Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07850 and HMPREF1078_RS07855 are separated by 149 nucleotides HMPREF1078_RS07855 and HMPREF1078_RS07860 are separated by 562 nucleotides
HMPREF1078_RS07850: HMPREF1078_RS07850 - AAA family ATPase, at 125,239 to 126,417
_RS07850
HMPREF1078_RS07855: HMPREF1078_RS07855 - branched-chain amino acid aminotransferase, at 126,567 to 127,586
_RS07855
HMPREF1078_RS07860: HMPREF1078_RS07860 - methylenetetrahydrofolate reductase [NAD(P)H], at 128,149 to 129,099
_RS07860
Position (kb) 126
127
128 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 125.589 kb on - strand, within HMPREF1078_RS07850 at 125.597 kb on + strand, within HMPREF1078_RS07850 at 125.597 kb on + strand, within HMPREF1078_RS07850 at 125.598 kb on - strand, within HMPREF1078_RS07850 at 125.598 kb on - strand, within HMPREF1078_RS07850 at 125.598 kb on - strand, within HMPREF1078_RS07850 at 125.627 kb on - strand, within HMPREF1078_RS07850 at 125.627 kb on - strand, within HMPREF1078_RS07850 at 125.659 kb on - strand, within HMPREF1078_RS07850 at 125.685 kb on - strand, within HMPREF1078_RS07850 at 125.732 kb on - strand, within HMPREF1078_RS07850 at 125.732 kb on - strand, within HMPREF1078_RS07850 at 125.732 kb on - strand, within HMPREF1078_RS07850 at 125.736 kb on - strand, within HMPREF1078_RS07850 at 125.736 kb on - strand, within HMPREF1078_RS07850 at 125.747 kb on - strand, within HMPREF1078_RS07850 at 125.760 kb on + strand, within HMPREF1078_RS07850 at 125.761 kb on - strand, within HMPREF1078_RS07850 at 125.835 kb on - strand, within HMPREF1078_RS07850 at 125.835 kb on - strand, within HMPREF1078_RS07850 at 125.847 kb on - strand, within HMPREF1078_RS07850 at 125.906 kb on - strand, within HMPREF1078_RS07850 at 125.920 kb on - strand, within HMPREF1078_RS07850 at 125.920 kb on - strand, within HMPREF1078_RS07850 at 125.922 kb on - strand, within HMPREF1078_RS07850 at 125.988 kb on - strand, within HMPREF1078_RS07850 at 125.988 kb on - strand, within HMPREF1078_RS07850 at 126.084 kb on - strand, within HMPREF1078_RS07850 at 126.189 kb on + strand, within HMPREF1078_RS07850 at 126.189 kb on + strand, within HMPREF1078_RS07850 at 126.190 kb on - strand, within HMPREF1078_RS07850 at 126.190 kb on - strand, within HMPREF1078_RS07850 at 126.190 kb on - strand, within HMPREF1078_RS07850 at 126.190 kb on - strand, within HMPREF1078_RS07850 at 126.221 kb on - strand, within HMPREF1078_RS07850 at 126.221 kb on - strand, within HMPREF1078_RS07850 at 126.221 kb on - strand, within HMPREF1078_RS07850 at 126.221 kb on - strand, within HMPREF1078_RS07850 at 126.224 kb on + strand, within HMPREF1078_RS07850 at 126.238 kb on - strand, within HMPREF1078_RS07850 at 126.238 kb on - strand, within HMPREF1078_RS07850 at 126.238 kb on - strand, within HMPREF1078_RS07850 at 126.371 kb on + strand at 126.372 kb on - strand at 126.389 kb on + strand at 126.389 kb on + strand at 126.389 kb on + strand at 126.390 kb on - strand at 126.390 