Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07530 and HMPREF1078_RS07535 are separated by 13 nucleotides HMPREF1078_RS07535 and HMPREF1078_RS07540 are separated by 340 nucleotides
HMPREF1078_RS07530: HMPREF1078_RS07530 - glycyl-radical enzyme activating protein, at 38,207 to 39,112
_RS07530
HMPREF1078_RS07535: HMPREF1078_RS07535 - glycyl radical protein, at 39,126 to 41,564
_RS07535
HMPREF1078_RS07540: HMPREF1078_RS07540 - sigma-54 dependent transcriptional regulator, at 41,905 to 43,269
_RS07540
Position (kb) 39
40
41
42 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 38.209 kb on - strand at 38.247 kb on - strand at 38.247 kb on - strand at 38.318 kb on - strand, within HMPREF1078_RS07530 at 38.318 kb on - strand, within HMPREF1078_RS07530 at 38.321 kb on + strand, within HMPREF1078_RS07530 at 38.321 kb on + strand, within HMPREF1078_RS07530 at 38.322 kb on - strand, within HMPREF1078_RS07530 at 38.322 kb on - strand, within HMPREF1078_RS07530 at 38.597 kb on - strand, within HMPREF1078_RS07530 at 38.682 kb on - strand, within HMPREF1078_RS07530 at 38.868 kb on + strand, within HMPREF1078_RS07530 at 39.088 kb on - strand at 39.127 kb on + strand at 39.348 kb on - strand at 39.566 kb on + strand, within HMPREF1078_RS07535 at 39.566 kb on + strand, within HMPREF1078_RS07535 at 39.567 kb on - strand, within HMPREF1078_RS07535 at 39.575 kb on + strand, within HMPREF1078_RS07535 at 39.576 kb on - strand, within HMPREF1078_RS07535 at 39.576 kb on - strand, within HMPREF1078_RS07535 at 39.624 kb on - strand, within HMPREF1078_RS07535 at 39.656 kb on + strand, within HMPREF1078_RS07535 at 39.656 kb on + strand, within HMPREF1078_RS07535 at 39.657 kb on - strand, within HMPREF1078_RS07535 at 39.657 kb on - strand, within HMPREF1078_RS07535 at 39.668 kb on - strand, within HMPREF1078_RS07535 at 39.792 kb on + strand, within HMPREF1078_RS07535 at 39.793 kb on - strand, within HMPREF1078_RS07535 at 39.794 kb on + strand, within HMPREF1078_RS07535 at 39.831 kb on - strand, within HMPREF1078_RS07535 at 39.842 kb on + strand, within HMPREF1078_RS07535 at 39.854 kb on - strand, within HMPREF1078_RS07535 at 39.854 kb on - strand, within HMPREF1078_RS07535 at 39.854 kb on - strand, within HMPREF1078_RS07535 at 39.861 kb on - strand, within HMPREF1078_RS07535 at 39.861 kb on - strand, within HMPREF1078_RS07535 at 39.861 kb on - strand, within HMPREF1078_RS07535 at 39.864 kb on - strand, within HMPREF1078_RS07535 at 39.883 kb on + strand, within HMPREF1078_RS07535 at 39.883 kb on + strand, within HMPREF1078_RS07535 at 39.960 kb on - strand, within HMPREF1078_RS07535 at 40.032 kb on + strand, within HMPREF1078_RS07535 at 40.033 kb on - strand, within HMPREF1078_RS07535 at 40.033 kb on - strand, within