Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07215 and HMPREF1078_RS07220 are separated by 3 nucleotides HMPREF1078_RS07220 and HMPREF1078_RS07225 are separated by 111 nucleotides HMPREF1078_RS07225 and HMPREF1078_RS19825 are separated by 46 nucleotides HMPREF1078_RS19825 and HMPREF1078_RS19830 are separated by 15 nucleotides
HMPREF1078_RS07215: HMPREF1078_RS07215 - 2-oxoacid:acceptor oxidoreductase subunit alpha, at 865,393 to 867,249
_RS07215
HMPREF1078_RS07220: HMPREF1078_RS07220 - 2-oxoacid:ferredoxin oxidoreductase subunit beta, at 867,253 to 868,269
_RS07220
HMPREF1078_RS07225: HMPREF1078_RS07225 - nucleotidyltransferase family protein, at 868,381 to 868,674
_RS07225
HMPREF1078_RS19825: HMPREF1078_RS19825 - hypothetical protein, at 868,721 to 868,897
_RS19825
HMPREF1078_RS19830: HMPREF1078_RS19830 - DUF86 domain-containing protein, at 868,913 to 869,062
_RS19830
Position (kb) 867
868
869 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 866.286 kb on + strand, within HMPREF1078_RS07215 at 866.439 kb on + strand, within HMPREF1078_RS07215 at 866.583 kb on + strand, within HMPREF1078_RS07215 at 866.583 kb on + strand, within HMPREF1078_RS07215 at 866.583 kb on + strand, within HMPREF1078_RS07215 at 866.584 kb on - strand, within HMPREF1078_RS07215 at 866.584 kb on - strand, within HMPREF1078_RS07215 at 866.584 kb on - strand, within HMPREF1078_RS07215 at 866.584 kb on - strand, within HMPREF1078_RS07215 at 866.684 kb on - strand, within HMPREF1078_RS07215 at 866.684 kb on - strand, within HMPREF1078_RS07215 at 866.684 kb on - strand, within HMPREF1078_RS07215 at 866.695 kb on + strand, within HMPREF1078_RS07215 at 866.764 kb on - strand, within HMPREF1078_RS07215 at 866.829 kb on + strand, within HMPREF1078_RS07215 at 866.971 kb on + strand, within HMPREF1078_RS07215 at 866.971 kb on + strand, within HMPREF1078_RS07215 at 866.971 kb on + strand, within HMPREF1078_RS07215 at 866.972 kb on - strand, within HMPREF1078_RS07215 at 867.088 kb on + strand at 867.136 kb on + strand at 867.304 kb on + strand at 867.304 kb on + strand at 867.304 kb on + strand at 867.304 kb on + strand at 867.305 kb on - strand at 867.308 kb on + strand at 867.308 kb on + strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.375 kb on - strand, within HMPREF1078_RS07220 at 867.390 kb on + strand, within HMPREF1078_RS07220 at 867.390 kb on + strand, within HMPREF1078_RS07220 at 867.394 kb on - strand, within HMPREF1078_RS07220 at 867.394 kb on - strand, within HMPREF1078_RS07220 at 867.394 kb on - strand, within HMPREF1078_RS07220 at 867.402 kb on + strand, within HMPREF1078_RS07220 at 867.403 kb on - strand, within HMPREF1078_RS07220 at 867.436 kb on + strand, within HMPREF1078_RS07220 at 867.437 kb on - strand, within HMPREF1078_RS07220 at 867.437 kb on - strand, within HMPREF1078_RS07220 at 867.439 kb on + strand, within HMPREF1078_RS07220 at 867.439 kb on + strand, within HMPREF1078_RS07220 at 867.440 kb on - strand, within HMPREF1078_RS07220 at 867.451 kb on + strand, within HMPREF1078_RS07220 at 867.452 kb on - strand, within HMPREF1078_RS07220 at 867.452 kb on - strand, within HMPREF1078_RS07220 at 867.452 kb on - strand, within HMPREF1078_RS07220 at 867.463 kb on - strand, within HMPREF1078_RS07220 at 867.635 kb on + strand, within HMPREF1078_RS07220 at 867.635 kb on + strand, within HMPREF1078_RS07220 at 867.636 kb on - strand, within HMPREF1078_RS07220 at 867.636 kb on - strand, within HMPREF1078_RS07220 at 867.636 kb on - strand, within HMPREF1078_RS07220 at 867.636 kb on - strand, within