Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06610 and HMPREF1078_RS06615 are separated by 136 nucleotides HMPREF1078_RS06615 and HMPREF1078_RS06620 are separated by 19 nucleotides HMPREF1078_RS06620 and HMPREF1078_RS06625 are separated by 10 nucleotides
HMPREF1078_RS06610: HMPREF1078_RS06610 - hypothetical protein, at 711,318 to 712,019
_RS06610
HMPREF1078_RS06615: HMPREF1078_RS06615 - PH domain-containing protein, at 712,156 to 712,575
_RS06615
HMPREF1078_RS06620: HMPREF1078_RS06620 - hypothetical protein, at 712,595 to 712,975
_RS06620
HMPREF1078_RS06625: HMPREF1078_RS06625 - dihydrolipoyl dehydrogenase, at 712,986 to 714,329
_RS06625
Position (kb) 712
713 Strain fitness (log2 ratio) -2
-1
0
1
2 at 711.171 kb on + strand at 711.172 kb on - strand at 711.172 kb on - strand at 711.172 kb on - strand at 711.172 kb on - strand at 711.174 kb on - strand at 711.174 kb on - strand at 711.206 kb on - strand at 711.225 kb on + strand at 711.225 kb on + strand at 711.226 kb on - strand at 711.266 kb on + strand at 711.290 kb on - strand at 711.294 kb on - strand at 711.304 kb on - strand at 711.318 kb on - strand at 711.335 kb on - strand at 711.335 kb on - strand at 711.435 kb on + strand, within HMPREF1078_RS06610 at 711.436 kb on - strand, within HMPREF1078_RS06610 at 711.472 kb on - strand, within HMPREF1078_RS06610 at 711.472 kb on - strand, within HMPREF1078_RS06610 at 711.525 kb on + strand, within HMPREF1078_RS06610 at 711.525 kb on + strand, within HMPREF1078_RS06610 at 711.548 kb on + strand, within HMPREF1078_RS06610 at 711.548 kb on + strand, within HMPREF1078_RS06610 at 711.549 kb on - strand, within HMPREF1078_RS06610 at 711.728 kb on + strand, within HMPREF1078_RS06610 at 711.728 kb on + strand, within HMPREF1078_RS06610 at 711.728 kb on + strand, within HMPREF1078_RS06610 at 711.729 kb on - strand, within HMPREF1078_RS06610 at 711.732 kb on + strand, within HMPREF1078_RS06610 at 711.797 kb on + strand, within HMPREF1078_RS06610 at 711.801 kb on + strand, within HMPREF1078_RS06610 at 711.814 kb on - strand, within HMPREF1078_RS06610 at 711.833 kb on - strand, within HMPREF1078_RS06610 at 711.915 kb on + strand, within HMPREF1078_RS06610 at 711.921 kb on + strand, within HMPREF1078_RS06610 at 711.930 kb on + strand, within HMPREF1078_RS06610 at 711.967 kb on - strand at 711.967 kb on - strand at 711.969 kb on - strand at 711.969 kb on - strand at 711.993 kb on + strand at 711.995 kb on + strand at 711.995 kb on + strand at 712.012 kb on + strand at 712.013 kb on - strand at 712.022 kb on + strand at 712.023 kb on - strand at 712.027 kb on + strand at 712.027 kb on + strand at 712.027 kb on + strand at 712.028 kb on - strand at 712.028 kb on - strand at 712.028 kb on - strand at 712.028 kb on - strand at 712.028 kb on - strand at 712.029 kb on + strand at 712.059 kb on + strand at 712.075 kb on + strand at 712.284 kb on + strand, within HMPREF1078_RS06615 at 712.323 kb on + strand, within HMPREF1078_RS06615 at 712.323 kb on + strand, within HMPREF1078_RS06615 at 712.363 kb on - strand, within HMPREF1078_RS06615 at 712.387 kb on - strand, within HMPREF1078_RS06615 at 712.398 kb on + strand, within HMPREF1078_RS06615 at 712.436 kb on - strand, within HMPREF1078_RS06615 at 712.436 kb on - strand, within HMPREF1078_RS06615 at 712.539 kb on + strand at 712.636 kb on - strand, within HMPREF1078_RS06620 at 712.636 kb on - strand, within HMPREF1078_RS06620 at 712.636 kb on - strand, within HMPREF1078_RS06620 at 712.636 kb on - strand, within HMPREF1078_RS06620 at 712.636 kb on - strand, within HMPREF1078_RS06620 at 712.636 kb on - strand, within HMPREF1078_RS06620 at 712.681 kb on + strand, within