Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07835 and HMPREF1078_RS07840 are separated by 81 nucleotides HMPREF1078_RS07840 and HMPREF1078_RS07845 are separated by 208 nucleotides
HMPREF1078_RS07835: HMPREF1078_RS07835 - DUF4852 domain-containing protein, at 119,667 to 120,707
_RS07835
HMPREF1078_RS07840: HMPREF1078_RS07840 - HD domain-containing protein, at 120,789 to 121,451
_RS07840
HMPREF1078_RS07845: HMPREF1078_RS07845 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 121,660 to 125,208
_RS07845
Position (kb) 120
121
122 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 119.813 kb on + strand, within HMPREF1078_RS07835 at 119.815 kb on + strand, within HMPREF1078_RS07835 at 119.815 kb on + strand, within HMPREF1078_RS07835 at 119.816 kb on - strand, within HMPREF1078_RS07835 at 119.816 kb on - strand, within HMPREF1078_RS07835 at 119.816 kb on - strand, within HMPREF1078_RS07835 at 119.820 kb on - strand, within HMPREF1078_RS07835 at 119.846 kb on + strand, within HMPREF1078_RS07835 at 119.846 kb on + strand, within HMPREF1078_RS07835 at 119.846 kb on + strand, within HMPREF1078_RS07835 at 119.846 kb on + strand, within HMPREF1078_RS07835 at 119.846 kb on + strand, within HMPREF1078_RS07835 at 119.846 kb on + strand, within HMPREF1078_RS07835 at 119.847 kb on - strand, within HMPREF1078_RS07835 at 119.847 kb on - strand, within HMPREF1078_RS07835 at 119.847 kb on - strand, within HMPREF1078_RS07835 at 119.847 kb on - strand, within HMPREF1078_RS07835 at 119.847 kb on - strand, within HMPREF1078_RS07835 at 119.847 kb on - strand, within HMPREF1078_RS07835 at 119.847 kb on - strand, within HMPREF1078_RS07835 at 119.847 kb on - strand, within HMPREF1078_RS07835 at 119.847 kb on - strand, within HMPREF1078_RS07835 at 119.850 kb on + strand, within HMPREF1078_RS07835 at 119.850 kb on + strand, within HMPREF1078_RS07835 at 119.851 kb on - strand, within HMPREF1078_RS07835 at 119.851 kb on - strand, within HMPREF1078_RS07835 at 119.867 kb on - strand, within HMPREF1078_RS07835 at 119.955 kb on - strand, within HMPREF1078_RS07835 at 119.987 kb on + strand, within HMPREF1078_RS07835 at 119.987 kb on + strand, within HMPREF1078_RS07835 at 119.988 kb on - strand, within HMPREF1078_RS07835 at 120.042 kb on - strand, within HMPREF1078_RS07835 at 120.042 kb on - strand, within HMPREF1078_RS07835 at 120.069 kb on - strand, within HMPREF1078_RS07835 at 120.140 kb on - strand, within HMPREF1078_RS07835 at 120.215 kb on + strand, within HMPREF1078_RS07835 at 120.215 kb on + strand, within HMPREF1078_RS07835 at 120.215 kb on + strand, within HMPREF1078_RS07835 at 120.216 kb on - strand, within HMPREF1078_RS07835 at 120.217 kb on + strand, within HMPREF1078_RS07835 at 120.218 kb on - strand, within HMPREF1078_RS07835 at 120.218 kb on - strand, within HMPREF1078_RS07835 at 120.218 kb on - strand, within HMPREF1078_RS07835 at 120.251 kb on + strand, within HMPREF1078_RS07835 at 120.273 kb on - strand, within HMPREF1078_RS07835 at 120.306 kb on + strand, within HMPREF1078_RS07835 at 120.324 kb on - strand, within HMPREF1078_RS07835 at 