HMPREF1078_RS07220 at 867.636 kb on - strand, within HMPREF1078_RS07220 at 867.637 kb on + strand, within HMPREF1078_RS07220 at 867.637 kb on + strand, within HMPREF1078_RS07220 at 867.638 kb on - strand, within HMPREF1078_RS07220 at 867.638 kb on - strand, within HMPREF1078_RS07220 at 867.638 kb on - strand, within HMPREF1078_RS07220 at 867.658 kb on + strand, within HMPREF1078_RS07220 at 867.832 kb on - strand, within HMPREF1078_RS07220 at 867.886 kb on - strand, within HMPREF1078_RS07220 at 868.037 kb on + strand, within HMPREF1078_RS07220 at 868.038 kb on + strand, within HMPREF1078_RS07220 at 868.059 kb on - strand, within HMPREF1078_RS07220 at 868.120 kb on - strand, within HMPREF1078_RS07220 at 868.165 kb on + strand, within HMPREF1078_RS07220 at 868.165 kb on + strand, within HMPREF1078_RS07220 at 868.165 kb on + strand, within HMPREF1078_RS07220 at 868.166 kb on - strand, within HMPREF1078_RS07220 at 868.263 kb on - strand at 868.330 kb on - strand at 868.345 kb on + strand at 868.346 kb on - strand at 868.376 kb on + strand at 868.376 kb on + strand at 868.403 kb on + strand at 868.420 kb on + strand, within HMPREF1078_RS07225 at 868.420 kb on + strand, within HMPREF1078_RS07225 at 868.421 kb on - strand, within HMPREF1078_RS07225 at 868.524 kb on + strand, within HMPREF1078_RS07225 at 868.543 kb on + strand, within HMPREF1078_RS07225 at 868.547 kb on - strand, within HMPREF1078_RS07225 at 868.547 kb on - strand, within HMPREF1078_RS07225 at 868.574 kb on + strand, within HMPREF1078_RS07225 at 868.575 kb on - strand, within HMPREF1078_RS07225 at 868.672 kb on + strand at 868.684 kb on - strand at 868.690 kb on + strand at 868.691 kb on - strand at 868.705 kb on + strand at 868.707 kb on + strand at 868.707 kb on + strand at 868.707 kb on + strand at 868.708 kb on - strand at 868.771 kb on + strand, within HMPREF1078_RS19825 at 868.816 kb on - strand, within HMPREF1078_RS19825 at 868.872 kb on + strand, within HMPREF1078_RS19825 at 868.873 kb on - strand, within HMPREF1078_RS19825 at 868.961 kb on - strand, within HMPREF1078_RS19830 at 868.976 kb on - strand, within HMPREF1078_RS19830 at 868.981 kb on + strand, within HMPREF1078_RS19830 at 868.981 kb on + strand, within HMPREF1078_RS19830 at 868.982 kb on - strand, within HMPREF1078_RS19830 at 868.986 kb on + strand, within HMPREF1078_RS19830 at 868.987 kb on - strand, within HMPREF1078_RS19830 at 868.987 kb on - strand, within HMPREF1078_RS19830 at 868.987 kb on - strand, within HMPREF1078_RS19830 at 869.028 kb on + strand, within HMPREF1078_RS19830 at 869.028 kb on + strand, within HMPREF1078_RS19830 at 869.029 kb on - strand, within HMPREF1078_RS19830 at 869.050 kb on + strand at 869.050 kb on + strand at 869.051 kb on - strand at 869.051 kb on - strand at 869.051 kb on - strand at 869.051 kb on - strand at 869.084 kb on + strand at 869.085 kb on - strand at 869.100 kb on - strand at 869.165 kb on + strand at 869.165 kb on + strand at 869.165 kb on + strand at 869.165 kb on + strand at 869.252 kb on + strand at 869.252 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 866,286 + HMPREF1078_RS07215 0.48 -2.3 866,439 + HMPREF1078_RS07215 0.56 -3.7 866,583 + HMPREF1078_RS07215 0.64 -4.0 866,583 + HMPREF1078_RS07215 0.64 -4.8 866,583 + HMPREF1078_RS07215 0.64 +0.9 866,584 - HMPREF1078_RS07215 0.64 -2.5 866,584 - HMPREF1078_RS07215 0.64 -1.5 866,584 - HMPREF1078_RS07215 0.64 -0.2 866,584 - HMPREF1078_RS07215 0.64 +0.1 866,684 - HMPREF1078_RS07215 0.70 -1.5 866,684 - HMPREF1078_RS07215 0.70 -2.3 866,684 - HMPREF1078_RS07215 0.70 -0.5 