kb on - strand at 126.390 kb on - strand at 126.393 kb on + strand at 126.393 kb on + strand at 126.394 kb on - strand at 126.435 kb on - strand at 126.450 kb on - strand at 126.475 kb on - strand at 126.477 kb on - strand at 126.481 kb on - strand at 126.564 kb on + strand at 126.565 kb on - strand at 126.890 kb on - strand, within HMPREF1078_RS07855 at 127.047 kb on - strand, within HMPREF1078_RS07855 at 127.076 kb on - strand, within HMPREF1078_RS07855 at 127.089 kb on - strand, within HMPREF1078_RS07855 at 127.158 kb on - strand, within HMPREF1078_RS07855 at 127.448 kb on + strand, within HMPREF1078_RS07855 at 127.448 kb on + strand, within HMPREF1078_RS07855 at 127.601 kb on - strand at 127.702 kb on - strand at 127.702 kb on - strand at 127.726 kb on - strand at 127.730 kb on + strand at 127.769 kb on - strand at 127.780 kb on + strand at 127.792 kb on - strand at 127.802 kb on + strand at 127.802 kb on + strand at 127.802 kb on + strand at 127.803 kb on - strand at 127.852 kb on + strand at 127.852 kb on + strand at 127.853 kb on - strand at 127.853 kb on - strand at 127.853 kb on - strand at 127.862 kb on + strand at 127.863 kb on - strand at 127.863 kb on - strand at 127.896 kb on - strand at 127.905 kb on + strand at 127.905 kb on + strand at 127.905 kb on + strand at 127.906 kb on - strand at 127.906 kb on - strand at 127.929 kb on - strand at 127.981 kb on + strand at 127.982 kb on - strand at 127.988 kb on + strand at 128.074 kb on + strand at 128.087 kb on + strand at 128.087 kb on + strand at 128.088 kb on - strand at 128.088 kb on - strand at 128.104 kb on + strand at 128.119 kb on + strand at 128.120 kb on - strand at 128.120 kb on - strand at 128.137 kb on + strand at 128.145 kb on + strand at 128.157 kb on - strand at 128.172 kb on + strand at 128.184 kb on + strand at 128.232 kb on - strand at 128.232 kb on - strand at 128.232 kb on - strand at 128.240 kb on + strand at 128.240 kb on + strand at 128.241 kb on - strand at 128.242 kb on + strand at 128.244 kb on + strand, within HMPREF1078_RS07860 at 128.244 kb on + strand, within HMPREF1078_RS07860 at 128.244 kb on + strand, within HMPREF1078_RS07860 at 128.244 kb on + strand, within HMPREF1078_RS07860 at 128.245 kb on - strand, within HMPREF1078_RS07860 at 128.245 kb on - strand, within HMPREF1078_RS07860 at 128.245 kb on - strand, within HMPREF1078_RS07860 at 128.245 kb on - strand, within HMPREF1078_RS07860 at 128.252 kb on + strand, within HMPREF1078_RS07860 at 128.281 kb on + strand, within HMPREF1078_RS07860 at 128.281 kb on + strand, within HMPREF1078_RS07860 at 128.281 kb on + strand, within HMPREF1078_RS07860 at 128.282 kb on - strand, within HMPREF1078_RS07860 at 128.289 kb on + strand, within HMPREF1078_RS07860 at 128.289 kb on + strand, within HMPREF1078_RS07860 at 128.289 kb on + strand, within HMPREF1078_RS07860 at 128.289 kb on + strand, within HMPREF1078_RS07860 at 128.289 kb on + strand, within HMPREF1078_RS07860 at 128.290 kb on - strand, within