Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09045 and HMPREF1078_RS09050 are separated by 31 nucleotides HMPREF1078_RS09050 and HMPREF1078_RS09055 are separated by 6 nucleotides HMPREF1078_RS09055 and HMPREF1078_RS09060 overlap by 20 nucleotides
HMPREF1078_RS09045: HMPREF1078_RS09045 - conjugative transposon protein TraJ, at 410,001 to 411,005
_RS09045
HMPREF1078_RS09050: HMPREF1078_RS09050 - conjugative transposon protein TraK, at 411,037 to 411,660
_RS09050
HMPREF1078_RS09055: HMPREF1078_RS09055 - TraL conjugative transposon family protein, at 411,667 to 411,975
_RS09055
HMPREF1078_RS09060: HMPREF1078_RS09060 - conjugative transposon protein TraM, at 411,956 to 413,308
_RS09060
Position (kb) 411
412 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 410.668 kb on + strand, within HMPREF1078_RS09045 at 410.669 kb on - strand, within HMPREF1078_RS09045 at 410.669 kb on - strand, within HMPREF1078_RS09045 at 410.805 kb on + strand, within HMPREF1078_RS09045 at 410.806 kb on - strand, within HMPREF1078_RS09045 at 410.806 kb on - strand, within HMPREF1078_RS09045 at 410.806 kb on - strand, within HMPREF1078_RS09045 at 410.812 kb on + strand, within HMPREF1078_RS09045 at 410.812 kb on + strand, within HMPREF1078_RS09045 at 410.813 kb on - strand, within HMPREF1078_RS09045 at 410.844 kb on - strand, within HMPREF1078_RS09045 at 411.034 kb on + strand at 411.035 kb on - strand at 411.054 kb on + strand at 411.083 kb on + strand at 411.083 kb on + strand at 411.084 kb on - strand at 411.084 kb on - strand at 411.084 kb on - strand at 411.184 kb on + strand, within HMPREF1078_RS09050 at 411.185 kb on - strand, within HMPREF1078_RS09050 at 411.300 kb on - strand, within HMPREF1078_RS09050 at 411.368 kb on - strand, within HMPREF1078_RS09050 at 411.401 kb on - strand, within HMPREF1078_RS09050 at 411.482 kb on - strand, within HMPREF1078_RS09050 at 411.497 kb on - strand, within HMPREF1078_RS09050 at 411.751 kb on + strand, within HMPREF1078_RS09055 at 411.752 kb on - strand, within HMPREF1078_RS09055 at 411.941 kb on + strand, within HMPREF1078_RS09055 at 411.941 kb on + strand, within HMPREF1078_RS09055 at 411.942 kb on - strand, within HMPREF1078_RS09055 at 411.950 kb on - strand at 411.953 kb on + strand at 412.122 kb on + strand, within HMPREF1078_RS09060 at 412.235 kb on + strand, within HMPREF1078_RS09060 at 412.593 kb on - strand, within HMPREF1078_RS09060 at 412.611 kb on - strand, within HMPREF1078_RS09060 at 412.753 kb on + strand, within HMPREF1078_RS09060 at 412.974 kb on + strand, within HMPREF1078_RS09060
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 410,668 + HMPREF1078_RS09045 0.66 +0.6 410,669 - HMPREF1078_RS09045 0.66 -0.1 410,669 - HMPREF1078_RS09045 0.66 -3.3 410,805 + HMPREF1078_RS09045 0.80 -1.5 410,806 - HMPREF1078_RS09045 0.80 -0.2 410,806 - HMPREF1078_RS09045 0.80 -0.1 410,806 - HMPREF1078_RS09045 0.80 -2.0 410,812 + HMPREF1078_RS09045 0.81 -1.5 410,812 + HMPREF1078_RS09045 0.81 +0.7 410,813 - HMPREF1078_RS09045 0.81 -1.6 410,844 - HMPREF1078_RS09045 0.84 -0.6 411,034 + -2.8 411,035 - -1.2 411,054 + -3.0 411,083 + -0.4 411,083 + -0.8 411,084 - -0.5 411,084 - -0.2 411,084 - +0.4 411,184 + HMPREF1078_RS09050 0.24 -0.5 411,185 - HMPREF1078_RS09050 0.24 +0.4 411,300 - HMPREF1078_RS09050 0.42 -2.8 411,368 - HMPREF1078_RS09050 0.53 +0.7 411,401 - HMPREF1078_RS09050 0.58 -1.8 411,482 - HMPREF1078_RS09050 0.71 -1.5 411,497 - HMPREF1078_RS09050 0.74 +0.6 411,751 + HMPREF1078_RS09055 0.27 -0.9 411,752 - HMPREF1078_RS09055 0.28 -1.8 411,941 + HMPREF1078_RS09055 0.89 -1.0 411,941 + HMPREF1078_RS09055 0.89 -2.2 411,942 - HMPREF1078_RS09055 0.89 +1.1 411,950 - -0.3 411,953 + -0.5 412,122 + HMPREF1078_RS09060 0.12 -0.7 412,235 + HMPREF1078_RS09060 0.21 -1.9 412,593 - HMPREF1078_RS09060 0.47 -2.6 412,611 - HMPREF1078_RS09060 0.48 +1.9 412,753 + HMPREF1078_RS09060 0.59 -2.3 412,974 + HMPREF1078_RS09060 0.75 -1.0
Or see this region's nucleotide sequence