Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09400 and HMPREF1078_RS09405 are separated by 1 nucleotides HMPREF1078_RS09405 and HMPREF1078_RS09410 are separated by 4 nucleotides HMPREF1078_RS09410 and HMPREF1078_RS09415 are separated by 18 nucleotides HMPREF1078_RS09415 and HMPREF1078_RS19605 are separated by 11 nucleotides
HMPREF1078_RS09400: HMPREF1078_RS09400 - PcfJ domain-containing protein, at 463,116 to 464,396
_RS09400
HMPREF1078_RS09405: HMPREF1078_RS09405 - PcfK-like family protein, at 464,398 to 464,808
_RS09405
HMPREF1078_RS09410: HMPREF1078_RS09410 - hypothetical protein, at 464,813 to 465,070
_RS09410
HMPREF1078_RS09415: HMPREF1078_RS09415 - hypothetical protein, at 465,089 to 465,310
_RS09415
HMPREF1078_RS19605: HMPREF1078_RS19605 - hypothetical protein, at 465,322 to 465,540
_RS19605
Position (kb) 465
466 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 464.092 kb on + strand, within HMPREF1078_RS09400 at 464.119 kb on + strand, within HMPREF1078_RS09400 at 464.192 kb on + strand, within HMPREF1078_RS09400 at 464.192 kb on + strand, within HMPREF1078_RS09400 at 464.202 kb on + strand, within HMPREF1078_RS09400 at 464.202 kb on + strand, within HMPREF1078_RS09400 at 464.203 kb on - strand, within HMPREF1078_RS09400 at 464.203 kb on - strand, within HMPREF1078_RS09400 at 464.203 kb on - strand, within HMPREF1078_RS09400 at 464.203 kb on - strand, within HMPREF1078_RS09400 at 464.204 kb on + strand, within HMPREF1078_RS09400 at 464.205 kb on - strand, within HMPREF1078_RS09400 at 464.262 kb on - strand, within HMPREF1078_RS09400 at 464.314 kb on + strand at 464.315 kb on - strand at 464.364 kb on + strand at 464.376 kb on + strand at 464.376 kb on + strand at 464.397 kb on - strand at 464.410 kb on + strand at 464.465 kb on - strand, within HMPREF1078_RS09405 at 464.561 kb on - strand, within HMPREF1078_RS09405 at 464.561 kb on - strand, within HMPREF1078_RS09405 at 464.573 kb on - strand, within HMPREF1078_RS09405 at 464.573 kb on - strand, within HMPREF1078_RS09405 at 464.574 kb on + strand, within HMPREF1078_RS09405 at 464.584 kb on + strand, within HMPREF1078_RS09405 at 464.585 kb on - strand, within HMPREF1078_RS09405 at 464.606 kb on + strand, within HMPREF1078_RS09405 at 464.607 kb on - strand, within HMPREF1078_RS09405 at 464.609 kb on + strand, within HMPREF1078_RS09405 at 464.610 kb on - strand, within HMPREF1078_RS09405 at 464.628 kb on - strand, within HMPREF1078_RS09405 at 464.629 kb on + strand, within HMPREF1078_RS09405 at 464.672 kb on + strand, within HMPREF1078_RS09405 at 464.672 kb on + strand, within HMPREF1078_RS09405 at 464.673 kb on - strand, within HMPREF1078_RS09405 at 464.685 kb on - strand, within HMPREF1078_RS09405 at 464.701 kb on + strand, within HMPREF1078_RS09405 at 464.701 kb on + strand, within HMPREF1078_RS09405 at 464.776 kb on + strand at 