kb on - strand, within HMPREF1078_RS10215 at 670.352 kb on - strand, within HMPREF1078_RS10215 at 670.354 kb on + strand, within HMPREF1078_RS10215 at 670.458 kb on - strand, within HMPREF1078_RS10215 at 670.465 kb on + strand, within HMPREF1078_RS10215 at 670.465 kb on + strand, within HMPREF1078_RS10215 at 670.483 kb on - strand, within HMPREF1078_RS10215 at 670.493 kb on + strand, within HMPREF1078_RS10215 at 670.493 kb on + strand, within HMPREF1078_RS10215 at 670.513 kb on + strand, within HMPREF1078_RS10215 at 670.522 kb on - strand, within HMPREF1078_RS10215 at 670.640 kb on - strand, within HMPREF1078_RS10215 at 670.853 kb on + strand, within HMPREF1078_RS10215 at 670.860 kb on - strand, within HMPREF1078_RS10215 at 670.870 kb on - strand, within HMPREF1078_RS10215 at 670.870 kb on - strand, within HMPREF1078_RS10215 at 670.870 kb on - strand, within HMPREF1078_RS10215 at 670.875 kb on + strand, within HMPREF1078_RS10215 at 670.876 kb on - strand, within HMPREF1078_RS10215 at 670.879 kb on - strand, within HMPREF1078_RS10215 at 670.945 kb on - strand, within HMPREF1078_RS10215 at 670.950 kb on + strand, within HMPREF1078_RS10215 at 670.950 kb on + strand, within HMPREF1078_RS10215 at 670.951 kb on - strand, within HMPREF1078_RS10215 at 670.952 kb on + strand, within HMPREF1078_RS10215 at 670.952 kb on + strand, within HMPREF1078_RS10215 at 670.953 kb on - strand, within HMPREF1078_RS10215 at 670.953 kb on - strand, within HMPREF1078_RS10215 at 671.009 kb on + strand, within HMPREF1078_RS10215
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 668,721 + -0.1 668,721 + -1.1 668,753 - -0.1 668,773 + +0.1 668,813 + -0.7 668,821 - +0.8 668,835 + +0.4 668,843 - +0.5 668,867 + +1.8 668,878 + +0.0 668,878 + -1.1 668,878 + +0.8 668,878 + +1.2 668,879 - +1.4 668,905 + -0.1 668,905 + +0.8 668,905 + -1.8 668,906 - -2.0 668,907 + -0.2 668,908 - +0.8 668,908 - -2.0 668,908 - +0.2 668,911 + +0.2 668,911 + -0.2 668,911 + +0.2 668,912 - +0.3 668,912 - -0.7 668,912 - -0.7 668,912 - -0.5 668,912 - -0.1 668,913 + -2.0 668,913 + -0.5 668,914 - +1.5 668,942 + +0.2 668,943 - -2.7 668,943 - -0.3 668,952 - +0.2 668,952 - -1.9 668,963 - HMPREF1078_RS10210 0.11 -1.7 668,963 - HMPREF1078_RS10210 0.11 +1.8 668,965 + HMPREF1078_RS10210 0.11 +0.6 668,966 - HMPREF1078_RS10210 0.11 +0.6 668,966 - HMPREF1078_RS10210 0.11 -0.6 668,966 - HMPREF1078_RS10210 0.11 -0.2 669,018 + HMPREF1078_RS10210 0.15 +0.3 669,019 - HMPREF1078_RS10210 0.15 +0.4 669,019 - HMPREF1078_RS10210 0.15 -0.5 669,051 + HMPREF1078_RS10210 0.18 -0.2 669,052 - HMPREF1078_RS10210 0.18 -0.7 669,229 + HMPREF1078_RS10210 0.32 -1.0 669,230 - HMPREF1078_RS10210 0.32 +0.9 669,230 - HMPREF1078_RS10210 0.32 -1.1 669,237 + HMPREF1078_RS10210 0.33 +0.1 669,238 - HMPREF1078_RS10210 0.33 -2.0 669,239 + HMPREF1078_RS10210 0.33 +0.7 669,240 - HMPREF1078_RS10210 0.33 -0.4 669,290 + HMPREF1078_RS10210 0.37 +0.2 669,291 - HMPREF1078_RS10210 0.37 -0.3 669,291 - HMPREF1078_RS10210 0.37 +0.2 669,313 - HMPREF1078_RS10210 0.39 -0.5 669,319 + HMPREF1078_RS10210 0.40 -2.0 669,319 + HMPREF1078_RS10210 0.40 +0.5 669,320 - HMPREF1078_RS10210 0.40 -0.2 669,324 + HMPREF1078_RS10210 0.40 -0.0 669,431 - HMPREF1078_RS10210 0.49 -0.8 669,522 + HMPREF1078_RS10210 0.56 +0.7 669,522 + HMPREF1078_RS10210 0.56 -0.2 669,523 - HMPREF1078_RS10210 0.56 +0.2 669,564 - HMPREF1078_RS10210 0.60 -1.8 669,612 + HMPREF1078_RS10210 0.64 -0.2 669,667 - HMPREF1078_RS10210 0.68 +0.3 669,669 + HMPREF1078_RS10210 0.68 +0.4 669,670 - HMPREF1078_RS10210 0.68 -0.7 669,670 - HMPREF1078_RS10210 0.68 -0.6 669,693 + HMPREF1078_RS10210 0.70 -2.2 669,693 + HMPREF1078_RS10210 0.70 -0.2 669,694 - HMPREF1078_RS10210 0.70 -0.2 669,694 - HMPREF1078_RS10210 0.70 +0.3 669,694 - HMPREF1078_RS10210 0.70 -0.2 669,694 - HMPREF1078_RS10210 0.70 -1.0 669,788 - HMPREF1078_RS10210 0.78 -0.1 669,914 - HMPREF1078_RS10210 0.88 -1.1 669,914 - HMPREF1078_RS10210 0.88 -1.8 669,933 + -0.2 669,934 - +0.6 669,937 + -0.6 669,937 + -0.4 669,938 - +0.1 669,939 + -1.9 669,939 + +1.0 669,939 + +0.4 669,945 + -0.3 669,996 + -2.9 669,996 + +0.3 669,997 - +0.2 670,029 - -0.5 670,029 - -0.0 670,037 + -0.6 670,038 - -1.6 670,038 - +0.8 670,041 - +2.0 670,048 + +0.6 670,055 - +0.1 670,055 - -0.3 670,164 + +1.0 670,165 - -0.1 670,215 + HMPREF1078_RS10215 0.13 +0.3 670,216 - HMPREF1078_RS10215 0.13 -2.1 670,218 - HMPREF1078_RS10215 0.13 +0.5 670,218 - HMPREF1078_RS10215 0.13 -0.4 670,248 + HMPREF1078_RS10215 0.15 -0.2 670,249 - HMPREF1078_RS10215 0.15 +1.1 670,257 + HMPREF1078_RS10215 0.16 +0.5 670,258 - HMPREF1078_RS10215 0.16 -1.8 670,258 - HMPREF1078_RS10215 0.16 -0.4 670,345 + HMPREF1078_RS10215 0.23 +0.4 670,345 + HMPREF1078_RS10215 0.23 -1.9 670,346 - HMPREF1078_RS10215 0.23 +0.9 670,352 - HMPREF1078_RS10215 0.24 -1.0 670,354 + HMPREF1078_RS10215 0.24 +0.4 670,458 - HMPREF1078_RS10215 0.33 -0.6 670,465 + HMPREF1078_RS10215 0.33 -0.2 670,465 + HMPREF1078_RS10215 0.33 -0.8 670,483 - HMPREF1078_RS10215 0.35 +0.8 670,493 + HMPREF1078_RS10215 0.36 +0.4 670,493 + HMPREF1078_RS10215 0.36 -0.3 670,513 + HMPREF1078_RS10215 0.37 -1.3 670,522 - HMPREF1078_RS10215 0.38 -0.6 670,640 - HMPREF1078_RS10215 0.48 +1.3 670,853 + HMPREF1078_RS10215 0.66 -1.0 670,860 - HMPREF1078_RS10215 0.66 -1.4 670,870 - HMPREF1078_RS10215 0.67 -0.5 670,870 - HMPREF1078_RS10215 0.67 -1.2 670,870 - HMPREF1078_RS10215 0.67 +1.4 670,875 + HMPREF1078_RS10215 0.68 -1.5 670,876 - HMPREF1078_RS10215 0.68 -0.1 670,879 - HMPREF1078_RS10215 0.68 -0.5 670,945 - HMPREF1078_RS10215 0.73 +1.1 670,950 + HMPREF1078_RS10215 0.74 +0.6 670,950 + HMPREF1078_RS10215 0.74 -0.9 670,951 - HMPREF1078_RS10215 0.74 +1.2 670,952 + HMPREF1078_RS10215 0.74 +0.5 670,952 + HMPREF1078_RS10215 0.74 -1.2 670,953 - HMPREF1078_RS10215 0.74 -1.3 670,953 - HMPREF1078_RS10215 0.74 +0.6 671,009 + HMPREF1078_RS10215 0.79 -0.6
Or see this region's nucleotide sequence