Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07445 and HMPREF1078_RS07450 are separated by 164 nucleotides HMPREF1078_RS07450 and HMPREF1078_RS07455 are separated by 0 nucleotides HMPREF1078_RS07455 and HMPREF1078_RS07460 are separated by 131 nucleotides
HMPREF1078_RS07445: HMPREF1078_RS07445 - precorrin-4 C(11)-methyltransferase, at 15,574 to 17,511
_RS07445
HMPREF1078_RS07450: HMPREF1078_RS07450 - cobalt-precorrin-5B (C(1))-methyltransferase CbiD, at 17,676 to 19,520
_RS07450
HMPREF1078_RS07455: HMPREF1078_RS07455 - hypothetical protein, at 19,521 to 20,195
_RS07455
HMPREF1078_RS07460: HMPREF1078_RS07460 - ABC transporter ATP-binding protein, at 20,327 to 21,334
_RS07460
Position (kb) 17
18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 16.721 kb on + strand, within HMPREF1078_RS07445 at 16.738 kb on - strand, within HMPREF1078_RS07445 at 16.892 kb on + strand, within HMPREF1078_RS07445 at 16.959 kb on + strand, within HMPREF1078_RS07445 at 16.960 kb on - strand, within HMPREF1078_RS07445 at 16.972 kb on + strand, within HMPREF1078_RS07445 at 16.994 kb on + strand, within HMPREF1078_RS07445 at 17.023 kb on + strand, within HMPREF1078_RS07445 at 17.024 kb on - strand, within HMPREF1078_RS07445 at 17.140 kb on - strand, within HMPREF1078_RS07445 at 17.218 kb on - strand, within HMPREF1078_RS07445 at 17.465 kb on + strand at 17.528 kb on - strand at 17.531 kb on + strand at 17.532 kb on - strand at 17.532 kb on - strand at 17.543 kb on + strand at 17.543 kb on + strand at 17.543 kb on + strand at 17.544 kb on - strand at 17.544 kb on - strand at 17.544 kb on - strand at 17.551 kb on - strand at 17.573 kb on + strand at 17.574 kb on - strand at 17.578 kb on - strand at 17.596 kb on + strand at 17.638 kb on + strand at 17.638 kb on + strand at 17.639 kb on - strand at 17.640 kb on + strand at 17.640 kb on + strand at 17.676 kb on - strand at 17.680 kb on + strand at 17.681 kb on - strand at 17.719 kb on + strand at 17.816 kb on + strand at 17.967 kb on + strand, within HMPREF1078_RS07450 at 17.993 kb on - strand, within HMPREF1078_RS07450 at 18.052 kb on + strand, within HMPREF1078_RS07450 at 18.052 kb on + strand, within HMPREF1078_RS07450 at 18.328 kb on - strand, within HMPREF1078_RS07450 at 18.334 kb on + strand, within HMPREF1078_RS07450 at 18.392 kb on + strand, within HMPREF1078_RS07450 at 18.519 kb on - strand, within HMPREF1078_RS07450 at 18.595 kb on + strand, within HMPREF1078_RS07450 at 18.608 kb on - strand, within HMPREF1078_RS07450 at 18.724 kb on + strand, within HMPREF1078_RS07450 at 18.725 kb on - strand, within HMPREF1078_RS07450 at 18.800 kb on + strand, within HMPREF1078_RS07450 at 18.850 kb on + strand, within HMPREF1078_RS07450 at 18.851 kb on - strand, within HMPREF1078_RS07450 at 18.895 kb on + strand, within HMPREF1078_RS07450 at 18.967 kb on + strand, within HMPREF1078_RS07450 at 18.968 kb on - strand, within HMPREF1078_RS07450 at 19.033 kb on + strand, within HMPREF1078_RS07450 at 19.093 kb on - strand, within HMPREF1078_RS07450 at 19.337 kb on - strand at 19.372 kb on + strand at 19.446 kb on - strand at 19.446 kb on - strand at 19.471 kb on + strand at 19.505 kb on - strand at 19.505 kb on - strand at 19.522 kb on + strand at 19.532 kb on + strand at 19.532 kb on + strand at 19.552 kb on + strand at 19.553 kb on - strand at 19.704 kb on - strand, within HMPREF1078_RS07455 at 19.708 kb on + strand, within HMPREF1078_RS07455 at 19.709 kb on - strand, within HMPREF1078_RS07455 at 19.709 kb on - strand, within HMPREF1078_RS07455 at 19.724 kb on - strand, within HMPREF1078_RS07455 at 19.744 kb on + strand, within HMPREF1078_RS07455 at 19.745 kb on - strand, within HMPREF1078_RS07455 at 19.745 kb on - strand, within HMPREF1078_RS07455 at 19.745 kb on - strand, within HMPREF1078_RS07455 at 19.866 kb on - strand, within HMPREF1078_RS07455 at 19.866 kb on - strand, within HMPREF1078_RS07455 at 19.867 kb on + strand, within HMPREF1078_RS07455 at 19.867 kb on + strand, within HMPREF1078_RS07455 at 19.931 kb on + strand, within HMPREF1078_RS07455 at 19.931 kb on + strand, within HMPREF1078_RS07455 at 19.932 kb on - strand, within HMPREF1078_RS07455 at 19.933 kb on + strand, within HMPREF1078_RS07455 at 19.933 kb on + strand, within HMPREF1078_RS07455 at 19.933 kb on + strand, within HMPREF1078_RS07455 at 19.933 kb on + strand, within HMPREF1078_RS07455 at 19.933 kb on + strand, within HMPREF1078_RS07455 at 19.933 kb on + strand, within HMPREF1078_RS07455 at 19.934 kb on - strand, within HMPREF1078_RS07455 at 19.934 kb on - strand, within HMPREF1078_RS07455 at 19.934 kb on - strand, within HMPREF1078_RS07455 at 19.934 kb on - strand, within HMPREF1078_RS07455 at 19.934 kb on - strand, within HMPREF1078_RS07455 at 19.934 kb on - strand, within HMPREF1078_RS07455 at 19.934 kb on - strand, within HMPREF1078_RS07455 at 19.934 kb on - strand, within HMPREF1078_RS07455 at 19.937 kb on + strand, within HMPREF1078_RS07455 at 19.937 kb on + strand, within HMPREF1078_RS07455 at 19.937 kb on + strand, within HMPREF1078_RS07455 at 19.937 kb on + strand, within HMPREF1078_RS07455 at 19.938 kb on - strand, within HMPREF1078_RS07455 at 19.938 kb on - strand, within HMPREF1078_RS07455 at 19.938 kb on - strand, within HMPREF1078_RS07455 at 19.938 kb on - strand, within HMPREF1078_RS07455 at 19.940 kb on - strand, within HMPREF1078_RS07455 at 19.954 kb on - strand, within HMPREF1078_RS07455 at 19.985 kb on + strand, within HMPREF1078_RS07455 at 