HMPREF1078_RS06620 at 712.681 kb on + strand, within HMPREF1078_RS06620 at 712.717 kb on - strand, within HMPREF1078_RS06620 at 712.748 kb on - strand, within HMPREF1078_RS06620 at 712.748 kb on - strand, within HMPREF1078_RS06620 at 712.773 kb on + strand, within HMPREF1078_RS06620 at 712.887 kb on + strand, within HMPREF1078_RS06620 at 712.992 kb on + strand at 712.992 kb on + strand at 713.030 kb on + strand at 713.031 kb on - strand at 713.031 kb on - strand at 713.115 kb on - strand at 713.163 kb on - strand, within HMPREF1078_RS06625 at 713.237 kb on + strand, within HMPREF1078_RS06625 at 713.379 kb on + strand, within HMPREF1078_RS06625 at 713.379 kb on + strand, within HMPREF1078_RS06625 at 713.379 kb on + strand, within HMPREF1078_RS06625 at 713.425 kb on + strand, within HMPREF1078_RS06625 at 713.425 kb on + strand, within HMPREF1078_RS06625 at 713.487 kb on - strand, within HMPREF1078_RS06625
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 711,171 + -0.3 711,172 - +0.6 711,172 - +1.6 711,172 - +0.0 711,172 - +1.6 711,174 - +0.8 711,174 - +1.3 711,206 - -1.7 711,225 + +0.9 711,225 + -0.5 711,226 - +1.0 711,266 + +0.5 711,290 - -2.3 711,294 - -0.3 711,304 - -0.1 711,318 - +0.5 711,335 - +0.1 711,335 - -1.3 711,435 + HMPREF1078_RS06610 0.17 +0.7 711,436 - HMPREF1078_RS06610 0.17 -1.2 711,472 - HMPREF1078_RS06610 0.22 +0.1 711,472 - HMPREF1078_RS06610 0.22 -1.0 711,525 + HMPREF1078_RS06610 0.29 -0.1 711,525 + HMPREF1078_RS06610 0.29 -0.6 711,548 + HMPREF1078_RS06610 0.33 +1.0 711,548 + HMPREF1078_RS06610 0.33 -0.4 711,549 - HMPREF1078_RS06610 0.33 -0.3 711,728 + HMPREF1078_RS06610 0.58 +1.2 711,728 + HMPREF1078_RS06610 0.58 -0.3 711,728 + HMPREF1078_RS06610 0.58 -0.6 711,729 - HMPREF1078_RS06610 0.59 -0.3 711,732 + HMPREF1078_RS06610 0.59 -1.3 711,797 + HMPREF1078_RS06610 0.68 -1.9 711,801 + HMPREF1078_RS06610 0.69 -0.0 711,814 - HMPREF1078_RS06610 0.71 -0.1 711,833 - HMPREF1078_RS06610 0.73 +1.1 711,915 + HMPREF1078_RS06610 0.85 +0.9 711,921 + HMPREF1078_RS06610 0.86 -1.2 711,930 + HMPREF1078_RS06610 0.87 -2.1 711,967 - +0.4 711,967 - -2.5 711,969 - +0.1 711,969 - +0.1 711,993 + -0.2 711,995 + +0.5 711,995 + -0.8 712,012 + -0.2 712,013 - +0.1 712,022 + +0.5 712,023 - +0.8 712,027 + -0.2 712,027 + +1.0 712,027 + -1.5 712,028 - -0.3 712,028 - -2.3 712,028 - -2.0 712,028 - +0.8 712,028 - +1.2 712,029 + +0.0 712,059 + +0.1 712,075 + +0.7 712,284 + HMPREF1078_RS06615 0.30 -1.1 712,323 + HMPREF1078_RS06615 0.40 -0.8 712,323 + HMPREF1078_RS06615 0.40 -0.3 712,363 - HMPREF1078_RS06615 0.49 -1.7 712,387 - HMPREF1078_RS06615 0.55 -1.2 712,398 + HMPREF1078_RS06615 0.58 -2.2 712,436 - HMPREF1078_RS06615 0.67 -0.6 712,436 - HMPREF1078_RS06615 0.67 -0.8 712,539 + -0.2 712,636 - HMPREF1078_RS06620 0.11 -2.0 712,636 - HMPREF1078_RS06620 0.11 +0.3 712,636 - HMPREF1078_RS06620 0.11 +0.3 712,636 - HMPREF1078_RS06620 0.11 +0.3 712,636 - HMPREF1078_RS06620 0.11 -0.3 712,636 - HMPREF1078_RS06620 0.11 +0.2 712,681 + HMPREF1078_RS06620 0.23 +0.4 712,681 + HMPREF1078_RS06620 0.23 +1.8 712,717 - HMPREF1078_RS06620 0.32 -0.8 712,748 - HMPREF1078_RS06620 0.40 -0.5 712,748 - HMPREF1078_RS06620 0.40 +0.4 712,773 + HMPREF1078_RS06620 0.47 +1.1 712,887 + HMPREF1078_RS06620 0.77 -0.0 712,992 + +0.3 712,992 + +2.1 713,030 + -1.1 713,031 - -1.0 713,031 - +0.7 713,115 - -0.4 713,163 - HMPREF1078_RS06625 0.13 +1.0 713,237 + HMPREF1078_RS06625 0.19 -0.1 713,379 + HMPREF1078_RS06625 0.29 -0.9 713,379 + HMPREF1078_RS06625 0.29 -0.2 713,379 + HMPREF1078_RS06625 0.29 +0.2 713,425 + HMPREF1078_RS06625 0.33 -0.3 713,425 + HMPREF1078_RS06625 0.33 +1.1 713,487 - HMPREF1078_RS06625 0.37 -2.2
Or see this region's nucleotide sequence