Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08745 and HMPREF1078_RS19870 are separated by 180 nucleotides HMPREF1078_RS19870 and HMPREF1078_RS18690 overlap by 20 nucleotides HMPREF1078_RS18690 and HMPREF1078_RS08755 are separated by 136 nucleotides HMPREF1078_RS08755 and HMPREF1078_RS08760 are separated by 28 nucleotides HMPREF1078_RS08760 and HMPREF1078_RS08765 are separated by 28 nucleotides HMPREF1078_RS08765 and HMPREF1078_RS19190 are separated by 91 nucleotides
HMPREF1078_RS08745: HMPREF1078_RS08745 - hypothetical protein, at 336,735 to 337,955
_RS08745
HMPREF1078_RS19870: HMPREF1078_RS19870 - hypothetical protein, at 338,136 to 338,371
_RS19870
HMPREF1078_RS18690: HMPREF1078_RS18690 - site-specific integrase, at 338,352 to 338,555
_RS18690
HMPREF1078_RS08755: HMPREF1078_RS08755 - tRNA-Lys, at 338,692 to 338,764
_RS08755
HMPREF1078_RS08760: HMPREF1078_RS08760 - tRNA-Lys, at 338,793 to 338,865
_RS08760
HMPREF1078_RS08765: HMPREF1078_RS08765 - tRNA-Lys, at 338,894 to 338,966
_RS08765
HMPREF1078_RS19190: HMPREF1078_RS19190 - MBL fold metallo-hydrolase, at 339,058 to 339,861
_RS19190
Position (kb) 338
339 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 337.813 kb on + strand, within HMPREF1078_RS08745 at 337.829 kb on + strand, within HMPREF1078_RS08745 at 337.829 kb on + strand, within HMPREF1078_RS08745 at 337.829 kb on + strand, within HMPREF1078_RS08745 at 337.830 kb on - strand, within HMPREF1078_RS08745 at 337.868 kb on - strand at 337.934 kb on - strand at 337.961 kb on + strand at 337.962 kb on - strand at 337.986 kb on + strand at 337.987 kb on - strand at 337.987 kb on - strand at 338.004 kb on - strand at 338.008 kb on - strand at 338.008 kb on - strand at 338.015 kb on - strand at 338.027 kb on - strand at 338.034 kb on - strand at 338.036 kb on + strand at 338.036 kb on + strand at 338.036 kb on + strand at 338.036 kb on + strand at 338.036 kb on + strand at 338.037 kb on - strand at 338.041 kb on - strand at 338.063 kb on + strand at 338.070 kb on - strand at 338.071 kb on + strand at 338.071 kb on + strand at 338.072 kb on - strand at 338.072 kb on - strand at 338.072 kb on - strand at 338.072 kb on - strand at 338.076 kb on + strand at 338.076 kb on + strand at 338.076 kb on + strand at 338.076 kb on + strand at 338.076 kb on + strand at 338.077 kb on - strand at 338.077 kb on - strand at 338.077 kb on - strand at 338.077 kb on - strand at 338.078 kb on + strand at 338.078 kb on + strand at 338.078 kb on + strand at 338.079 kb on - strand at 338.080 kb on + strand at 338.087 kb on - strand at 338.140 kb on - strand at 338.152 kb on + strand at 338.153 kb on - strand at 338.187 kb on - strand, within HMPREF1078_RS19870 at 338.189 kb on - strand, within HMPREF1078_RS19870 at 338.227 kb on - strand, within HMPREF1078_RS19870 at 338.286 kb on + strand, within HMPREF1078_RS19870 at 338.292 kb on + strand, within HMPREF1078_RS19870 at 338.292 kb on + strand, within HMPREF1078_RS19870 at 338.292 kb on + strand, within HMPREF1078_RS19870 at 338.292 kb on + strand, within HMPREF1078_RS19870 at 338.292 kb on + strand, within HMPREF1078_RS19870 at 338.293 kb on - strand, within HMPREF1078_RS19870 at 338.293 kb on - strand, within HMPREF1078_RS19870 at 338.293 kb on - strand, within HMPREF1078_RS19870 at 338.368 kb on + strand at 338.368 kb on + strand at 338.368 kb on + strand at 338.368 kb on + strand at 338.369 kb on - strand at 338.369 kb on - strand at 338.379 kb on + strand, within HMPREF1078_RS18690 at 338.379 kb on + strand, within HMPREF1078_RS18690 at 338.379 kb on + strand, within HMPREF1078_RS18690 at 338.402 kb on + strand, within HMPREF1078_RS18690 at 338.402 kb on + strand, within HMPREF1078_RS18690 at 338.416 kb on - strand, within HMPREF1078_RS18690 at 338.429 kb on + strand, within HMPREF1078_RS18690 at 338.429 kb on + strand, within HMPREF1078_RS18690 at 338.429 kb on + strand, within HMPREF1078_RS18690 at 338.429 kb on + strand, within HMPREF1078_RS18690 at 338.429 kb on + strand, within HMPREF1078_RS18690 at 338.430 kb on - strand, within HMPREF1078_RS18690 at 338.430 kb on - strand, within HMPREF1078_RS18690 at 338.430 kb on - strand, within HMPREF1078_RS18690 at 338.430 kb on - strand, within HMPREF1078_RS18690 at 338.430 kb on - strand, within HMPREF1078_RS18690 at 338.430 kb on - strand, within HMPREF1078_RS18690 at 338.451 kb on + strand, within HMPREF1078_RS18690 at 338.488 kb on - strand, within HMPREF1078_RS18690 at 338.566 kb on + strand at 338.615 kb on + strand at 338.616 kb on - strand at 338.620 kb on - strand at 338.623 kb on + strand at 338.623 kb on + strand at 338.638 kb on + strand at 338.638 kb on + strand at 338.638 kb on + strand at 338.638 kb on + strand at 338.639 kb on - strand at 338.640 kb on + strand at 338.640 kb on + strand at 338.640 kb on + strand at 338.640 kb on + strand at 338.641 kb on - strand at 338.641 kb on - strand at 338.641 kb on - strand at 338.646 kb on - strand at 338.673 kb on + strand at 338.685 kb on + strand at 338.685 kb on + strand at 338.685 kb on + strand at 338.686 kb on - strand at 338.728 kb on + strand, within HMPREF1078_RS08755 at 338.728 kb on + strand, within HMPREF1078_RS08755 at 338.728 kb on + strand, within HMPREF1078_RS08755 at 338.729 kb on - strand, within HMPREF1078_RS08755 at 338.729 kb on - strand, within HMPREF1078_RS08755 at 338.729 kb on - strand, within HMPREF1078_RS08755 at 338.729 kb on - strand, within HMPREF1078_RS08755 at 338.729 kb on - strand, within HMPREF1078_RS08755 at 338.729 kb on - strand, within HMPREF1078_RS08755 at 338.745 kb on - strand, within HMPREF1078_RS08755 at 338.757 kb on - strand at 338.757 kb on - strand at 338.757 kb on - strand at 338.757 kb on - strand at 338.787 kb on - strand at 338.787 kb on - strand at 338.857 kb on + strand, within HMPREF1078_RS08760 at 338.868 kb on + strand at 338.958 kb on + strand, within HMPREF1078_RS08765 at 338.975 kb on + strand at 339.074 kb on - strand at 339.165 kb on + strand, within HMPREF1078_RS19190 at 339.165 kb on + strand, within HMPREF1078_RS19190 at 339.166 kb on - strand, within HMPREF1078_RS19190 at 339.168 kb on - strand, within HMPREF1078_RS19190 at 339.168 kb on - strand, within HMPREF1078_RS19190 at 339.168 kb on - strand, within HMPREF1078_RS19190 at 339.168 kb on - strand, within HMPREF1078_RS19190 at 339.186 kb on + strand, within HMPREF1078_RS19190 at 339.186 kb on + strand, within