HMPREF1078_RS07535 at 40.085 kb on + strand, within HMPREF1078_RS07535 at 40.086 kb on - strand, within HMPREF1078_RS07535 at 40.165 kb on + strand, within HMPREF1078_RS07535 at 40.166 kb on - strand, within HMPREF1078_RS07535 at 40.197 kb on - strand, within HMPREF1078_RS07535 at 40.265 kb on - strand, within HMPREF1078_RS07535 at 40.359 kb on - strand, within HMPREF1078_RS07535 at 40.479 kb on - strand, within HMPREF1078_RS07535 at 40.489 kb on + strand, within HMPREF1078_RS07535 at 40.493 kb on + strand, within HMPREF1078_RS07535 at 40.598 kb on + strand, within HMPREF1078_RS07535 at 40.695 kb on + strand, within HMPREF1078_RS07535 at 40.712 kb on - strand, within HMPREF1078_RS07535 at 40.712 kb on - strand, within HMPREF1078_RS07535 at 40.778 kb on + strand, within HMPREF1078_RS07535 at 40.965 kb on - strand, within HMPREF1078_RS07535 at 40.991 kb on - strand, within HMPREF1078_RS07535 at 40.995 kb on - strand, within HMPREF1078_RS07535 at 40.996 kb on + strand, within HMPREF1078_RS07535 at 40.997 kb on - strand, within HMPREF1078_RS07535 at 41.019 kb on - strand, within HMPREF1078_RS07535 at 41.069 kb on - strand, within HMPREF1078_RS07535 at 41.091 kb on + strand, within HMPREF1078_RS07535 at 41.105 kb on + strand, within HMPREF1078_RS07535 at 41.106 kb on - strand, within HMPREF1078_RS07535 at 41.155 kb on + strand, within HMPREF1078_RS07535 at 41.185 kb on + strand, within HMPREF1078_RS07535 at 41.315 kb on - strand, within HMPREF1078_RS07535 at 41.331 kb on - strand at 41.556 kb on + strand at 41.558 kb on + strand at 41.564 kb on + strand at 41.564 kb on + strand at 41.564 kb on + strand at 41.564 kb on + strand at 41.564 kb on + strand at 41.565 kb on - strand at 41.565 kb on - strand at 41.568 kb on - strand at 41.569 kb on + strand at 41.569 kb on + strand at 41.570 kb on - strand at 41.571 kb on + strand at 41.633 kb on + strand at 41.665 kb on + strand at 41.665 kb on + strand at 41.666 kb on - strand at 41.666 kb on - strand at 41.669 kb on - strand at 41.669 kb on - strand at 41.751 kb on - strand at 41.751 kb on - strand at 41.790 kb on - strand at 41.814 kb on + strand at 41.814 kb on + strand at 41.872 kb on - strand at 41.931 kb on + strand at 41.931 kb on + strand at 41.931 kb on + strand at 41.932 kb on - strand at 41.983 kb on - strand at 42.111 kb on + strand, within HMPREF1078_RS07540 at 42.114 kb on - strand, within HMPREF1078_RS07540 at 42.114 kb on - strand, within HMPREF1078_RS07540 at 42.135 kb on + strand, within HMPREF1078_RS07540 at 42.136 kb on - strand, within HMPREF1078_RS07540 at 42.136 kb on - strand, within HMPREF1078_RS07540 at 42.140 kb on + strand, within HMPREF1078_RS07540 at 42.140 kb on + strand, within HMPREF1078_RS07540 at 42.140 kb on + strand, within HMPREF1078_RS07540 