HMPREF1078_RS07860 at 128.290 kb on - strand, within HMPREF1078_RS07860 at 128.291 kb on + strand, within HMPREF1078_RS07860 at 128.291 kb on + strand, within HMPREF1078_RS07860 at 128.292 kb on - strand, within HMPREF1078_RS07860 at 128.312 kb on - strand, within HMPREF1078_RS07860 at 128.313 kb on + strand, within HMPREF1078_RS07860 at 128.314 kb on - strand, within HMPREF1078_RS07860 at 128.314 kb on - strand, within HMPREF1078_RS07860 at 128.314 kb on - strand, within HMPREF1078_RS07860 at 128.314 kb on - strand, within HMPREF1078_RS07860 at 128.317 kb on + strand, within HMPREF1078_RS07860 at 128.318 kb on - strand, within HMPREF1078_RS07860 at 128.337 kb on + strand, within HMPREF1078_RS07860 at 128.337 kb on + strand, within HMPREF1078_RS07860 at 128.337 kb on + strand, within HMPREF1078_RS07860 at 128.337 kb on + strand, within HMPREF1078_RS07860 at 128.403 kb on + strand, within HMPREF1078_RS07860 at 128.407 kb on + strand, within HMPREF1078_RS07860 at 128.430 kb on + strand, within HMPREF1078_RS07860 at 128.431 kb on - strand, within HMPREF1078_RS07860 at 128.433 kb on + strand, within HMPREF1078_RS07860 at 128.433 kb on + strand, within HMPREF1078_RS07860 at 128.434 kb on - strand, within HMPREF1078_RS07860 at 128.434 kb on - strand, within HMPREF1078_RS07860 at 128.434 kb on - strand, within HMPREF1078_RS07860 at 128.434 kb on - strand, within HMPREF1078_RS07860 at 128.436 kb on - strand, within HMPREF1078_RS07860 at 128.436 kb on - strand, within HMPREF1078_RS07860 at 128.436 kb on - strand, within HMPREF1078_RS07860 at 128.436 kb on - strand, within HMPREF1078_RS07860 at 128.436 kb on - strand, within HMPREF1078_RS07860 at 128.436 kb on - strand, within HMPREF1078_RS07860 at 128.436 kb on - strand, within HMPREF1078_RS07860 at 128.449 kb on - strand, within HMPREF1078_RS07860 at 128.467 kb on + strand, within HMPREF1078_RS07860 at 128.468 kb on - strand, within HMPREF1078_RS07860 at 128.468 kb on - strand, within HMPREF1078_RS07860 at 128.468 kb on - strand, within HMPREF1078_RS07860 at 128.501 kb on - strand, within HMPREF1078_RS07860 at 128.528 kb on + strand, within HMPREF1078_RS07860 at 128.528 kb on + strand, within HMPREF1078_RS07860 at 128.561 kb on + strand, within HMPREF1078_RS07860 at 128.561 kb on + strand, within HMPREF1078_RS07860 at 128.561 kb on + strand, within HMPREF1078_RS07860 at 128.562 kb on - strand, within HMPREF1078_RS07860 at 128.562 kb on - strand, within HMPREF1078_RS07860 at 128.562 kb on - strand, within HMPREF1078_RS07860 at 128.562 kb on - strand, within HMPREF1078_RS07860 at 128.562 kb on - strand, within HMPREF1078_RS07860 at 128.562 kb on - strand, within HMPREF1078_RS07860 at 128.562 kb on - strand, within HMPREF1078_RS07860 at 128.563 kb on + strand, within HMPREF1078_RS07860 at 128.563 kb on + strand, within HMPREF1078_RS07860 at 128.564 kb on - strand, within HMPREF1078_RS07860 at 128.564 kb on - strand, within HMPREF1078_RS07860 at 128.564 kb on - strand, within HMPREF1078_RS07860