HMPREF1078_RS19190 at 339.217 kb on - strand, within HMPREF1078_RS19190 at 339.223 kb on + strand, within HMPREF1078_RS19190 at 339.224 kb on - strand, within HMPREF1078_RS19190 at 339.320 kb on + strand, within HMPREF1078_RS19190 at 339.361 kb on + strand, within HMPREF1078_RS19190 at 339.389 kb on + strand, within HMPREF1078_RS19190 at 339.390 kb on - strand, within HMPREF1078_RS19190 at 339.390 kb on - strand, within HMPREF1078_RS19190 at 339.393 kb on + strand, within HMPREF1078_RS19190 at 339.411 kb on + strand, within HMPREF1078_RS19190 at 339.436 kb on - strand, within HMPREF1078_RS19190 at 339.441 kb on + strand, within HMPREF1078_RS19190 at 339.441 kb on + strand, within HMPREF1078_RS19190 at 339.441 kb on + strand, within HMPREF1078_RS19190 at 339.441 kb on + strand, within HMPREF1078_RS19190 at 339.461 kb on + strand, within HMPREF1078_RS19190 at 339.461 kb on + strand, within HMPREF1078_RS19190 at 339.462 kb on - strand, within HMPREF1078_RS19190 at 339.462 kb on - strand, within HMPREF1078_RS19190 at 339.481 kb on - strand, within HMPREF1078_RS19190 at 339.483 kb on + strand, within HMPREF1078_RS19190 at 339.484 kb on - strand, within HMPREF1078_RS19190 at 339.508 kb on - strand, within HMPREF1078_RS19190 at 339.528 kb on + strand, within HMPREF1078_RS19190 at 339.637 kb on - strand, within HMPREF1078_RS19190 at 339.661 kb on + strand, within HMPREF1078_RS19190 at 339.661 kb on + strand, within HMPREF1078_RS19190 at 339.672 kb on + strand, within HMPREF1078_RS19190 at 339.757 kb on - strand, within HMPREF1078_RS19190 at 339.812 kb on + strand at 339.838 kb on + strand at 339.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 337,813 + HMPREF1078_RS08745 0.88 -1.7 337,829 + HMPREF1078_RS08745 0.90 +0.7 337,829 + HMPREF1078_RS08745 0.90 +1.9 337,829 + HMPREF1078_RS08745 0.90 +0.3 337,830 - HMPREF1078_RS08745 0.90 -0.8 337,868 - -1.2 337,934 - -0.2 337,961 + -0.1 337,962 - +0.7 337,986 + +0.4 337,987 - -1.1 337,987 - -0.1 338,004 - -0.8 338,008 - -0.3 338,008 - -0.2 338,015 - +0.5 338,027 - -0.1 338,034 - +1.2 338,036 + -0.2 338,036 + -0.1 338,036 + -0.3 338,036 + -1.8 338,036 + -1.0 338,037 - -1.3 338,041 - -1.7 338,063 + +0.6 338,070 - -0.6 338,071 + +1.2 338,071 + +1.5 338,072 - -2.6 338,072 - +0.1 338,072 - +2.8 338,072 - -1.2 338,076 + -0.2 338,076 + +0.3 338,076 + -0.4 338,076 + +1.2 338,076 + -0.3 338,077 - +0.1 338,077 - -1.4 338,077 - -0.7 338,077 - -0.4 338,078 + +0.3 338,078 + +1.1 338,078 + +0.1 338,079 - -0.0 338,080 + -0.6 338,087 - +0.2 338,140 - +2.0 338,152 + +0.5 338,153 - +0.3 338,187 - HMPREF1078_RS19870 0.22 -0.7 338,189 - HMPREF1078_RS19870 0.22 +0.5 338,227 - HMPREF1078_RS19870 0.39 +0.0 338,286 + HMPREF1078_RS19870 0.64 +0.8 338,292 + HMPREF1078_RS19870 0.66 +0.4 338,292 + HMPREF1078_RS19870 0.66 +0.1 338,292 + HMPREF1078_RS19870 0.66 -1.2 338,292 + HMPREF1078_RS19870 0.66 +0.2 338,292 + HMPREF1078_RS19870 0.66 -0.8 338,293 - HMPREF1078_RS19870 0.67 +0.3 338,293 - HMPREF1078_RS19870 0.67 -1.4 338,293 - HMPREF1078_RS19870 0.67 +1.0 338,368 + +0.2 338,368 + +1.8 338,368 + -0.2 338,368 + +1.0 338,369 - -0.4 338,369 - +0.0 338,379 + HMPREF1078_RS18690 0.13 +0.9 338,379 + HMPREF1078_RS18690 0.13 +0.2 