Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09065 and HMPREF1078_RS09070 are separated by 2 nucleotides HMPREF1078_RS09070 and HMPREF1078_RS09075 are separated by 7 nucleotides HMPREF1078_RS09075 and HMPREF1078_RS09080 overlap by 4 nucleotides
HMPREF1078_RS09065: HMPREF1078_RS09065 - conjugative transposon protein TraN, at 413,343 to 414,329
_RS09065
HMPREF1078_RS09070: HMPREF1078_RS09070 - conjugal transfer protein TraO, at 414,332 to 414,907
_RS09070
HMPREF1078_RS09075: HMPREF1078_RS09075 - toprim domain-containing protein, at 414,915 to 415,817
_RS09075
HMPREF1078_RS09080: HMPREF1078_RS09080 - DUF3872 domain-containing protein, at 415,814 to 416,317
_RS09080
Position (kb) 414
415 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 413.342 kb on - strand at 413.353 kb on + strand at 413.386 kb on + strand at 413.387 kb on - strand at 413.387 kb on - strand at 413.491 kb on + strand, within HMPREF1078_RS09065 at 413.491 kb on + strand, within HMPREF1078_RS09065 at 413.560 kb on - strand, within HMPREF1078_RS09065 at 413.601 kb on + strand, within HMPREF1078_RS09065 at 413.736 kb on + strand, within HMPREF1078_RS09065 at 413.965 kb on - strand, within HMPREF1078_RS09065 at 413.982 kb on + strand, within HMPREF1078_RS09065 at 414.142 kb on - strand, within HMPREF1078_RS09065 at 414.352 kb on - strand at 414.507 kb on - strand, within HMPREF1078_RS09070 at 414.567 kb on - strand, within HMPREF1078_RS09070 at 414.792 kb on - strand, within HMPREF1078_RS09070 at 415.084 kb on - strand, within HMPREF1078_RS09075 at 415.221 kb on + strand, within HMPREF1078_RS09075 at 415.296 kb on + strand, within HMPREF1078_RS09075 at 415.297 kb on - strand, within HMPREF1078_RS09075 at 415.447 kb on + strand, within HMPREF1078_RS09075 at 415.448 kb on - strand, within HMPREF1078_RS09075 at 415.553 kb on - strand, within HMPREF1078_RS09075 at 415.553 kb on - strand, within HMPREF1078_RS09075 at 415.688 kb on + strand, within HMPREF1078_RS09075 at 415.689 kb on - strand, within HMPREF1078_RS09075 at 415.759 kb on - strand at 415.799 kb on - strand at 415.821 kb on + strand at 415.822 kb on - strand at 415.822 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 413,342 - +1.9 413,353 + +0.2 413,386 + -0.4 413,387 - -1.2 413,387 - -0.7 413,491 + HMPREF1078_RS09065 0.15 +0.5 413,491 + HMPREF1078_RS09065 0.15 -1.6 413,560 - HMPREF1078_RS09065 0.22 +0.1 413,601 + HMPREF1078_RS09065 0.26 -0.1 413,736 + HMPREF1078_RS09065 0.40 +0.8 413,965 - HMPREF1078_RS09065 0.63 +0.2 413,982 + HMPREF1078_RS09065 0.65 -0.3 414,142 - HMPREF1078_RS09065 0.81 -1.7 414,352 - -0.5 414,507 - HMPREF1078_RS09070 0.30 -1.1 414,567 - HMPREF1078_RS09070 0.41 -2.0 414,792 - HMPREF1078_RS09070 0.80 -0.9 415,084 - HMPREF1078_RS09075 0.19 +0.1 415,221 + HMPREF1078_RS09075 0.34 -1.7 415,296 + HMPREF1078_RS09075 0.42 -2.2 415,297 - HMPREF1078_RS09075 0.42 -0.1 415,447 + HMPREF1078_RS09075 0.59 -1.1 415,448 - HMPREF1078_RS09075 0.59 -0.1 415,553 - HMPREF1078_RS09075 0.71 +1.4 415,553 - HMPREF1078_RS09075 0.71 -3.6 415,688 + HMPREF1078_RS09075 0.86 -2.2 415,689 - HMPREF1078_RS09075 0.86 -0.4 415,759 - -1.1 415,799 - +1.0 415,821 + +0.1 415,822 - +0.5 415,822 - -0.7
Or see this region's nucleotide sequence