464.776 kb on + strand at 464.776 kb on + strand at 464.777 kb on - strand at 464.777 kb on - strand at 464.842 kb on - strand, within HMPREF1078_RS09410 at 464.846 kb on + strand, within HMPREF1078_RS09410 at 464.847 kb on - strand, within HMPREF1078_RS09410 at 464.847 kb on - strand, within HMPREF1078_RS09410 at 464.902 kb on - strand, within HMPREF1078_RS09410 at 464.902 kb on - strand, within HMPREF1078_RS09410 at 464.902 kb on - strand, within HMPREF1078_RS09410 at 464.902 kb on - strand, within HMPREF1078_RS09410 at 464.948 kb on + strand, within HMPREF1078_RS09410 at 464.948 kb on + strand, within HMPREF1078_RS09410 at 464.948 kb on + strand, within HMPREF1078_RS09410 at 465.028 kb on - strand, within HMPREF1078_RS09410 at 465.032 kb on + strand, within HMPREF1078_RS09410 at 465.082 kb on + strand at 465.189 kb on + strand, within HMPREF1078_RS09415 at 465.191 kb on + strand, within HMPREF1078_RS09415 at 465.225 kb on + strand, within HMPREF1078_RS09415 at 465.226 kb on - strand, within HMPREF1078_RS09415 at 465.238 kb on + strand, within HMPREF1078_RS09415 at 465.239 kb on - strand, within HMPREF1078_RS09415 at 465.241 kb on - strand, within HMPREF1078_RS09415 at 465.241 kb on - strand, within HMPREF1078_RS09415 at 465.297 kb on + strand at 465.311 kb on - strand at 465.317 kb on - strand at 465.317 kb on - strand at 465.317 kb on - strand at 465.332 kb on - strand at 465.332 kb on - strand at 465.415 kb on + strand, within HMPREF1078_RS19605 at 465.415 kb on + strand, within HMPREF1078_RS19605 at 465.432 kb on + strand, within HMPREF1078_RS19605 at 465.433 kb on - strand, within HMPREF1078_RS19605 at 465.433 kb on - strand, within HMPREF1078_RS19605 at 465.436 kb on + strand, within HMPREF1078_RS19605 at 465.437 kb on - strand, within HMPREF1078_RS19605 at 465.437 kb on - strand, within HMPREF1078_RS19605 at 465.437 kb on - strand, within HMPREF1078_RS19605 at 465.437 kb on - strand, within HMPREF1078_RS19605 at 465.439 kb on + strand, within HMPREF1078_RS19605 at 465.440 kb on - strand, within HMPREF1078_RS19605 at 465.464 kb on - strand, within HMPREF1078_RS19605 at 465.481 kb on + strand, within HMPREF1078_RS19605 at 465.481 kb on + strand, within HMPREF1078_RS19605 at 465.484 kb on + strand, within HMPREF1078_RS19605 at 465.493 kb on + strand, within HMPREF1078_RS19605 at 465.508 kb on + strand, within HMPREF1078_RS19605 at 465.529 kb on + strand at 465.540 kb on + strand at 465.566 kb on - strand at 465.616 kb on + strand at 465.616 kb on + strand at 465.616 kb on + strand at 465.617 kb on - strand at 465.658 kb on - strand at 465.658 kb on - strand at 465.695 kb on - strand at 465.695 kb on - strand at 465.701 kb on - strand at 465.716 kb on + strand at 465.717 kb on - strand at 465.717 kb on - strand at 465.721 kb on + strand at 465.721 kb on + strand at 465.721 kb on + strand at 465.721 