338,379 + HMPREF1078_RS18690 0.13 +0.6 338,402 + HMPREF1078_RS18690 0.25 -2.6 338,402 + HMPREF1078_RS18690 0.25 +0.2 338,416 - HMPREF1078_RS18690 0.31 -1.4 338,429 + HMPREF1078_RS18690 0.38 +0.2 338,429 + HMPREF1078_RS18690 0.38 -0.5 338,429 + HMPREF1078_RS18690 0.38 +0.2 338,429 + HMPREF1078_RS18690 0.38 -0.2 338,429 + HMPREF1078_RS18690 0.38 -2.1 338,430 - HMPREF1078_RS18690 0.38 -2.8 338,430 - HMPREF1078_RS18690 0.38 -1.5 338,430 - HMPREF1078_RS18690 0.38 +0.2 338,430 - HMPREF1078_RS18690 0.38 -0.4 338,430 - HMPREF1078_RS18690 0.38 +0.5 338,430 - HMPREF1078_RS18690 0.38 -1.1 338,451 + HMPREF1078_RS18690 0.49 +0.1 338,488 - HMPREF1078_RS18690 0.67 -0.1 338,566 + -0.4 338,615 + -0.2 338,616 - -0.2 338,620 - -0.5 338,623 + +0.2 338,623 + -1.2 338,638 + +2.5 338,638 + -1.3 338,638 + -1.8 338,638 + -0.9 338,639 - -1.2 338,640 + +1.1 338,640 + -2.3 338,640 + -0.7 338,640 + +0.3 338,641 - -1.3 338,641 - -0.7 338,641 - -0.9 338,646 - +0.4 338,673 + +1.6 338,685 + +1.7 338,685 + -1.2 338,685 + -0.2 338,686 - -0.1 338,728 + HMPREF1078_RS08755 0.49 +1.5 338,728 + HMPREF1078_RS08755 0.49 -1.2 338,728 + HMPREF1078_RS08755 0.49 +1.5 338,729 - HMPREF1078_RS08755 0.51 +0.0 338,729 - HMPREF1078_RS08755 0.51 -0.9 338,729 - HMPREF1078_RS08755 0.51 +0.9 338,729 - HMPREF1078_RS08755 0.51 -0.2 338,729 - HMPREF1078_RS08755 0.51 -0.4 338,729 - HMPREF1078_RS08755 0.51 -0.2 338,745 - HMPREF1078_RS08755 0.73 -2.1 338,757 - -1.1 338,757 - -1.1 338,757 - -3.4 338,757 - -0.8 338,787 - -2.2 338,787 - +0.7 338,857 + HMPREF1078_RS08760 0.88 -2.1 338,868 + +0.2 338,958 + HMPREF1078_RS08765 0.88 -1.4 338,975 + +0.3 339,074 - -0.3 339,165 + HMPREF1078_RS19190 0.13 -0.2 339,165 + HMPREF1078_RS19190 0.13 -1.7 339,166 - HMPREF1078_RS19190 0.13 +0.2 339,168 - HMPREF1078_RS19190 0.14 -2.4 339,168 - HMPREF1078_RS19190 0.14 -0.6 339,168 - HMPREF1078_RS19190 0.14 +0.9 339,168 - HMPREF1078_RS19190 0.14 -1.0 339,186 + HMPREF1078_RS19190 0.16 -0.6 339,186 + HMPREF1078_RS19190 0.16 -1.2 339,217 - HMPREF1078_RS19190 0.20 -0.5 339,223 + HMPREF1078_RS19190 0.21 +0.4 339,224 - HMPREF1078_RS19190 0.21 -1.4 339,320 + HMPREF1078_RS19190 0.33 -1.9 339,361 + HMPREF1078_RS19190 0.38 -0.7 339,389 + HMPREF1078_RS19190 0.41 +0.5 339,390 - HMPREF1078_RS19190 0.41 -1.3 339,390 - HMPREF1078_RS19190 0.41 -0.9 339,393 + HMPREF1078_RS19190 0.42 +0.2 339,411 + HMPREF1078_RS19190 0.44 -1.5 339,436 - HMPREF1078_RS19190 0.47 -0.9 339,441 + HMPREF1078_RS19190 0.48 -0.6 339,441 + HMPREF1078_RS19190 0.48 -1.9 339,441 + HMPREF1078_RS19190 0.48 -1.4 339,441 + HMPREF1078_RS19190 0.48 +1.4 339,461 + HMPREF1078_RS19190 0.50 +0.2 339,461 + HMPREF1078_RS19190 0.50 -2.0 339,462 - HMPREF1078_RS19190 0.50 -1.0 339,462 - HMPREF1078_RS19190 0.50 +1.1 339,481 - HMPREF1078_RS19190 0.53 -0.9 339,483 + HMPREF1078_RS19190 0.53 +0.1 339,484 - HMPREF1078_RS19190 0.53 -1.5 339,508 - HMPREF1078_RS19190 0.56 -0.4 339,528 + HMPREF1078_RS19190 0.58 -1.7 339,637 - HMPREF1078_RS19190 0.72 +0.4 339,661 + HMPREF1078_RS19190 0.75 -1.8 339,661 + HMPREF1078_RS19190 0.75 -3.2 339,672 + HMPREF1078_RS19190 0.76 -2.1 339,757 - HMPREF1078_RS19190 0.87 -0.8 339,812 + +0.4 339,838 + +0.2 339,839 - -0.0
Or see this region's nucleotide sequence