Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07435 and HMPREF1078_RS07440 overlap by 4 nucleotides HMPREF1078_RS07440 and HMPREF1078_RS07445 overlap by 8 nucleotides
HMPREF1078_RS07435: HMPREF1078_RS07435 - precorrin-3B C(17)-methyltransferase, at 12,913 to 14,325
_RS07435
HMPREF1078_RS07440: HMPREF1078_RS07440 - precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE, at 14,322 to 15,581
_RS07440
HMPREF1078_RS07445: HMPREF1078_RS07445 - precorrin-4 C(11)-methyltransferase, at 15,574 to 17,511
_RS07445
Position (kb) 14
15
16 Strain fitness (log2 ratio) -2
-1
0
1
2 at 13.405 kb on + strand, within HMPREF1078_RS07435 at 13.405 kb on + strand, within HMPREF1078_RS07435 at 13.406 kb on - strand, within HMPREF1078_RS07435 at 13.609 kb on + strand, within HMPREF1078_RS07435 at 13.746 kb on - strand, within HMPREF1078_RS07435 at 13.818 kb on - strand, within HMPREF1078_RS07435 at 14.061 kb on - strand, within HMPREF1078_RS07435 at 14.061 kb on - strand, within HMPREF1078_RS07435 at 14.063 kb on - strand, within HMPREF1078_RS07435 at 14.063 kb on - strand, within HMPREF1078_RS07435 at 14.111 kb on + strand, within HMPREF1078_RS07435 at 14.143 kb on - strand, within HMPREF1078_RS07435 at 14.165 kb on + strand, within HMPREF1078_RS07435 at 14.193 kb on - strand at 14.215 kb on - strand at 14.313 kb on + strand at 14.321 kb on + strand at 14.321 kb on + strand at 14.322 kb on - strand at 14.322 kb on - strand at 14.367 kb on + strand at 14.367 kb on + strand at 14.367 kb on + strand at 14.367 kb on + strand at 14.368 kb on - strand at 14.369 kb on + strand at 14.399 kb on + strand at 14.399 kb on + strand at 14.406 kb on - strand at 14.528 kb on - strand, within HMPREF1078_RS07440 at 14.547 kb on + strand, within HMPREF1078_RS07440 at 14.806 kb on + strand, within HMPREF1078_RS07440 at 14.875 kb on - strand, within HMPREF1078_RS07440 at 14.899 kb on + strand, within HMPREF1078_RS07440 at 15.050 kb on + strand, within HMPREF1078_RS07440 at 15.103 kb on + strand, within HMPREF1078_RS07440 at 15.109 kb on + strand, within HMPREF1078_RS07440 at 15.118 kb on + strand, within HMPREF1078_RS07440 at 15.128 kb on + strand, within HMPREF1078_RS07440 at 15.128 kb on + strand, within HMPREF1078_RS07440 at 15.205 kb on + strand, within HMPREF1078_RS07440 at 15.209 kb on + strand, within HMPREF1078_RS07440 at 15.287 kb on - strand, within HMPREF1078_RS07440 at 15.297 kb on - strand, within HMPREF1078_RS07440 at 15.397 kb on + strand, within HMPREF1078_RS07440 at 15.438 kb on - strand, within HMPREF1078_RS07440 at 15.502 kb on + strand at 15.502 kb on + strand at 15.514 kb on + strand at 15.615 kb on + strand at 15.615 kb on + strand at 15.615 kb on + strand at 15.671 kb on - strand at 15.676 kb on - strand at 15.793 kb on - strand, within HMPREF1078_RS07445 at 15.860 kb on - strand, within HMPREF1078_RS07445 at 15.860 kb on - strand, within HMPREF1078_RS07445 at 15.872 kb on + strand, within HMPREF1078_RS07445 at 15.885 kb on + strand, within HMPREF1078_RS07445 at 16.025 kb on - strand, within HMPREF1078_RS07445 at 16.043 kb on + strand, within HMPREF1078_RS07445 at 16.192 kb on + strand, within HMPREF1078_RS07445 at 16.193 kb on - strand, within HMPREF1078_RS07445 at 16.194 kb on + strand, within HMPREF1078_RS07445 at 16.194 kb on + strand, within HMPREF1078_RS07445 at 16.194 kb on + strand, within HMPREF1078_RS07445 at 16.194 kb on + strand, within HMPREF1078_RS07445 at 16.195 kb on - strand, within HMPREF1078_RS07445 at 16.195 kb on - strand, within HMPREF1078_RS07445 at 16.232 kb on - strand, within HMPREF1078_RS07445 at 16.232 kb on - strand, within HMPREF1078_RS07445 at 16.232 kb on - strand, within HMPREF1078_RS07445 at 16.234 kb on - strand, within HMPREF1078_RS07445 at 16.240 kb on - strand, within HMPREF1078_RS07445 at 16.240 kb on - strand, within HMPREF1078_RS07445 at 16.291 kb on + strand, within HMPREF1078_RS07445 at 16.291 kb on + strand, within HMPREF1078_RS07445 at 16.292 kb on - strand, within HMPREF1078_RS07445 at 16.295 kb on - strand, within HMPREF1078_RS07445 at 16.346 kb on + strand, within HMPREF1078_RS07445 at 16.404 kb on + strand, within HMPREF1078_RS07445 at 16.404 kb on + strand, within HMPREF1078_RS07445 at 16.405 kb on - strand, within HMPREF1078_RS07445 at 16.487 kb on + strand, within HMPREF1078_RS07445 at 16.507 kb on + strand, within HMPREF1078_RS07445 at 16.507 kb on + strand, within HMPREF1078_RS07445 at 16.508 kb on - strand, within HMPREF1078_RS07445
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 13,405 + HMPREF1078_RS07435 0.35 -0.5 13,405 + HMPREF1078_RS07435 0.35 -0.3 13,406 - HMPREF1078_RS07435 0.35 +0.5 13,609 + HMPREF1078_RS07435 0.49 -0.1 13,746 - HMPREF1078_RS07435 0.59 -1.4 13,818 - HMPREF1078_RS07435 0.64 -0.9 14,061 - HMPREF1078_RS07435 0.81 +0.7 14,061 - HMPREF1078_RS07435 0.81 +0.2 14,063 - HMPREF1078_RS07435 0.81 +0.7 14,063 - HMPREF1078_RS07435 0.81 -0.3 14,111 + HMPREF1078_RS07435 0.85 -1.5 14,143 - HMPREF1078_RS07435 0.87 +0.9 14,165 + HMPREF1078_RS07435 0.89 -1.9 14,193 - -0.9 14,215 - +0.4 14,313 + -0.3 14,321 + -2.2 14,321 + +2.3 14,322 - -1.3 14,322 - +0.4 14,367 + +0.4 14,367 + -0.8 14,367 + +0.6 14,367 + +0.0 14,368 - +0.1 14,369 + -1.0 14,399 + +0.5 14,399 + +1.1 14,406 - +0.2 14,528 - HMPREF1078_RS07440 0.16 -0.3 14,547 + HMPREF1078_RS07440 0.18 -1.1 14,806 + HMPREF1078_RS07440 0.38 -1.5 14,875 - HMPREF1078_RS07440 0.44 -0.9 14,899 + HMPREF1078_RS07440 0.46 +0.4 15,050 + HMPREF1078_RS07440 0.58 +0.7 15,103 + HMPREF1078_RS07440 0.62 +2.0 15,109 + HMPREF1078_RS07440 0.62 -0.4 15,118 + HMPREF1078_RS07440 0.63 -1.9 15,128 + HMPREF1078_RS07440 0.64 -0.1 15,128 + HMPREF1078_RS07440 0.64 -0.3 15,205 + HMPREF1078_RS07440 0.70 +0.7 15,209 + HMPREF1078_RS07440 0.70 +0.1 15,287 - HMPREF1078_RS07440 0.77 +0.1 15,297 - HMPREF1078_RS07440 0.77 +0.4 15,397 + HMPREF1078_RS07440 0.85 -0.9 15,438 - HMPREF1078_RS07440 0.89 -1.6 15,502 + -1.1 15,502 + -1.2 15,514 + +1.1 15,615 + +2.7 15,615 + -1.2 15,615 + +0.6 15,671 - -0.8 15,676 - +2.7 15,793 - HMPREF1078_RS07445 0.11 +0.7 15,860 - HMPREF1078_RS07445 0.15 -1.5 15,860 - HMPREF1078_RS07445 0.15 +1.7 15,872 + HMPREF1078_RS07445 0.15 -0.8 15,885 + HMPREF1078_RS07445 0.16 +0.4 16,025 - HMPREF1078_RS07445 0.23 +0.8 16,043 + HMPREF1078_RS07445 0.24 -0.5 16,192 + HMPREF1078_RS07445 0.32 -0.1 16,193 - HMPREF1078_RS07445 0.32 +1.3 16,194 + HMPREF1078_RS07445 0.32 +0.7 16,194 + HMPREF1078_RS07445 0.32 -0.8 16,194 + HMPREF1078_RS07445 0.32 -0.6 16,194 + HMPREF1078_RS07445 0.32 -1.8 16,195 - HMPREF1078_RS07445 0.32 -1.3 16,195 - HMPREF1078_RS07445 0.32 -0.1 16,232 - HMPREF1078_RS07445 0.34 -0.1 16,232 - HMPREF1078_RS07445 0.34 +0.7 16,232 - HMPREF1078_RS07445 0.34 -1.3 16,234 - HMPREF1078_RS07445 0.34 +1.1 16,240 - HMPREF1078_RS07445 0.34 +0.4 16,240 - HMPREF1078_RS07445 0.34 +1.3 16,291 + HMPREF1078_RS07445 0.37 -0.8 16,291 + HMPREF1078_RS07445 0.37 -1.1 16,292 - HMPREF1078_RS07445 0.37 -0.9 16,295 - HMPREF1078_RS07445 0.37 -1.3 16,346 + HMPREF1078_RS07445 0.40 -0.1 16,404 + HMPREF1078_RS07445 0.43 +0.4 16,404 + HMPREF1078_RS07445 0.43 -0.4 16,405 - HMPREF1078_RS07445 0.43 -0.6 16,487 + HMPREF1078_RS07445 0.47 -1.4 16,507 + HMPREF1078_RS07445 0.48 -0.6 16,507 + HMPREF1078_RS07445 0.48 -0.1 16,508 - HMPREF1078_RS07445 0.48 -0.9
Or see this region's nucleotide sequence