at 42.141 kb on - strand, within HMPREF1078_RS07540 at 42.141 kb on - strand, within HMPREF1078_RS07540 at 42.186 kb on - strand, within HMPREF1078_RS07540 at 42.225 kb on + strand, within HMPREF1078_RS07540 at 42.228 kb on + strand, within HMPREF1078_RS07540 at 42.228 kb on + strand, within HMPREF1078_RS07540 at 42.228 kb on + strand, within HMPREF1078_RS07540 at 42.229 kb on - strand, within HMPREF1078_RS07540 at 42.346 kb on + strand, within HMPREF1078_RS07540 at 42.346 kb on + strand, within HMPREF1078_RS07540 at 42.347 kb on - strand, within HMPREF1078_RS07540 at 42.409 kb on - strand, within HMPREF1078_RS07540 at 42.442 kb on - strand, within HMPREF1078_RS07540 at 42.487 kb on + strand, within HMPREF1078_RS07540 at 42.487 kb on + strand, within HMPREF1078_RS07540 at 42.488 kb on - strand, within HMPREF1078_RS07540 at 42.494 kb on - strand, within HMPREF1078_RS07540 at 42.494 kb on - strand, within HMPREF1078_RS07540 at 42.494 kb on - strand, within HMPREF1078_RS07540 at 42.501 kb on - strand, within HMPREF1078_RS07540 at 42.535 kb on - strand, within HMPREF1078_RS07540 at 42.535 kb on - strand, within HMPREF1078_RS07540
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 38,209 - -1.3 38,247 - +0.2 38,247 - -0.8 38,318 - HMPREF1078_RS07530 0.12 -1.1 38,318 - HMPREF1078_RS07530 0.12 -0.9 38,321 + HMPREF1078_RS07530 0.13 +0.1 38,321 + HMPREF1078_RS07530 0.13 -0.1 38,322 - HMPREF1078_RS07530 0.13 +0.5 38,322 - HMPREF1078_RS07530 0.13 -0.6 38,597 - HMPREF1078_RS07530 0.43 -0.3 38,682 - HMPREF1078_RS07530 0.52 +2.3 38,868 + HMPREF1078_RS07530 0.73 +1.5 39,088 - -2.1 39,127 + -2.3 39,348 - +0.2 39,566 + HMPREF1078_RS07535 0.18 -2.7 39,566 + HMPREF1078_RS07535 0.18 -0.6 39,567 - HMPREF1078_RS07535 0.18 -0.3 39,575 + HMPREF1078_RS07535 0.18 +0.2 39,576 - HMPREF1078_RS07535 0.18 +0.8 39,576 - HMPREF1078_RS07535 0.18 -0.2 39,624 - HMPREF1078_RS07535 0.20 +0.2 39,656 + HMPREF1078_RS07535 0.22 -0.6 39,656 + HMPREF1078_RS07535 0.22 -0.5 39,657 - HMPREF1078_RS07535 0.22 +1.8 39,657 - HMPREF1078_RS07535 0.22 +1.0 39,668 - HMPREF1078_RS07535 0.22 -1.9 39,792 + HMPREF1078_RS07535 0.27 -0.1 39,793 - HMPREF1078_RS07535 0.27 +0.6 39,794 + HMPREF1078_RS07535 0.27 +0.8 39,831 - HMPREF1078_RS07535 0.29 +0.7 39,842 + HMPREF1078_RS07535 0.29 -0.4 39,854 - HMPREF1078_RS07535 0.30 -0.8 39,854 - HMPREF1078_RS07535 0.30 +0.6 39,854 - HMPREF1078_RS07535 0.30 -1.3 39,861 - HMPREF1078_RS07535 0.30 +0.2 39,861 - HMPREF1078_RS07535 0.30 -0.2 39,861 - HMPREF1078_RS07535 0.30 -0.1 39,864 - HMPREF1078_RS07535 0.30 -2.5 39,883 + HMPREF1078_RS07535 0.31 -1.4 39,883 + HMPREF1078_RS07535 0.31 -2.5 39,960 - HMPREF1078_RS07535 0.34 +0.4 40,032 + HMPREF1078_RS07535 0.37 +0.7 40,033 - HMPREF1078_RS07535 0.37 +2.1 40,033 - HMPREF1078_RS07535 