kb on + strand at 465.721 kb on + strand at 465.722 kb on - strand at 465.722 kb on - strand at 465.725 kb on - strand at 465.771 kb on + strand at 465.771 kb on + strand at 465.783 kb on + strand at 465.783 kb on + strand at 465.851 kb on + strand at 465.852 kb on - strand at 465.852 kb on - strand at 465.852 kb on - strand at 465.852 kb on - strand at 465.888 kb on + strand at 465.888 kb on + strand at 465.899 kb on - strand at 465.929 kb on + strand at 465.929 kb on + strand at 465.929 kb on + strand at 465.930 kb on - strand at 465.930 kb on - strand at 465.930 kb on - strand at 465.930 kb on - strand at 466.031 kb on + strand at 466.031 kb on + strand at 466.031 kb on + strand at 466.031 kb on + strand at 466.032 kb on - strand at 466.039 kb on - strand at 466.042 kb on - strand at 466.042 kb on - strand at 466.095 kb on - strand at 466.182 kb on + strand at 466.182 kb on + strand at 466.182 kb on + strand at 466.182 kb on + strand at 466.183 kb on - strand at 466.183 kb on - strand at 466.183 kb on - strand at 466.184 kb on + strand at 466.202 kb on + strand at 466.203 kb on - strand at 466.203 kb on - strand at 466.203 kb on - strand at 466.224 kb on + strand at 466.235 kb on + strand at 466.236 kb on - strand at 466.237 kb on + strand at 466.238 kb on - strand at 466.238 kb on - strand at 466.238 kb on - strand at 466.272 kb on - strand at 466.310 kb on - strand at 466.310 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 464,092 + HMPREF1078_RS09400 0.76 +1.2 464,119 + HMPREF1078_RS09400 0.78 -0.1 464,192 + HMPREF1078_RS09400 0.84 +0.1 464,192 + HMPREF1078_RS09400 0.84 -0.7 464,202 + HMPREF1078_RS09400 0.85 +0.0 464,202 + HMPREF1078_RS09400 0.85 -1.0 464,203 - HMPREF1078_RS09400 0.85 +1.2 464,203 - HMPREF1078_RS09400 0.85 +0.4 464,203 - HMPREF1078_RS09400 0.85 -2.2 464,203 - HMPREF1078_RS09400 0.85 +0.7 464,204 + HMPREF1078_RS09400 0.85 -0.1 464,205 - HMPREF1078_RS09400 0.85 -0.1 464,262 - HMPREF1078_RS09400 0.89 +0.0 464,314 + -1.3 464,315 - +0.4 464,364 + -0.5 464,376 + +0.4 464,376 + -2.4 464,397 - +0.5 464,410 + -1.3 464,465 - HMPREF1078_RS09405 0.16 -2.3 464,561 - HMPREF1078_RS09405 0.40 -0.1 464,561 - HMPREF1078_RS09405 0.40 -0.3 464,573 - HMPREF1078_RS09405 0.43 -0.0 464,573 - HMPREF1078_RS09405 0.43 +1.3 464,574 + HMPREF1078_RS09405 0.43 -1.5 464,584 + HMPREF1078_RS09405 0.45 -2.5 464,585 - HMPREF1078_RS09405 0.45 -1.5 464,606 + HMPREF1078_RS09405 0.51 +1.3 464,607 - HMPREF1078_RS09405 0.51 -0.7 464,609 + HMPREF1078_RS09405 0.51 -0.7 464,610 - HMPREF1078_RS09405 0.52 -1.8 464,628 - HMPREF1078_RS09405 0.56 +0.2 464,629 + HMPREF1078_RS09405 0.56 -1.4 464,672 + HMPREF1078_RS09405 0.67 -1.7 464,672 + HMPREF1078_RS09405 0.67 +0.2 464,673 - HMPREF1078_RS09405 0.67 +0.7 464,685 - HMPREF1078_RS09405 0.70 -0.4 464,701 + HMPREF1078_RS09405 0.74 +0.6 464,701 + HMPREF1078_RS09405 0.74 -1.4 