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 125,589 - HMPREF1078_RS07850 0.30 -1.0 125,597 + HMPREF1078_RS07850 0.30 +0.7 125,597 + HMPREF1078_RS07850 0.30 +0.7 125,598 - HMPREF1078_RS07850 0.30 -2.1 125,598 - HMPREF1078_RS07850 0.30 -2.8 125,598 - HMPREF1078_RS07850 0.30 -1.0 125,627 - HMPREF1078_RS07850 0.33 -1.4 125,627 - HMPREF1078_RS07850 0.33 -2.9 125,659 - HMPREF1078_RS07850 0.36 -3.3 125,685 - HMPREF1078_RS07850 0.38 -2.3 125,732 - HMPREF1078_RS07850 0.42 -0.0 125,732 - HMPREF1078_RS07850 0.42 -0.4 125,732 - HMPREF1078_RS07850 0.42 -3.3 125,736 - HMPREF1078_RS07850 0.42 -1.8 125,736 - HMPREF1078_RS07850 0.42 -0.6 125,747 - HMPREF1078_RS07850 0.43 -2.9 125,760 + HMPREF1078_RS07850 0.44 +0.4 125,761 - HMPREF1078_RS07850 0.44 -0.6 125,835 - HMPREF1078_RS07850 0.51 -2.1 125,835 - HMPREF1078_RS07850 0.51 -0.5 125,847 - HMPREF1078_RS07850 0.52 -2.9 125,906 - HMPREF1078_RS07850 0.57 -2.1 125,920 - HMPREF1078_RS07850 0.58 +1.3 125,920 - HMPREF1078_RS07850 0.58 -1.1 125,922 - HMPREF1078_RS07850 0.58 -2.1 125,988 - HMPREF1078_RS07850 0.64 -1.7 125,988 - HMPREF1078_RS07850 0.64 -1.3 126,084 - HMPREF1078_RS07850 0.72 -3.5 126,189 + HMPREF1078_RS07850 0.81 +2.7 126,189 + HMPREF1078_RS07850 0.81 +0.4 126,190 - HMPREF1078_RS07850 0.81 -3.8 126,190 - HMPREF1078_RS07850 0.81 -2.7 126,190 - HMPREF1078_RS07850 0.81 -0.7 126,190 - HMPREF1078_RS07850 0.81 -2.5 126,221 - HMPREF1078_RS07850 0.83 -2.6 126,221 - HMPREF1078_RS07850 0.83 -1.7 126,221 - HMPREF1078_RS07850 0.83 +1.4 126,221 - HMPREF1078_RS07850 0.83 -0.5 126,224 + HMPREF1078_RS07850 0.84 +1.2 126,238 - HMPREF1078_RS07850 0.85 +0.2 126,238 - HMPREF1078_RS07850 0.85 -2.2 126,238 - HMPREF1078_RS07850 0.85 -2.9 126,371 + -1.0 126,372 - -2.5 126,389 + -0.3 126,389 + +1.7 126,389 + +1.1 126,390 - +0.1 126,390 - -0.2 126,390 - -2.2 126,393 + +0.7 126,393 + -0.3 126,394 - -1.8 126,435 - -1.5 126,450 - +0.8 126,475 - -2.1 126,477 - +0.7 126,481 - -0.1 126,564 + -0.8 126,565 - +0.1 126,890 - HMPREF1078_RS07855 0.32 +0.1 127,047 - HMPREF1078_RS07855 0.47 -0.1 127,076 - HMPREF1078_RS07855 0.50 +1.1 127,089 - HMPREF1078_RS07855 0.51 -1.3 127,158 - HMPREF1078_RS07855 0.58 +1.7 127,448 + HMPREF1078_RS07855 0.86 +0.7 127,448 + HMPREF1078_RS07855 0.86 +1.7 127,601 - -1.4 127,702 - +0.4 127,702 - -0.7 127,726 - +0.2 127,730 + -1.8 127,769 - -0.9 127,780 + -1.5 127,792 - +0.0 127,802 + -0.7 127,802 + -0.2 127,802 + -2.3 127,803 - +0.2 127,852 + -0.4 127,852 + +0.9 127,853 - +1.7 127,853 - -0.4 127,853 - +1.0 127,862 + -1.5 127,863 - -0.8 127,863 - -1.2 127,896 - -0.6 127,905 + +1.9 127,905 + +0.5 127,905 + +0.6 127,906 - -1.8 127,906 - +1.1 127,929 - -0.3 127,981 + +0.6 127,982 - +0.0 127,988 + +0.5 128,074 + +0.3 128,087 + -2.2 128,087 + +1.1 128,088 - +1.0 128,088 - -1.0 128,104 + -0.1 128,119 + -0.1 128,120 - +0.5 128,120 - +0.2 128,137 + -1.0 128,145 + +0.3 128,157 - +0.3 128,172 + +3.3 128,184 + +0.4 128,232 - -0.9 128,232 - +1.0 128,232 - +0.2 128,240 + +0.4 128,240 + +2.1 128,241 - +0.8 128,242 + -0.3 128,244 + HMPREF1078_RS07860 0.10 -0.1 128,244 + HMPREF1078_RS07860 0.10 +0.4 128,244 + HMPREF1078_RS07860 0.10 -2.4 128,244 + HMPREF1078_RS07860 0.10 -0.6 128,245 - HMPREF1078_RS07860 0.10 +1.4 128,245 - HMPREF1078_RS07860 0.10 -0.8 128,245 - HMPREF1078_RS07860 0.10 +0.2 128,245 - HMPREF1078_RS07860 0.10 -1.1 128,252 + HMPREF1078_RS07860 0.11 +0.3 128,281 + HMPREF1078_RS07860 0.14 +1.3 128,281 + HMPREF1078_RS07860 0.14 +2.0 128,281 + HMPREF1078_RS07860 0.14 -1.0 128,282 - HMPREF1078_RS07860 0.14 -0.4 128,289 + HMPREF1078_RS07860 0.15 +1.4 128,289 + HMPREF1078_RS07860 0.15 -0.1 128,289 + HMPREF1078_RS07860 0.15 +0.5 128,289 + HMPREF1078_RS07860 0.15 +1.6 128,289 + HMPREF1078_RS07860 0.15 +0.9 128,290 - HMPREF1078_RS07860 0.15 +0.3 128,290 - HMPREF1078_RS07860 0.15 -1.0 128,291 + HMPREF1078_RS07860 0.15 +1.0 128,291 + HMPREF1078_RS07860 0.15 -0.5 128,292 - HMPREF1078_RS07860 0.15 -0.2 128,312 - HMPREF1078_RS07860 0.17 +1.0 128,313 + HMPREF1078_RS07860 0.17 +0.2 128,314 - HMPREF1078_RS07860 0.17 -2.0 128,314 - HMPREF1078_RS07860 0.17 -2.3 128,314 - HMPREF1078_RS07860 0.17 +0.1 128,314 - HMPREF1078_RS07860 0.17 -1.3 128,317 + HMPREF1078_RS07860 0.18 -2.7 128,318 - HMPREF1078_RS07860 0.18 -0.0 128,337 + HMPREF1078_RS07860 0.20 -0.8 128,337 + HMPREF1078_RS07860 0.20 +1.6 128,337 + HMPREF1078_RS07860 0.20 +0.4 128,337 + HMPREF1078_RS07860 0.20 -0.5 128,403 + HMPREF1078_RS07860 0.27 +1.1 128,407 + HMPREF1078_RS07860 0.27 +1.0 128,430 + HMPREF1078_RS07860 0.30 -0.4 128,431 - HMPREF1078_RS07860 0.30 -0.6 128,433 + HMPREF1078_RS07860 0.30 +0.6 128,433 + HMPREF1078_RS07860 0.30 -0.3 128,434 - HMPREF1078_RS07860 0.30 -2.1 128,434 - HMPREF1078_RS07860 0.30 -0.9 128,434 - HMPREF1078_RS07860 0.30 +0.2 128,434 - HMPREF1078_RS07860 0.30 +0.2 128,436 - HMPREF1078_RS07860 0.30 -1.8 128,436 - HMPREF1078_RS07860 0.30 +0.4 128,436 - HMPREF1078_RS07860 0.30 +0.6 128,436 - HMPREF1078_RS07860 0.30 -0.5 128,436 - HMPREF1078_RS07860 0.30 +0.7 128,436 - HMPREF1078_RS07860 0.30 -1.3 128,436 - HMPREF1078_RS07860 0.30 +0.5 128,449 - HMPREF1078_RS07860 0.32 -1.2 128,467 + HMPREF1078_RS07860 0.33 +1.2 128,468 - HMPREF1078_RS07860 0.34 -2.3 128,468 - HMPREF1078_RS07860 0.34 -0.2 128,468 - HMPREF1078_RS07860 0.34 -3.3 128,501 - HMPREF1078_RS07860 0.37 -0.6 128,528 + HMPREF1078_RS07860 0.40 -0.2 128,528 + HMPREF1078_RS07860 0.40 -1.6 128,561 + HMPREF1078_RS07860 0.43 -0.1 128,561 + HMPREF1078_RS07860 0.43 +0.0 128,561 + HMPREF1078_RS07860 0.43 -0.6 128,562 - HMPREF1078_RS07860 0.43 -0.3 128,562 - HMPREF1078_RS07860 0.43 +1.1 128,562 - HMPREF1078_RS07860 0.43 +0.0 128,562 - HMPREF1078_RS07860 0.43 -1.1 128,562 - HMPREF1078_RS07860 0.43 -0.5 128,562 - HMPREF1078_RS07860 0.43 -1.0 128,562 - HMPREF1078_RS07860 0.43 -0.6 128,563 + HMPREF1078_RS07860 0.44 -0.8 128,563 + HMPREF1078_RS07860 0.44 +0.7 128,564 - HMPREF1078_RS07860 0.44 +1.6 128,564 - HMPREF1078_RS07860 0.44 -1.2 128,564 - HMPREF1078_RS07860 0.44 -0.1
Or see this region's nucleotide sequence