866,695 + HMPREF1078_RS07215 0.70 -2.3 866,764 - HMPREF1078_RS07215 0.74 -2.1 866,829 + HMPREF1078_RS07215 0.77 -0.2 866,971 + HMPREF1078_RS07215 0.85 -1.8 866,971 + HMPREF1078_RS07215 0.85 -1.5 866,971 + HMPREF1078_RS07215 0.85 -1.6 866,972 - HMPREF1078_RS07215 0.85 -1.3 867,088 + -2.6 867,136 + -0.8 867,304 + -3.4 867,304 + -0.2 867,304 + -1.5 867,304 + -2.3 867,305 - -2.5 867,308 + -3.0 867,308 + -0.5 867,309 - -1.4 867,309 - -1.6 867,375 - HMPREF1078_RS07220 0.12 -2.8 867,390 + HMPREF1078_RS07220 0.13 -4.0 867,390 + HMPREF1078_RS07220 0.13 -1.8 867,394 - HMPREF1078_RS07220 0.14 -1.5 867,394 - HMPREF1078_RS07220 0.14 -1.4 867,394 - HMPREF1078_RS07220 0.14 -0.5 867,402 + HMPREF1078_RS07220 0.15 -2.4 867,403 - HMPREF1078_RS07220 0.15 -3.4 867,436 + HMPREF1078_RS07220 0.18 -2.5 867,437 - HMPREF1078_RS07220 0.18 -0.6 867,437 - HMPREF1078_RS07220 0.18 -3.0 867,439 + HMPREF1078_RS07220 0.18 -1.9 867,439 + HMPREF1078_RS07220 0.18 -2.5 867,440 - HMPREF1078_RS07220 0.18 -2.5 867,451 + HMPREF1078_RS07220 0.19 -0.6 867,452 - HMPREF1078_RS07220 0.20 -1.9 867,452 - HMPREF1078_RS07220 0.20 -0.9 867,452 - HMPREF1078_RS07220 0.20 -2.6 867,463 - HMPREF1078_RS07220 0.21 -0.1 867,635 + HMPREF1078_RS07220 0.38 -2.5 867,635 + HMPREF1078_RS07220 0.38 -1.6 867,636 - HMPREF1078_RS07220 0.38 -3.2 867,636 - HMPREF1078_RS07220 0.38 -3.5 867,636 - HMPREF1078_RS07220 0.38 -1.0 867,636 - HMPREF1078_RS07220 0.38 -2.5 867,636 - HMPREF1078_RS07220 0.38 -1.3 867,637 + HMPREF1078_RS07220 0.38 -3.6 867,637 + HMPREF1078_RS07220 0.38 -3.8 867,638 - HMPREF1078_RS07220 0.38 -2.1 867,638 - HMPREF1078_RS07220 0.38 -2.3 867,638 - HMPREF1078_RS07220 0.38 -0.5 867,658 + HMPREF1078_RS07220 0.40 -3.7 867,832 - HMPREF1078_RS07220 0.57 -3.1 867,886 - HMPREF1078_RS07220 0.62 -3.2 868,037 + HMPREF1078_RS07220 0.77 +0.0 868,038 + HMPREF1078_RS07220 0.77 -3.3 868,059 - HMPREF1078_RS07220 0.79 -4.2 868,120 - HMPREF1078_RS07220 0.85 -0.8 868,165 + HMPREF1078_RS07220 0.90 -3.0 868,165 + HMPREF1078_RS07220 0.90 -0.3 868,165 + HMPREF1078_RS07220 0.90 -2.3 868,166 - HMPREF1078_RS07220 0.90 -0.8 868,263 - +1.3 868,330 - +0.4 868,345 + -0.6 868,346 - +0.1 868,376 + -0.9 868,376 + -1.1 868,403 + +0.7 868,420 + HMPREF1078_RS07225 0.13 +0.2 868,420 + HMPREF1078_RS07225 0.13 -2.6 868,421 - HMPREF1078_RS07225 0.14 +1.1 868,524 + HMPREF1078_RS07225 0.49 -0.8 868,543 + HMPREF1078_RS07225 0.55 +0.2 868,547 - HMPREF1078_RS07225 0.56 -0.2 868,547 - HMPREF1078_RS07225 0.56 -1.6 868,574 + HMPREF1078_RS07225 0.66 -0.1 868,575 - HMPREF1078_RS07225 0.66 -0.4 868,672 + -2.2 868,684 - +0.3 868,690 + -0.3 868,691 - +0.1 868,705 + -0.1 868,707 + -0.8 868,707 + -0.2 868,707 + -0.2 868,708 - +1.3 868,771 + HMPREF1078_RS19825 0.28 +0.9 868,816 - HMPREF1078_RS19825 0.54 +1.2 868,872 + HMPREF1078_RS19825 0.85 -0.8 868,873 - HMPREF1078_RS19825 0.86 -1.3 868,961 - HMPREF1078_RS19830 0.32 +1.4 868,976 - HMPREF1078_RS19830 0.42 +2.8 868,981 + HMPREF1078_RS19830 0.45 -0.2 868,981 + HMPREF1078_RS19830 0.45 -1.1 868,982 - HMPREF1078_RS19830 0.46 +0.9 868,986 + HMPREF1078_RS19830 0.49 +0.4 868,987 - HMPREF1078_RS19830 0.49 +0.4 868,987 - HMPREF1078_RS19830 0.49 -1.4 868,987 - HMPREF1078_RS19830 0.49 -1.3 869,028 + HMPREF1078_RS19830 0.77 -1.1 869,028 + HMPREF1078_RS19830 0.77 -1.9 869,029 - HMPREF1078_RS19830 0.77 -0.8 869,050 + -0.7 869,050 + +1.0 869,051 - +2.1 869,051 - +0.2 869,051 - +0.2 869,051 - -1.3 869,084 + -0.7 869,085 - +0.1 869,100 - +0.7 869,165 + -1.3 869,165 + +0.4 869,165 + -0.2 869,165 + -0.6 869,252 + -0.7 869,252 + +0.8
Or see this region's nucleotide sequence