0.37 -1.4 40,085 + HMPREF1078_RS07535 0.39 -0.6 40,086 - HMPREF1078_RS07535 0.39 -0.9 40,165 + HMPREF1078_RS07535 0.43 -0.6 40,166 - HMPREF1078_RS07535 0.43 +0.7 40,197 - HMPREF1078_RS07535 0.44 -0.1 40,265 - HMPREF1078_RS07535 0.47 +0.5 40,359 - HMPREF1078_RS07535 0.51 +2.0 40,479 - HMPREF1078_RS07535 0.55 +1.1 40,489 + HMPREF1078_RS07535 0.56 -0.9 40,493 + HMPREF1078_RS07535 0.56 -0.1 40,598 + HMPREF1078_RS07535 0.60 -0.6 40,695 + HMPREF1078_RS07535 0.64 -1.9 40,712 - HMPREF1078_RS07535 0.65 +0.7 40,712 - HMPREF1078_RS07535 0.65 +3.0 40,778 + HMPREF1078_RS07535 0.68 +1.0 40,965 - HMPREF1078_RS07535 0.75 -0.4 40,991 - HMPREF1078_RS07535 0.76 +0.2 40,995 - HMPREF1078_RS07535 0.77 -1.9 40,996 + HMPREF1078_RS07535 0.77 +2.7 40,997 - HMPREF1078_RS07535 0.77 +0.1 41,019 - HMPREF1078_RS07535 0.78 +1.7 41,069 - HMPREF1078_RS07535 0.80 +1.1 41,091 + HMPREF1078_RS07535 0.81 +2.9 41,105 + HMPREF1078_RS07535 0.81 +2.1 41,106 - HMPREF1078_RS07535 0.81 +0.0 41,155 + HMPREF1078_RS07535 0.83 +0.0 41,185 + HMPREF1078_RS07535 0.84 +1.0 41,315 - HMPREF1078_RS07535 0.90 +0.4 41,331 - -2.1 41,556 + -0.3 41,558 + +1.0 41,564 + -0.4 41,564 + -0.1 41,564 + +1.5 41,564 + +0.1 41,564 + -0.2 41,565 - -1.6 41,565 - +0.6 41,568 - -1.5 41,569 + -0.8 41,569 + -1.7 41,570 - +0.0 41,571 + -0.8 41,633 + -1.1 41,665 + +0.9 41,665 + +0.5 41,666 - -0.8 41,666 - +0.7 41,669 - -0.6 41,669 - +0.3 41,751 - -2.2 41,751 - -0.6 41,790 - +0.2 41,814 + -0.8 41,814 + +2.0 41,872 - -0.2 41,931 + -1.1 41,931 + +0.2 41,931 + -2.7 41,932 - -0.9 41,983 - -1.9 42,111 + HMPREF1078_RS07540 0.15 -0.4 42,114 - HMPREF1078_RS07540 0.15 +0.9 42,114 - HMPREF1078_RS07540 0.15 -1.6 42,135 + HMPREF1078_RS07540 0.17 -1.0 42,136 - HMPREF1078_RS07540 0.17 -0.8 42,136 - HMPREF1078_RS07540 0.17 -0.0 42,140 + HMPREF1078_RS07540 0.17 -1.1 42,140 + HMPREF1078_RS07540 0.17 -0.3 42,140 + HMPREF1078_RS07540 0.17 +0.1 42,141 - HMPREF1078_RS07540 0.17 +2.4 42,141 - HMPREF1078_RS07540 0.17 +0.2 42,186 - HMPREF1078_RS07540 0.21 -0.9 42,225 + HMPREF1078_RS07540 0.23 +0.8 42,228 + HMPREF1078_RS07540 0.24 -2.6 42,228 + HMPREF1078_RS07540 0.24 +0.6 42,228 + HMPREF1078_RS07540 0.24 +1.6 42,229 - HMPREF1078_RS07540 0.24 -1.2 42,346 + HMPREF1078_RS07540 0.32 -0.6 42,346 + HMPREF1078_RS07540 0.32 +0.1 42,347 - HMPREF1078_RS07540 0.32 -0.1 42,409 - HMPREF1078_RS07540 0.37 -0.1 42,442 - HMPREF1078_RS07540 0.39 +0.3 42,487 + HMPREF1078_RS07540 0.43 -0.2 42,487 + HMPREF1078_RS07540 0.43 -0.8 42,488 - HMPREF1078_RS07540 0.43 -0.5 42,494 - HMPREF1078_RS07540 0.43 -2.9 42,494 - HMPREF1078_RS07540 0.43 -2.7 42,494 - HMPREF1078_RS07540 0.43 +0.3 42,501 - HMPREF1078_RS07540 0.44 -2.4 42,535 - HMPREF1078_RS07540 0.46 -2.4 42,535 - HMPREF1078_RS07540 0.46 -1.0
Or see this region's nucleotide sequence