120.324 kb on - strand, within HMPREF1078_RS07835 at 120.324 kb on - strand, within HMPREF1078_RS07835 at 120.434 kb on + strand, within HMPREF1078_RS07835 at 120.434 kb on + strand, within HMPREF1078_RS07835 at 120.434 kb on + strand, within HMPREF1078_RS07835 at 120.434 kb on + strand, within HMPREF1078_RS07835 at 120.434 kb on + strand, within HMPREF1078_RS07835 at 120.434 kb on + strand, within HMPREF1078_RS07835 at 120.435 kb on - strand, within HMPREF1078_RS07835 at 120.435 kb on - strand, within HMPREF1078_RS07835 at 120.435 kb on - strand, within HMPREF1078_RS07835 at 120.435 kb on - strand, within HMPREF1078_RS07835 at 120.472 kb on - strand, within HMPREF1078_RS07835 at 120.511 kb on + strand, within HMPREF1078_RS07835 at 120.526 kb on + strand, within HMPREF1078_RS07835 at 120.526 kb on + strand, within HMPREF1078_RS07835 at 120.526 kb on + strand, within HMPREF1078_RS07835 at 120.526 kb on + strand, within HMPREF1078_RS07835 at 120.527 kb on - strand, within HMPREF1078_RS07835 at 120.527 kb on - strand, within HMPREF1078_RS07835 at 120.527 kb on - strand, within HMPREF1078_RS07835 at 120.527 kb on - strand, within HMPREF1078_RS07835 at 120.527 kb on - strand, within HMPREF1078_RS07835 at 120.527 kb on - strand, within HMPREF1078_RS07835 at 120.530 kb on + strand, within HMPREF1078_RS07835 at 120.531 kb on - strand, within HMPREF1078_RS07835 at 120.539 kb on - strand, within HMPREF1078_RS07835 at 120.539 kb on - strand, within HMPREF1078_RS07835 at 120.544 kb on + strand, within HMPREF1078_RS07835 at 120.544 kb on + strand, within HMPREF1078_RS07835 at 120.559 kb on + strand, within HMPREF1078_RS07835 at 120.559 kb on + strand, within HMPREF1078_RS07835 at 120.559 kb on + strand, within HMPREF1078_RS07835 at 120.560 kb on - strand, within HMPREF1078_RS07835 at 120.560 kb on - strand, within HMPREF1078_RS07835 at 120.560 kb on - strand, within HMPREF1078_RS07835 at 120.560 kb on - strand, within HMPREF1078_RS07835 at 120.564 kb on - strand, within HMPREF1078_RS07835 at 120.564 kb on - strand, within HMPREF1078_RS07835 at 120.593 kb on + strand, within HMPREF1078_RS07835 at 120.594 kb on - strand, within HMPREF1078_RS07835 at 120.617 kb on + strand at 120.617 kb on + strand at 120.618 kb on - strand at 120.627 kb on - strand at 120.628 kb on + strand at 120.628 kb on + strand at 120.629 kb on - strand at 120.629 kb on - strand at 120.629 kb on - strand at 120.629 kb on - strand at 120.629 kb on - strand at 120.653 kb on - strand at 120.675 kb on + strand at 120.707 kb on + strand at 120.708 kb on - strand at 120.708 kb on - strand at 120.715 kb on - strand at 120.719 kb on + strand at 120.732 kb on - strand at 120.772 kb on - strand at 120.796 kb on - strand at 120.796 kb on - strand at 120.796 kb on - strand at 120.796 kb on - strand at 120.810 kb on + strand at 120.889 kb on + strand, within HMPREF1078_RS07840 at 120.960 kb on + strand, within HMPREF1078_RS07840 at 120.961 kb on - strand, within HMPREF1078_RS07840 at 120.961 kb on - strand, within HMPREF1078_RS07840 at 120.962 kb on + strand, within HMPREF1078_RS07840 at 120.962 