Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09015 and HMPREF1078_RS09020 are separated by 201 nucleotides HMPREF1078_RS09020 and HMPREF1078_RS09025 are separated by 10 nucleotides HMPREF1078_RS09025 and HMPREF1078_RS09030 overlap by 4 nucleotides
HMPREF1078_RS09015: HMPREF1078_RS09015 - hypothetical protein, at 404,832 to 405,560
_RS09015
HMPREF1078_RS09020: HMPREF1078_RS09020 - DUF4134 domain-containing protein, at 405,762 to 406,079
_RS09020
HMPREF1078_RS09025: HMPREF1078_RS09025 - DUF4133 domain-containing protein, at 406,090 to 406,422
_RS09025
HMPREF1078_RS09030: HMPREF1078_RS09030 - TraG family conjugative transposon ATPase, at 406,419 to 408,923
_RS09030
Position (kb) 406
407 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 405.455 kb on - strand, within HMPREF1078_RS09015 at 405.553 kb on - strand at 405.557 kb on - strand at 405.557 kb on - strand at 405.762 kb on - strand at 405.920 kb on - strand, within HMPREF1078_RS09020 at 405.922 kb on - strand, within HMPREF1078_RS09020 at 406.077 kb on + strand at 406.080 kb on + strand at 406.081 kb on - strand at 406.081 kb on - strand at 406.089 kb on + strand at 406.090 kb on - strand at 406.156 kb on + strand, within HMPREF1078_RS09025 at 406.157 kb on - strand, within HMPREF1078_RS09025 at 406.214 kb on - strand, within HMPREF1078_RS09025 at 406.214 kb on - strand, within HMPREF1078_RS09025 at 406.239 kb on - strand, within HMPREF1078_RS09025 at 406.239 kb on - strand, within HMPREF1078_RS09025 at 406.239 kb on - strand, within HMPREF1078_RS09025 at 406.278 kb on - strand, within HMPREF1078_RS09025 at 406.428 kb on - strand at 406.428 kb on - strand at 406.428 kb on - strand at 406.545 kb on + strand at 406.545 kb on + strand at 406.618 kb on - strand at 406.752 kb on + strand, within HMPREF1078_RS09030 at 406.826 kb on + strand, within HMPREF1078_RS09030 at 406.826 kb on + strand, within HMPREF1078_RS09030 at 406.827 kb on - strand, within HMPREF1078_RS09030 at 407.213 kb on + strand, within HMPREF1078_RS09030 at 407.213 kb on + strand, within HMPREF1078_RS09030 at 407.213 kb on + strand, within HMPREF1078_RS09030 at 407.214 kb on - strand, within HMPREF1078_RS09030 at 407.218 kb on - strand, within HMPREF1078_RS09030 at 407.218 kb on - strand, within HMPREF1078_RS09030 at 407.226 kb on + strand, within HMPREF1078_RS09030 at 407.226 kb on + strand, within HMPREF1078_RS09030 at 407.227 kb on - strand, within HMPREF1078_RS09030 at 407.227 kb on - strand, within HMPREF1078_RS09030 at 407.282 kb on + strand, within HMPREF1078_RS09030 at 407.296 kb on + strand, within HMPREF1078_RS09030 at 407.347 kb on - strand, within HMPREF1078_RS09030
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 405,455 - HMPREF1078_RS09015 0.85 +1.3 405,553 - -1.9 405,557 - -1.0 405,557 - +0.3 405,762 - -0.5 405,920 - HMPREF1078_RS09020 0.50 -0.1 405,922 - HMPREF1078_RS09020 0.50 -1.0 406,077 + -3.0 406,080 + -2.6 406,081 - -0.7 406,081 - -1.2 406,089 + -2.3 406,090 - -2.3 406,156 + HMPREF1078_RS09025 0.20 -1.7 406,157 - HMPREF1078_RS09025 0.20 -1.0 406,214 - HMPREF1078_RS09025 0.37 -2.2 406,214 - HMPREF1078_RS09025 0.37 +0.7 406,239 - HMPREF1078_RS09025 0.45 -2.3 406,239 - HMPREF1078_RS09025 0.45 -1.5 406,239 - HMPREF1078_RS09025 0.45 -1.1 406,278 - HMPREF1078_RS09025 0.56 -1.7 406,428 - +0.7 406,428 - +0.0 406,428 - -2.3 406,545 + -0.5 406,545 + +0.3 406,618 - +0.8 406,752 + HMPREF1078_RS09030 0.13 -0.5 406,826 + HMPREF1078_RS09030 0.16 +0.7 406,826 + HMPREF1078_RS09030 0.16 -1.2 406,827 - HMPREF1078_RS09030 0.16 -0.4 407,213 + HMPREF1078_RS09030 0.32 +0.8 407,213 + HMPREF1078_RS09030 0.32 +0.4 407,213 + HMPREF1078_RS09030 0.32 -2.6 407,214 - HMPREF1078_RS09030 0.32 +0.6 407,218 - HMPREF1078_RS09030 0.32 -0.2 407,218 - HMPREF1078_RS09030 0.32 +1.4 407,226 + HMPREF1078_RS09030 0.32 -1.8 407,226 + HMPREF1078_RS09030 0.32 -0.3 407,227 - HMPREF1078_RS09030 0.32 +0.1 407,227 - HMPREF1078_RS09030 0.32 +1.0 407,282 + HMPREF1078_RS09030 0.34 +0.4 407,296 + HMPREF1078_RS09030 0.35 +0.8 407,347 - HMPREF1078_RS09030 0.37 -4.1
Or see this region's nucleotide sequence