Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07750 and HMPREF1078_RS07755 are separated by 26 nucleotides HMPREF1078_RS07755 and HMPREF1078_RS07760 are separated by 66 nucleotides HMPREF1078_RS07760 and HMPREF1078_RS07765 are separated by 97 nucleotides
HMPREF1078_RS07750: HMPREF1078_RS07750 - DNA-directed RNA polymerase subunit omega, at 94,821 to 95,153
_RS07750
HMPREF1078_RS07755: HMPREF1078_RS07755 - outer membrane protein assembly factor BamD, at 95,180 to 95,989
_RS07755
HMPREF1078_RS07760: HMPREF1078_RS07760 - hypothetical protein, at 96,056 to 96,481
_RS07760
HMPREF1078_RS07765: HMPREF1078_RS07765 - phenylacetate--CoA ligase, at 96,579 to 97,880
_RS07765
Position (kb) 96
97 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 95.185 kb on - strand at 95.185 kb on - strand at 95.185 kb on - strand at 95.189 kb on - strand at 95.189 kb on - strand at 95.212 kb on - strand at 95.212 kb on - strand at 95.212 kb on - strand at 95.212 kb on - strand at 95.238 kb on - strand at 95.238 kb on - strand at 95.242 kb on - strand at 95.242 kb on - strand at 95.242 kb on - strand at 95.269 kb on - strand, within HMPREF1078_RS07755 at 95.269 kb on - strand, within HMPREF1078_RS07755 at 95.269 kb on - strand, within HMPREF1078_RS07755 at 95.269 kb on - strand, within HMPREF1078_RS07755 at 95.275 kb on - strand, within HMPREF1078_RS07755 at 95.275 kb on - strand, within HMPREF1078_RS07755 at 95.344 kb on - strand, within HMPREF1078_RS07755 at 95.360 kb on - strand, within HMPREF1078_RS07755 at 96.032 kb on - strand at 96.064 kb on + strand at 96.064 kb on + strand at 96.064 kb on + strand at 96.065 kb on - strand at 96.065 kb on - strand at 96.067 kb on - strand at 96.068 kb on + strand at 96.180 kb on + strand, within HMPREF1078_RS07760 at 96.181 kb on - strand, within HMPREF1078_RS07760 at 96.184 kb on + strand, within HMPREF1078_RS07760 at 96.184 kb on + strand, within HMPREF1078_RS07760 at 96.184 kb on + strand, within HMPREF1078_RS07760 at 96.185 kb on - strand, within HMPREF1078_RS07760 at 96.185 kb on - strand, within HMPREF1078_RS07760 at 96.187 kb on - strand, within HMPREF1078_RS07760 at 96.212 kb on - strand, within HMPREF1078_RS07760 at 96.396 kb on - strand, within HMPREF1078_RS07760 at 96.446 kb on - strand at 96.460 kb on + strand at 96.465 kb on - strand at 96.473 kb on - strand at 96.476 kb on + strand at 96.476 kb on + strand at 96.477 kb on - strand at 96.477 kb on - strand at 96.501 kb on - strand at 96.503 kb on - strand at 96.515 kb on - strand at 96.528 kb on + strand at 96.657 kb on + strand at 96.658 kb on - strand at 96.658 kb on - strand at 96.678 kb on + strand at 96.678 kb on + strand at 96.689 kb on + strand at 96.690 kb on - strand at 96.762 kb on + strand, within HMPREF1078_RS07765 at 96.870 kb on + strand, within HMPREF1078_RS07765 at 96.870 kb on + strand, within HMPREF1078_RS07765 at 96.871 kb on - strand, within HMPREF1078_RS07765 at 96.871 kb on - strand, within HMPREF1078_RS07765 at 96.871 kb on - strand, within HMPREF1078_RS07765 at 96.888 kb on - strand, within HMPREF1078_RS07765 at 96.896 kb on + strand, within HMPREF1078_RS07765 at 96.897 kb on - strand, within