kb on + strand, within HMPREF1078_RS07840 at 120.963 kb on - strand, within HMPREF1078_RS07840 at 120.963 kb on - strand, within HMPREF1078_RS07840 at 120.963 kb on - strand, within HMPREF1078_RS07840 at 121.014 kb on - strand, within HMPREF1078_RS07840 at 121.133 kb on + strand, within HMPREF1078_RS07840 at 121.133 kb on + strand, within HMPREF1078_RS07840 at 121.134 kb on - strand, within HMPREF1078_RS07840 at 121.134 kb on - strand, within HMPREF1078_RS07840 at 121.136 kb on + strand, within HMPREF1078_RS07840 at 121.172 kb on + strand, within HMPREF1078_RS07840 at 121.196 kb on + strand, within HMPREF1078_RS07840 at 121.197 kb on - strand, within HMPREF1078_RS07840 at 121.197 kb on - strand, within HMPREF1078_RS07840 at 121.197 kb on - strand, within HMPREF1078_RS07840 at 121.239 kb on + strand, within HMPREF1078_RS07840 at 121.239 kb on + strand, within HMPREF1078_RS07840 at 121.239 kb on + strand, within HMPREF1078_RS07840 at 121.240 kb on - strand, within HMPREF1078_RS07840 at 121.241 kb on + strand, within HMPREF1078_RS07840 at 121.296 kb on + strand, within HMPREF1078_RS07840 at 121.296 kb on + strand, within HMPREF1078_RS07840 at 121.296 kb on + strand, within HMPREF1078_RS07840 at 121.297 kb on - strand, within HMPREF1078_RS07840 at 121.297 kb on - strand, within HMPREF1078_RS07840 at 121.308 kb on + strand, within HMPREF1078_RS07840 at 121.308 kb on + strand, within HMPREF1078_RS07840 at 121.309 kb on - strand, within HMPREF1078_RS07840 at 121.352 kb on + strand, within HMPREF1078_RS07840 at 121.353 kb on - strand, within HMPREF1078_RS07840 at 121.363 kb on + strand, within HMPREF1078_RS07840 at 121.400 kb on + strand at 121.401 kb on - strand at 121.402 kb on + strand at 121.439 kb on - strand at 121.439 kb on - strand at 121.443 kb on + strand at 121.443 kb on + strand at 121.443 kb on + strand at 121.443 kb on + strand at 121.444 kb on - strand at 121.444 kb on - strand at 121.444 kb on - strand at 121.444 kb on - strand at 121.464 kb on - strand at 121.464 kb on - strand at 121.466 kb on + strand at 121.468 kb on + strand at 121.469 kb on - strand at 121.469 kb on - strand at 121.470 kb on + strand at 121.470 kb on + strand at 121.470 kb on + strand at 121.470 kb on + strand at 121.470 kb on + strand at 121.471 kb on - strand at 121.475 kb on + strand at 121.480 kb on - strand at 121.570 kb on + strand at 121.608 kb on + strand at 121.642 kb on + strand at 121.643 kb on - strand at 121.662 kb on - strand at 121.670 kb on - strand at 121.670 kb on - strand at 121.700 kb on + strand at 121.701 kb on - strand at 121.705 kb on - strand at 121.705 kb on - strand at 121.908 kb on - strand at 122.101 kb on - strand, within HMPREF1078_RS07845 at 122.236 kb on - strand, within HMPREF1078_RS07845 at 122.291 kb on + strand, within HMPREF1078_RS07845 at 122.292 kb on - strand, within HMPREF1078_RS07845 at 122.292 kb on - strand, within HMPREF1078_RS07845 at 122.292 kb on - strand, within HMPREF1078_RS07845 at 122.380 kb on - strand, within HMPREF1078_RS07845 at 122.380 kb on - strand, within HMPREF1078_RS07845
