Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS07895

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dextrin from potato starch 2.5 mg/mL (C)
135,774	-		HMPREF1078_RS07890	0.87	-1.3
135,774	-		HMPREF1078_RS07890	0.87	+0.5
135,775	+		HMPREF1078_RS07890	0.87	+0.8
135,775	+		HMPREF1078_RS07890	0.87	-0.9
135,775	+		HMPREF1078_RS07890	0.87	+0.7
135,775	+		HMPREF1078_RS07890	0.87	-0.4
135,776	-		HMPREF1078_RS07890	0.88	+0.7
135,776	-		HMPREF1078_RS07890	0.88	+0.3
135,776	-		HMPREF1078_RS07890	0.88	+1.0
135,778	+		HMPREF1078_RS07890	0.88	-0.3
135,778	+		HMPREF1078_RS07890	0.88	+0.0
135,779	-		HMPREF1078_RS07890	0.88	+0.7
135,798	+		HMPREF1078_RS07890	0.89	-0.6
135,836	+				+1.3
135,903	+				-0.1
135,913	-				+0.4
135,949	+				-1.2
135,949	+				-0.5
135,950	-				-0.1
135,950	-				-2.1
135,954	+				-1.0
135,955	-				-0.3
135,963	+				-0.0
135,963	+				-0.8
135,964	-				-0.7
135,970	-				-0.3
135,970	-				-2.6
135,971	+				-0.1
135,971	+				-0.1
135,971	+				+0.1
135,971	+				+1.0
135,972	-				-1.3
135,972	-				+0.3
135,972	-				-0.6
135,972	-				+1.2
135,972	-				+1.2
135,972	-				+2.6
135,972	-				-0.8
135,977	+				-1.3
135,978	-				-0.3
136,097	+				-0.8
136,097	+				-0.1
136,098	-				-0.3
136,098	-				-0.8
136,114	+				-0.5
136,119	+				-0.3
136,119	+				-1.0
136,120	-				+0.9
136,120	-				+0.4
136,121	+				+0.7
136,121	+				+3.6
136,122	-				-0.6
136,122	-				+1.2
136,123	+				-2.4
136,123	+				-0.0
136,123	+				-0.2
136,123	+				+0.6
136,124	-				-2.1
136,158	-				+0.0
136,163	+				+1.1
136,165	+				-0.7
136,166	-				-2.9
136,198	+				-0.9
136,199	-				+0.8
136,199	-				-0.8
136,208	+				-1.7
136,208	+				-3.3
136,208	+				+0.4
136,209	-				+3.7
136,221	-				-1.6
136,270	+				-0.5
136,271	-				-3.5
136,289	-				-0.9
136,292	-				-0.2
136,330	+				-0.7
136,330	+				-0.1
136,331	-				-1.3
136,331	-				+0.0
136,361	-				+0.3
136,361	-				+1.3
136,381	-				+1.7
136,428	+				-1.8
136,461	+				-1.6
136,461	+				-1.2
136,461	+				-1.5
136,462	-				-1.8
136,462	-				-1.0
136,462	-				-1.7
136,542	+				-0.5
136,542	+				-0.1
136,542	+				+0.1
136,543	-				-1.9
136,576	-		HMPREF1078_RS07895	0.11	+0.4
136,585	+		HMPREF1078_RS07895	0.12	-2.3
136,586	-		HMPREF1078_RS07895	0.12	-1.1
136,591	+		HMPREF1078_RS07895	0.12	+0.1
136,654	+		HMPREF1078_RS07895	0.18	-0.3
136,699	-		HMPREF1078_RS07895	0.22	-0.1
136,699	-		HMPREF1078_RS07895	0.22	-1.2
136,756	+		HMPREF1078_RS07895	0.26	+1.7
136,766	+		HMPREF1078_RS07895	0.27	+0.8
136,789	+		HMPREF1078_RS07895	0.29	-0.8
136,843	-		HMPREF1078_RS07895	0.34	-1.4
136,984	-		HMPREF1078_RS07895	0.46	+0.7
137,038	+		HMPREF1078_RS07895	0.51	-1.3
137,039	-		HMPREF1078_RS07895	0.51	-1.5
137,046	+		HMPREF1078_RS07895	0.51	+0.4
137,046	+		HMPREF1078_RS07895	0.51	-2.1
137,150	+		HMPREF1078_RS07895	0.60	+2.7
137,210	-		HMPREF1078_RS07895	0.66	-0.7
137,343	+		HMPREF1078_RS07895	0.77	-0.1
137,344	-		HMPREF1078_RS07895	0.77	-0.6
137,344	-		HMPREF1078_RS07895	0.77	-1.0
137,411	+		HMPREF1078_RS07895	0.83	+0.4
137,411	+		HMPREF1078_RS07895	0.83	-1.1
137,447	+		HMPREF1078_RS07895	0.86	-0.2
137,447	+		HMPREF1078_RS07895	0.86	-1.6
137,554	+				+2.7
137,589	-				-1.5
137,589	-				-0.9
137,592	-				+1.5
137,602	-				-0.1
137,614	-				-1.3
137,627	+				+0.1
137,627	+				+0.1
137,648	+				+2.4
137,648	+				+0.7
137,648	+				-0.6
137,649	-				-2.0
138,261	-				-0.1
138,319	-				+1.1
138,319	-				+2.2
138,422	+				-1.0
138,437	+				-1.2
138,442	+				+0.0
138,460	+				-2.8
138,484	+				+3.2
138,553	+				+0.5
138,575	+				+0.9