19.986 kb on - strand, within HMPREF1078_RS07455 at 20.026 kb on + strand, within HMPREF1078_RS07455 at 20.026 kb on + strand, within HMPREF1078_RS07455 at 20.027 kb on - strand, within HMPREF1078_RS07455 at 20.031 kb on - strand, within HMPREF1078_RS07455 at 20.046 kb on + strand, within HMPREF1078_RS07455 at 20.046 kb on + strand, within HMPREF1078_RS07455 at 20.047 kb on - strand, within HMPREF1078_RS07455 at 20.047 kb on - strand, within HMPREF1078_RS07455 at 20.048 kb on + strand, within HMPREF1078_RS07455 at 20.072 kb on + strand, within HMPREF1078_RS07455 at 20.072 kb on + strand, within HMPREF1078_RS07455 at 20.073 kb on - strand, within HMPREF1078_RS07455 at 20.073 kb on - strand, within HMPREF1078_RS07455 at 20.073 kb on - strand, within HMPREF1078_RS07455 at 20.185 kb on + strand at 20.233 kb on + strand at 20.234 kb on - strand at 20.238 kb on + strand at 20.262 kb on + strand at 20.357 kb on + strand at 20.358 kb on - strand at 20.358 kb on - strand at 20.377 kb on + strand at 20.378 kb on - strand at 20.472 kb on - strand, within HMPREF1078_RS07460 at 20.473 kb on + strand, within HMPREF1078_RS07460 at 20.508 kb on + strand, within HMPREF1078_RS07460 at 20.509 kb on - strand, within HMPREF1078_RS07460
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 16,721 + HMPREF1078_RS07445 0.59 +0.2 16,738 - HMPREF1078_RS07445 0.60 -0.6 16,892 + HMPREF1078_RS07445 0.68 -0.3 16,959 + HMPREF1078_RS07445 0.71 -0.2 16,960 - HMPREF1078_RS07445 0.72 -0.1 16,972 + HMPREF1078_RS07445 0.72 +1.8 16,994 + HMPREF1078_RS07445 0.73 +1.1 17,023 + HMPREF1078_RS07445 0.75 +2.7 17,024 - HMPREF1078_RS07445 0.75 +0.1 17,140 - HMPREF1078_RS07445 0.81 -0.5 17,218 - HMPREF1078_RS07445 0.85 -1.0 17,465 + -0.1 17,528 - -1.1 17,531 + +0.9 17,532 - +2.1 17,532 - -0.3 17,543 + +0.0 17,543 + -0.2 17,543 + -1.7 17,544 - -1.5 17,544 - +1.1 17,544 - +0.4 17,551 - -0.8 17,573 + -0.8 17,574 - +0.7 17,578 - -0.6 17,596 + -0.9 17,638 + +0.1 17,638 + -0.8 17,639 - -2.3 17,640 + -0.9 17,640 + +0.4 17,676 - +0.4 17,680 + -0.3 17,681 - -0.6 17,719 + -0.5 17,816 + +0.4 17,967 + HMPREF1078_RS07450 0.16 -0.4 17,993 - HMPREF1078_RS07450 0.17 -0.1 18,052 + HMPREF1078_RS07450 0.20 -1.8 18,052 + HMPREF1078_RS07450 0.20 -0.1 18,328 - HMPREF1078_RS07450 0.35 -1.7 18,334 + HMPREF1078_RS07450 0.36 -0.1 18,392 + HMPREF1078_RS07450 0.39 -1.4 18,519 - HMPREF1078_RS07450 0.46 +0.1 18,595 + HMPREF1078_RS07450 0.50 +0.9 18,608 - HMPREF1078_RS07450 0.51 +2.7 18,724 + HMPREF1078_RS07450 0.57 -0.5 18,725 - HMPREF1078_RS07450 0.57 -1.1 18,800 + HMPREF1078_RS07450 0.61 +0.1 18,850 + HMPREF1078_RS07450 0.64 -1.0 18,851 - HMPREF1078_RS07450 0.64 -2.1 18,895 + HMPREF1078_RS07450 0.66 -0.9 18,967 + HMPREF1078_RS07450 0.70 -0.3 18,968 - HMPREF1078_RS07450 0.70 -0.3 19,033 + HMPREF1078_RS07450 0.74 -0.5 19,093 - HMPREF1078_RS07450 0.77 +0.5 19,337 - +0.2 19,372 + -1.4 19,446 - -1.2 19,446 - +1.7 19,471 + -0.8 19,505 - -1.0 19,505 - -0.3 19,522 + -1.9 19,532 + +0.2 19,532 + +0.3 19,552 + +0.7 19,553 - -1.4 19,704 - HMPREF1078_RS07455 0.27 -1.1 19,708 + HMPREF1078_RS07455 0.28 +0.8 19,709 - HMPREF1078_RS07455 0.28 +0.6 19,709 - HMPREF1078_RS07455 0.28 +0.9 19,724 - HMPREF1078_RS07455 0.30 +0.6 19,744 + HMPREF1078_RS07455 0.33 -1.2 19,745 - HMPREF1078_RS07455 0.33 -0.8 19,745 - HMPREF1078_RS07455 0.33 +1.4 19,745 - HMPREF1078_RS07455 0.33 -1.8 19,866 - HMPREF1078_RS07455 0.51 +0.7 19,866 - HMPREF1078_RS07455 0.51 +0.5 19,867 + HMPREF1078_RS07455 0.51 -1.2 19,867 + HMPREF1078_RS07455 0.51 -0.2 19,931 + HMPREF1078_RS07455 0.61 -0.7 19,931 + HMPREF1078_RS07455 0.61 +0.2 19,932 - HMPREF1078_RS07455 0.61 +1.5 19,933 + HMPREF1078_RS07455 0.61 -0.8 19,933 + HMPREF1078_RS07455 0.61 +0.2 19,933 + HMPREF1078_RS07455 0.61 +1.2 19,933 + HMPREF1078_RS07455 0.61 +0.0 19,933 + HMPREF1078_RS07455 0.61 +2.7 19,933 + HMPREF1078_RS07455 0.61 -1.3 19,934 - HMPREF1078_RS07455 0.61 -0.3 19,934 - HMPREF1078_RS07455 0.61 -0.7 19,934 - HMPREF1078_RS07455 0.61 +0.8 19,934 - HMPREF1078_RS07455 0.61 -1.3 19,934 - HMPREF1078_RS07455 0.61 -0.5 19,934 - HMPREF1078_RS07455 0.61 -0.5 19,934 - HMPREF1078_RS07455 0.61 -2.8 19,934 - HMPREF1078_RS07455 0.61 +0.8 19,937 + HMPREF1078_RS07455 0.62 -1.6 19,937 + HMPREF1078_RS07455 0.62 -0.7 19,937 + HMPREF1078_RS07455 0.62 -1.1 19,937 + HMPREF1078_RS07455 0.62 -0.7 19,938 - HMPREF1078_RS07455 0.62 -0.2 19,938 - HMPREF1078_RS07455 0.62 +0.5 19,938 - HMPREF1078_RS07455 0.62 -1.4 19,938 - HMPREF1078_RS07455 0.62 -0.9 19,940 - HMPREF1078_RS07455 0.62 +1.4 19,954 - HMPREF1078_RS07455 0.64 -1.3 19,985 + HMPREF1078_RS07455 0.69 +0.5 19,986 - HMPREF1078_RS07455 0.69 -0.1 20,026 + HMPREF1078_RS07455 0.75 +1.1 20,026 + HMPREF1078_RS07455 0.75 +0.1 20,027 - HMPREF1078_RS07455 0.75 -0.7 20,031 - HMPREF1078_RS07455 0.76 -0.4 20,046 + HMPREF1078_RS07455 0.78 -0.8 20,046 + HMPREF1078_RS07455 0.78 -1.0 20,047 - HMPREF1078_RS07455 0.78 -0.4 20,047 - HMPREF1078_RS07455 0.78 -0.2 20,048 + HMPREF1078_RS07455 0.78 -1.7 20,072 + HMPREF1078_RS07455 0.82 +0.9 20,072 + HMPREF1078_RS07455 0.82 +1.4 20,073 - HMPREF1078_RS07455 0.82 -0.2 20,073 - HMPREF1078_RS07455 0.82 -3.4 20,073 - HMPREF1078_RS07455 0.82 +0.5 20,185 + -1.2 20,233 + +0.2 20,234 - -2.3 20,238 + -0.2 20,262 + -0.4 20,357 + +0.5 20,358 - +1.7 20,358 - -1.5 20,377 + +0.4 20,378 - +1.9 20,472 - HMPREF1078_RS07460 0.14 -1.0 20,473 + HMPREF1078_RS07460 0.14 -0.2 20,508 + HMPREF1078_RS07460 0.18 -1.1 20,509 - HMPREF1078_RS07460 0.18 -2.5
Or see this region's nucleotide sequence