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 119,813 + HMPREF1078_RS07835 0.14 +1.5 119,815 + HMPREF1078_RS07835 0.14 +2.0 119,815 + HMPREF1078_RS07835 0.14 +1.7 119,816 - HMPREF1078_RS07835 0.14 +0.3 119,816 - HMPREF1078_RS07835 0.14 +0.4 119,816 - HMPREF1078_RS07835 0.14 -1.1 119,820 - HMPREF1078_RS07835 0.15 +0.5 119,846 + HMPREF1078_RS07835 0.17 -0.2 119,846 + HMPREF1078_RS07835 0.17 -0.8 119,846 + HMPREF1078_RS07835 0.17 +1.4 119,846 + HMPREF1078_RS07835 0.17 -2.8 119,846 + HMPREF1078_RS07835 0.17 -0.3 119,846 + HMPREF1078_RS07835 0.17 -1.6 119,847 - HMPREF1078_RS07835 0.17 -1.3 119,847 - HMPREF1078_RS07835 0.17 +1.5 119,847 - HMPREF1078_RS07835 0.17 +2.9 119,847 - HMPREF1078_RS07835 0.17 -1.1 119,847 - HMPREF1078_RS07835 0.17 +0.2 119,847 - HMPREF1078_RS07835 0.17 -1.2 119,847 - HMPREF1078_RS07835 0.17 -0.8 119,847 - HMPREF1078_RS07835 0.17 -0.3 119,847 - HMPREF1078_RS07835 0.17 +0.4 119,850 + HMPREF1078_RS07835 0.18 +0.8 119,850 + HMPREF1078_RS07835 0.18 -2.9 119,851 - HMPREF1078_RS07835 0.18 +0.8 119,851 - HMPREF1078_RS07835 0.18 +1.8 119,867 - HMPREF1078_RS07835 0.19 -0.5 119,955 - HMPREF1078_RS07835 0.28 -0.5 119,987 + HMPREF1078_RS07835 0.31 -0.2 119,987 + HMPREF1078_RS07835 0.31 +0.2 119,988 - HMPREF1078_RS07835 0.31 +0.3 120,042 - HMPREF1078_RS07835 0.36 +1.3 120,042 - HMPREF1078_RS07835 0.36 +1.1 120,069 - HMPREF1078_RS07835 0.39 -1.5 120,140 - HMPREF1078_RS07835 0.45 -2.4 120,215 + HMPREF1078_RS07835 0.53 +1.3 120,215 + HMPREF1078_RS07835 0.53 -2.3 120,215 + HMPREF1078_RS07835 0.53 -0.8 120,216 - HMPREF1078_RS07835 0.53 -3.5 120,217 + HMPREF1078_RS07835 0.53 +0.5 120,218 - HMPREF1078_RS07835 0.53 -2.6 120,218 - HMPREF1078_RS07835 0.53 -0.2 120,218 - HMPREF1078_RS07835 0.53 -0.8 120,251 + HMPREF1078_RS07835 0.56 +0.6 120,273 - HMPREF1078_RS07835 0.58 +0.4 120,306 + HMPREF1078_RS07835 0.61 -0.4 120,324 - HMPREF1078_RS07835 0.63 -1.1 120,324 - HMPREF1078_RS07835 0.63 -1.1 120,324 - HMPREF1078_RS07835 0.63 -0.1 120,434 + HMPREF1078_RS07835 0.74 -2.7 120,434 + HMPREF1078_RS07835 0.74 +0.3 120,434 + HMPREF1078_RS07835 0.74 +0.1 120,434 + HMPREF1078_RS07835 0.74 -1.8 120,434 + HMPREF1078_RS07835 0.74 +0.4 120,434 + HMPREF1078_RS07835 0.74 -0.2 120,435 - HMPREF1078_RS07835 0.74 +2.3 120,435 - HMPREF1078_RS07835 0.74 +0.6 120,435 - HMPREF1078_RS07835 0.74 +1.2 120,435 - HMPREF1078_RS07835 0.74 -0.8 120,472 - HMPREF1078_RS07835 0.77 +0.7 120,511 + HMPREF1078_RS07835 0.81 +0.5 120,526 + HMPREF1078_RS07835 0.83 -0.9 120,526 + HMPREF1078_RS07835 0.83 -0.1 120,526 + HMPREF1078_RS07835 0.83 +3.9 120,526 + HMPREF1078_RS07835 0.83 -0.2 120,527 - HMPREF1078_RS07835 0.83 -0.1 120,527 - HMPREF1078_RS07835 0.83 +0.6 120,527 - HMPREF1078_RS07835 0.83 -1.9 120,527 - HMPREF1078_RS07835 0.83 -1.2 120,527 - HMPREF1078_RS07835 0.83 -1.2 120,527 - HMPREF1078_RS07835 0.83 +0.4 120,530 + HMPREF1078_RS07835 0.83 -0.7 120,531 - HMPREF1078_RS07835 0.83 +0.2 120,539 - HMPREF1078_RS07835 0.84 -0.2 120,539 - HMPREF1078_RS07835 0.84 -2.4 120,544 + HMPREF1078_RS07835 0.84 +0.5 120,544 + HMPREF1078_RS07835 0.84 -1.5 120,559 + HMPREF1078_RS07835 0.86 -1.7 120,559 + HMPREF1078_RS07835 0.86 +0.3 120,559 + HMPREF1078_RS07835 0.86 +0.3 120,560 - HMPREF1078_RS07835 0.86 +0.3 120,560 - HMPREF1078_RS07835 0.86 -0.2 120,560 - HMPREF1078_RS07835 0.86 +0.8 120,560 - HMPREF1078_RS07835 0.86 +0.4 120,564 - HMPREF1078_RS07835 0.86 +0.2 120,564 - HMPREF1078_RS07835 0.86 -0.9 120,593 + HMPREF1078_RS07835 0.89 +2.4 120,594 - HMPREF1078_RS07835 0.89 -2.2 120,617 + +0.1 120,617 + -0.9 120,618 - -1.1 120,627 - -0.3 120,628 + -0.8 120,628 + -0.7 120,629 - -3.7 120,629 - -1.5 120,629 - -1.3 120,629 - -0.9 120,629 - +0.5 120,653 - -1.6 120,675 + +0.3 120,707 + -0.7 120,708 - -0.3 120,708 - -1.8 120,715 - -1.3 120,719 + +2.4 120,732 - -2.6 120,772 - -0.2 120,796 - +0.1 120,796 - -1.0 120,796 - -0.4 120,796 - +0.5 120,810 + -1.2 120,889 + HMPREF1078_RS07840 0.15 +0.1 120,960 + HMPREF1078_RS07840 0.26 -1.4 120,961 - HMPREF1078_RS07840 0.26 -1.8 120,961 - HMPREF1078_RS07840 0.26 +0.4 120,962 + HMPREF1078_RS07840 0.26 -1.8 120,962 + HMPREF1078_RS07840 0.26 -1.9 120,963 - HMPREF1078_RS07840 0.26 -2.0 120,963 - HMPREF1078_RS07840 0.26 -2.8 120,963 - HMPREF1078_RS07840 0.26 -0.6 121,014 - HMPREF1078_RS07840 0.34 -1.8 121,133 + HMPREF1078_RS07840 0.52 +1.7 121,133 + HMPREF1078_RS07840 0.52 -0.8 121,134 - HMPREF1078_RS07840 0.52 +0.6 121,134 - HMPREF1078_RS07840 0.52 +1.3 121,136 + HMPREF1078_RS07840 0.52 -0.3 121,172 + HMPREF1078_RS07840 0.58 +1.1 121,196 + HMPREF1078_RS07840 0.61 -0.9 121,197 - HMPREF1078_RS07840 0.62 -0.5 121,197 - HMPREF1078_RS07840 0.62 -1.3 121,197 - HMPREF1078_RS07840 0.62 -0.2 121,239 + HMPREF1078_RS07840 0.68 -1.7 121,239 + HMPREF1078_RS07840 0.68 -0.5 121,239 + HMPREF1078_RS07840 0.68 -1.1 121,240 - HMPREF1078_RS07840 0.68 -2.1 121,241 + HMPREF1078_RS07840 0.68 -0.4 121,296 + HMPREF1078_RS07840 0.76 -0.6 121,296 + HMPREF1078_RS07840 0.76 +0.2 121,296 + HMPREF1078_RS07840 0.76 +0.1 121,297 - HMPREF1078_RS07840 0.77 +0.4 121,297 - HMPREF1078_RS07840 0.77 -1.1 121,308 + HMPREF1078_RS07840 0.78 -0.8 121,308 + HMPREF1078_RS07840 0.78 +0.2 121,309 - HMPREF1078_RS07840 0.78 +0.2 121,352 + HMPREF1078_RS07840 0.85 -0.6 121,353 - HMPREF1078_RS07840 0.85 -2.2 121,363 + HMPREF1078_RS07840 0.87 +0.2 121,400 + -0.3 121,401 - -0.8 121,402 + -2.2 121,439 - -0.3 121,439 - -0.1 121,443 + -1.6 121,443 + +1.6 121,443 + +0.1 121,443 + -0.8 121,444 - -1.2 121,444 - -0.2 121,444 - +0.0 121,444 - +0.6 121,464 - -1.0 121,464 - +0.4 121,466 + -0.1 121,468 + +0.4 121,469 - -1.5 121,469 - +0.8 121,470 + -0.5 121,470 + +0.7 121,470 + +1.2 121,470 + -1.3 121,470 + +0.4 121,471 - -0.4 121,475 + +0.9 121,480 - +0.4 121,570 + -0.6 121,608 + -1.3 121,642 + -0.3 121,643 - -0.3 121,662 - -1.0 121,670 - -1.4 121,670 - -0.5 121,700 + -0.6 121,701 - +0.9 121,705 - -0.5 121,705 - +1.1 121,908 - -0.8 122,101 - HMPREF1078_RS07845 0.12 +2.7 122,236 - HMPREF1078_RS07845 0.16 +1.1 122,291 + HMPREF1078_RS07845 0.18 +0.7 122,292 - HMPREF1078_RS07845 0.18 +2.7 122,292 - HMPREF1078_RS07845 0.18 -0.1 122,292 - HMPREF1078_RS07845 0.18 +1.7 122,380 - HMPREF1078_RS07845 0.20 -0.6 122,380 - HMPREF1078_RS07845 0.20 +1.1
Or see this region's nucleotide sequence