HMPREF1078_RS07765 at 96.897 kb on - strand, within HMPREF1078_RS07765 at 96.905 kb on + strand, within HMPREF1078_RS07765 at 96.939 kb on - strand, within HMPREF1078_RS07765 at 96.939 kb on - strand, within HMPREF1078_RS07765 at 96.939 kb on - strand, within HMPREF1078_RS07765 at 96.956 kb on + strand, within HMPREF1078_RS07765 at 96.957 kb on - strand, within HMPREF1078_RS07765 at 96.961 kb on + strand, within HMPREF1078_RS07765 at 97.001 kb on + strand, within HMPREF1078_RS07765 at 97.002 kb on - strand, within HMPREF1078_RS07765 at 97.184 kb on + strand, within HMPREF1078_RS07765 at 97.184 kb on + strand, within HMPREF1078_RS07765 at 97.189 kb on + strand, within HMPREF1078_RS07765 at 97.291 kb on - strand, within HMPREF1078_RS07765 at 97.404 kb on - strand, within HMPREF1078_RS07765 at 97.478 kb on - strand, within HMPREF1078_RS07765
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 95,185 - -1.2 95,185 - +0.0 95,185 - -1.2 95,189 - +0.0 95,189 - +0.2 95,212 - -1.9 95,212 - -0.7 95,212 - -2.7 95,212 - -0.4 95,238 - -1.9 95,238 - -2.1 95,242 - -2.3 95,242 - -3.5 95,242 - -0.6 95,269 - HMPREF1078_RS07755 0.11 -2.7 95,269 - HMPREF1078_RS07755 0.11 -0.1 95,269 - HMPREF1078_RS07755 0.11 -0.5 95,269 - HMPREF1078_RS07755 0.11 -2.8 95,275 - HMPREF1078_RS07755 0.12 -1.0 95,275 - HMPREF1078_RS07755 0.12 -3.1 95,344 - HMPREF1078_RS07755 0.20 -2.4 95,360 - HMPREF1078_RS07755 0.22 +1.1 96,032 - -0.6 96,064 + -1.7 96,064 + +1.1 96,064 + +0.4 96,065 - +0.3 96,065 - +0.3 96,067 - -0.1 96,068 + +1.7 96,180 + HMPREF1078_RS07760 0.29 +1.8 96,181 - HMPREF1078_RS07760 0.29 -0.7 96,184 + HMPREF1078_RS07760 0.30 +0.8 96,184 + HMPREF1078_RS07760 0.30 -0.5 96,184 + HMPREF1078_RS07760 0.30 -0.7 96,185 - HMPREF1078_RS07760 0.30 -0.6 96,185 - HMPREF1078_RS07760 0.30 +0.1 96,187 - HMPREF1078_RS07760 0.31 -2.3 96,212 - HMPREF1078_RS07760 0.37 -1.2 96,396 - HMPREF1078_RS07760 0.80 +0.3 96,446 - +0.0 96,460 + -1.8 96,465 - -1.5 96,473 - +1.2 96,476 + -1.4 96,476 + +0.7 96,477 - +0.9 96,477 - -0.3 96,501 - +0.6 96,503 - -2.1 96,515 - +0.9 96,528 + +2.0 96,657 + -1.6 96,658 - +0.3 96,658 - +2.4 96,678 + +0.7 96,678 + +1.9 96,689 + -1.1 96,690 - +1.0 96,762 + HMPREF1078_RS07765 0.14 +0.6 96,870 + HMPREF1078_RS07765 0.22 -1.8 96,870 + HMPREF1078_RS07765 0.22 -0.1 96,871 - HMPREF1078_RS07765 0.22 +1.0 96,871 - HMPREF1078_RS07765 0.22 -0.1 96,871 - HMPREF1078_RS07765 0.22 +1.0 96,888 - HMPREF1078_RS07765 0.24 -0.4 96,896 + HMPREF1078_RS07765 0.24 +0.5 96,897 - HMPREF1078_RS07765 0.24 -0.5 96,897 - HMPREF1078_RS07765 0.24 -1.5 96,905 + HMPREF1078_RS07765 0.25 -1.4 96,939 - HMPREF1078_RS07765 0.28 +0.7 96,939 - HMPREF1078_RS07765 0.28 +0.2 96,939 - HMPREF1078_RS07765 0.28 -0.2 96,956 + HMPREF1078_RS07765 0.29 -2.9 96,957 - HMPREF1078_RS07765 0.29 +0.5 96,961 + HMPREF1078_RS07765 0.29 -0.2 97,001 + HMPREF1078_RS07765 0.32 +0.0 97,002 - HMPREF1078_RS07765 0.32 +1.5 97,184 + HMPREF1078_RS07765 0.46 +0.4 97,184 + HMPREF1078_RS07765 0.46 -0.8 97,189 + HMPREF1078_RS07765 0.47 -0.8 97,291 - HMPREF1078_RS07765 0.55 +0.4 97,404 - HMPREF1078_RS07765 0.63 +0.5 97,478 - HMPREF1078_RS07765 0.69 -2.5
Or see this region's nucleotide sequence