464,776 + +0.7 464,776 + -1.3 464,776 + -3.0 464,777 - +0.7 464,777 - +1.3 464,842 - HMPREF1078_RS09410 0.11 -0.7 464,846 + HMPREF1078_RS09410 0.13 -0.1 464,847 - HMPREF1078_RS09410 0.13 -1.2 464,847 - HMPREF1078_RS09410 0.13 -0.0 464,902 - HMPREF1078_RS09410 0.34 -0.6 464,902 - HMPREF1078_RS09410 0.34 +0.8 464,902 - HMPREF1078_RS09410 0.34 +0.0 464,902 - HMPREF1078_RS09410 0.34 +1.7 464,948 + HMPREF1078_RS09410 0.52 -0.7 464,948 + HMPREF1078_RS09410 0.52 -1.0 464,948 + HMPREF1078_RS09410 0.52 -0.7 465,028 - HMPREF1078_RS09410 0.83 -0.1 465,032 + HMPREF1078_RS09410 0.85 +0.6 465,082 + +0.2 465,189 + HMPREF1078_RS09415 0.45 +1.6 465,191 + HMPREF1078_RS09415 0.46 -1.6 465,225 + HMPREF1078_RS09415 0.61 +0.7 465,226 - HMPREF1078_RS09415 0.62 +1.3 465,238 + HMPREF1078_RS09415 0.67 +0.7 465,239 - HMPREF1078_RS09415 0.68 -1.2 465,241 - HMPREF1078_RS09415 0.68 +1.5 465,241 - HMPREF1078_RS09415 0.68 -1.0 465,297 + +0.7 465,311 - -0.9 465,317 - +0.2 465,317 - -1.4 465,317 - -0.1 465,332 - -2.7 465,332 - +0.3 465,415 + HMPREF1078_RS19605 0.42 +0.7 465,415 + HMPREF1078_RS19605 0.42 +0.8 465,432 + HMPREF1078_RS19605 0.50 +1.5 465,433 - HMPREF1078_RS19605 0.51 -1.0 465,433 - HMPREF1078_RS19605 0.51 +1.0 465,436 + HMPREF1078_RS19605 0.52 -1.0 465,437 - HMPREF1078_RS19605 0.53 +1.7 465,437 - HMPREF1078_RS19605 0.53 -2.1 465,437 - HMPREF1078_RS19605 0.53 -2.1 465,437 - HMPREF1078_RS19605 0.53 -0.1 465,439 + HMPREF1078_RS19605 0.53 -0.8 465,440 - HMPREF1078_RS19605 0.54 +0.4 465,464 - HMPREF1078_RS19605 0.65 -1.3 465,481 + HMPREF1078_RS19605 0.73 -0.6 465,481 + HMPREF1078_RS19605 0.73 -1.4 465,484 + HMPREF1078_RS19605 0.74 -0.6 465,493 + HMPREF1078_RS19605 0.78 -0.7 465,508 + HMPREF1078_RS19605 0.85 -1.4 465,529 + -0.9 465,540 + +1.4 465,566 - -2.3 465,616 + -1.3 465,616 + -0.1 465,616 + -1.8 465,617 - +0.2 465,658 - +0.5 465,658 - +0.1 465,695 - +0.8 465,695 - +0.1 465,701 - -0.9 465,716 + -0.5 465,717 - -1.2 465,717 - -1.5 465,721 + -1.5 465,721 + -1.6 465,721 + +1.0 465,721 + -0.9 465,721 + +0.7 465,722 - +2.4 465,722 - -2.2 465,725 - -1.1 465,771 + +0.9 465,771 + -0.7 465,783 + +0.3 465,783 + -1.4 465,851 + +0.5 465,852 - +1.2 465,852 - -1.3 465,852 - +0.6 465,852 - +1.6 465,888 + -0.3 465,888 + -0.3 465,899 - +0.4 465,929 + +1.6 465,929 + -0.7 465,929 + +1.4 465,930 - +0.0 465,930 - +0.7 465,930 - +0.6 465,930 - +0.2 466,031 + -1.0 466,031 + -0.2 466,031 + -0.5 466,031 + +1.5 466,032 - +0.1 466,039 - -1.2 466,042 - -1.5 466,042 - +0.3 466,095 - +0.8 466,182 + -1.5 466,182 + -0.6 466,182 + +0.6 466,182 + +0.2 466,183 - +1.7 466,183 - +2.2 466,183 - +0.9 466,184 + +1.9 466,202 + -0.4 466,203 - +0.7 466,203 - -0.2 466,203 - -0.9 466,224 + +0.0 466,235 + -0.3 466,236 - -0.3 466,237 + -0.0 466,238 - -0.8 466,238 - +1.7 466,238 - +0.2 466,272 - -1.2 466,310 - +0.7 466,310 - +2.0
Or see this region's nucleotide sequence