Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06585 and HMPREF1078_RS06590 are separated by 218 nucleotides HMPREF1078_RS06590 and HMPREF1078_RS06595 are separated by 114 nucleotides
HMPREF1078_RS06585: HMPREF1078_RS06585 - T9SS type A sorting domain-containing protein, at 704,755 to 705,288
_RS06585
HMPREF1078_RS06590: HMPREF1078_RS06590 - sulfatase, at 705,507 to 707,051
_RS06590
HMPREF1078_RS06595: HMPREF1078_RS06595 - DUF362 domain-containing protein, at 707,166 to 708,200
_RS06595
Position (kb) 705
706
707
708 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 704.560 kb on - strand at 704.637 kb on + strand at 704.637 kb on + strand at 704.759 kb on + strand at 704.759 kb on + strand at 704.759 kb on + strand at 704.760 kb on - strand at 704.760 kb on - strand at 704.760 kb on - strand at 704.787 kb on + strand at 704.926 kb on - strand, within HMPREF1078_RS06585 at 704.975 kb on + strand, within HMPREF1078_RS06585 at 705.000 kb on + strand, within HMPREF1078_RS06585 at 705.000 kb on + strand, within HMPREF1078_RS06585 at 705.012 kb on + strand, within HMPREF1078_RS06585 at 705.013 kb on - strand, within HMPREF1078_RS06585 at 705.050 kb on + strand, within HMPREF1078_RS06585 at 705.114 kb on + strand, within HMPREF1078_RS06585 at 705.114 kb on + strand, within HMPREF1078_RS06585 at 705.115 kb on - strand, within HMPREF1078_RS06585 at 705.115 kb on - strand, within HMPREF1078_RS06585 at 705.119 kb on - strand, within HMPREF1078_RS06585 at 705.189 kb on + strand, within HMPREF1078_RS06585 at 705.195 kb on + strand, within HMPREF1078_RS06585 at 705.196 kb on - strand, within HMPREF1078_RS06585 at 705.196 kb on - strand, within HMPREF1078_RS06585 at 705.196 kb on - strand, within HMPREF1078_RS06585 at 705.196 kb on - strand, within HMPREF1078_RS06585 at 705.199 kb on + strand, within HMPREF1078_RS06585 at 705.200 kb on - strand, within HMPREF1078_RS06585 at 705.200 kb on - strand, within HMPREF1078_RS06585 at 705.229 kb on + strand, within HMPREF1078_RS06585 at 705.229 kb on + strand, within HMPREF1078_RS06585 at 705.229 kb on + strand, within HMPREF1078_RS06585 at 705.259 kb on - strand at 705.267 kb on + strand at 705.267 kb on + strand at 705.275 kb on + strand at 705.275 kb on + strand at 705.276 kb on - strand at 705.276 kb on - strand at 705.282 kb on - strand at 705.286 kb on + strand at 705.287 kb on - strand at 705.293 kb on + strand at 705.294 kb on - strand at 705.297 kb on + strand at 705.383 kb on - strand at 705.441 kb on - strand at 705.449 kb on - strand at 705.464 kb on - strand at 705.481 kb on + strand at 705.482 kb on - strand at 705.482 kb on - strand at 705.482 kb on - strand at 705.484 kb on - strand at 705.484 kb on - strand at 705.485 kb on + strand at 705.485 kb on + strand at 705.485 kb on + strand at 705.485 kb on + strand at 705.486 kb on - strand at 705.486 kb on - strand at 705.486 kb on - strand at 705.486 kb on - strand at 705.503 kb on + strand at 705.504 kb on - strand at 705.508 kb on + strand at 705.509 kb on - strand at 705.574 kb on - strand at 705.785 kb on + strand, within HMPREF1078_RS06590 at 705.925 kb on - strand, within HMPREF1078_RS06590 at 705.934 kb on + strand, within HMPREF1078_RS06590 at 705.934 kb on + strand, within HMPREF1078_RS06590 at 706.080 kb on - strand, within HMPREF1078_RS06590 at 706.121 kb on + strand, within HMPREF1078_RS06590 at 706.121 kb on + strand, within HMPREF1078_RS06590 at 706.122 kb on - strand, within HMPREF1078_RS06590 at 706.246 kb on + strand, within HMPREF1078_RS06590 at 706.263 kb on - strand, within HMPREF1078_RS06590 at 706.263 kb on - strand, within HMPREF1078_RS06590 at 706.263 kb on - strand, within HMPREF1078_RS06590 at 706.274 kb on + strand, within HMPREF1078_RS06590 at 706.275 kb on - strand, within HMPREF1078_RS06590 at 706.275 kb on - strand, within HMPREF1078_RS06590 at 706.275 kb on - strand, within HMPREF1078_RS06590 at 706.297 kb on + strand, within HMPREF1078_RS06590 at 706.445 kb on + strand, within HMPREF1078_RS06590 at 706.453 kb on + strand, within HMPREF1078_RS06590 at 706.454 kb on - strand, within HMPREF1078_RS06590 at 706.638 kb on - strand, within HMPREF1078_RS06590 at 706.673 kb on - strand, within HMPREF1078_RS06590 at 706.687 kb on - strand, within HMPREF1078_RS06590 at 706.816 kb on + strand, within HMPREF1078_RS06590 at 707.022 kb on + strand at 707.072 kb on + strand at 707.073 kb on - strand at 707.074 kb on + strand at 707.074 kb on + strand at 707.074 kb on + strand at 707.074 kb on + strand at 707.095 kb on + strand at 707.095 kb on + strand at 707.095 kb on + strand at 707.096 kb on - strand at 707.106 kb on + strand at 707.106 kb on + strand at 707.107 kb on - strand at 707.107 kb on - strand at 707.107 kb on - strand at 707.107 kb on - strand at 707.110 kb on + strand at 707.110 kb on + strand at 707.111 kb on - strand at 707.111 kb on - strand at 707.167 kb on + strand at 707.168 kb on - strand at 707.175 kb on + strand at 707.175 kb on + strand at 707.175 kb on + strand at 707.175 kb on + strand at 707.176 kb on - strand at 707.176 kb on - strand at 707.178 kb on + strand at 707.191 kb on + strand at 707.276 kb on + strand, within HMPREF1078_RS06595 at 707.308 kb on + strand, within HMPREF1078_RS06595 at 707.308 kb on + strand, within HMPREF1078_RS06595 at 707.309 kb on - strand, within HMPREF1078_RS06595 at 707.309 kb on - strand, within HMPREF1078_RS06595 at 707.313 kb on + strand, within HMPREF1078_RS06595 at 707.340 kb on + strand, within HMPREF1078_RS06595 at 707.433 kb on + strand, within HMPREF1078_RS06595 at 707.442 kb on - strand, within HMPREF1078_RS06595 at 707.465 kb on - strand, within HMPREF1078_RS06595 at 707.472 kb on + strand, within HMPREF1078_RS06595 at 707.568 kb on - strand, within HMPREF1078_RS06595 at 707.622 kb on + strand, within HMPREF1078_RS06595 at 707.711 kb on + strand, within HMPREF1078_RS06595 at 707.712 kb on - strand, within HMPREF1078_RS06595 at 707.713 kb on + strand, within HMPREF1078_RS06595 at 707.713 kb on + strand, within HMPREF1078_RS06595 at 707.713 kb on + strand, within HMPREF1078_RS06595 at 707.713 kb on + strand, within HMPREF1078_RS06595 at 707.713 kb on + strand, within HMPREF1078_RS06595 at 707.714 kb on - strand, within HMPREF1078_RS06595 at 707.729 kb on + strand, within HMPREF1078_RS06595 at 707.784 kb on + strand, within HMPREF1078_RS06595 at 707.784 kb on + strand, within HMPREF1078_RS06595 at 707.819 kb on + strand, within HMPREF1078_RS06595 at 707.872 kb on - strand, within HMPREF1078_RS06595 at 707.884 kb on - strand, within HMPREF1078_RS06595 at 707.899 kb on - strand, within HMPREF1078_RS06595
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 704,560 - +0.5 704,637 + +0.0 704,637 + -1.2 704,759 + +0.0 704,759 + -1.1 704,759 + +0.6 704,760 - +1.8 704,760 - +0.1 704,760 - +0.7 704,787 + -0.1 704,926 - HMPREF1078_RS06585 0.32 +0.9 704,975 + HMPREF1078_RS06585 0.41 +0.3 705,000 + HMPREF1078_RS06585 0.46 +1.4 705,000 + HMPREF1078_RS06585 0.46 -0.3 705,012 + HMPREF1078_RS06585 0.48 -1.7 705,013 - HMPREF1078_RS06585 0.48 -0.3 705,050 + HMPREF1078_RS06585 0.55 -0.5 705,114 + HMPREF1078_RS06585 0.67 -1.3 705,114 + HMPREF1078_RS06585 0.67 +0.1 705,115 - HMPREF1078_RS06585 0.67 +1.3 705,115 - HMPREF1078_RS06585 0.67 +0.4 705,119 - HMPREF1078_RS06585 0.68 +0.3 705,189 + HMPREF1078_RS06585 0.81 +0.5 705,195 + HMPREF1078_RS06585 0.82 +0.2 705,196 - HMPREF1078_RS06585 0.83 +1.0 705,196 - HMPREF1078_RS06585 0.83 +0.8 705,196 - HMPREF1078_RS06585 0.83 -0.7 705,196 - HMPREF1078_RS06585 0.83 +0.9 705,199 + HMPREF1078_RS06585 0.83 +0.0 705,200 - HMPREF1078_RS06585 0.83 -0.6 705,200 - HMPREF1078_RS06585 0.83 -2.2 705,229 + HMPREF1078_RS06585 0.89 +0.8 705,229 + HMPREF1078_RS06585 0.89 -0.1 705,229 + HMPREF1078_RS06585 0.89 +0.1 705,259 - -0.6 705,267 + -0.8 705,267 + +0.4 705,275 + -1.0 705,275 + +0.1 705,276 - +0.2 705,276 - -3.7 705,282 - +1.1 705,286 + +0.9 705,287 - -1.6 705,293 + -0.5 705,294 - -0.3 705,297 + +1.0 705,383 - -2.1 705,441 - +0.1 705,449 - -1.8 705,464 - -3.4 705,481 + -1.5 705,482 - -2.0 705,482 - +0.4 705,482 - -0.3 705,484 - -0.5 705,484 - -0.2 705,485 + +1.3 705,485 + +0.5 705,485 + -2.0 705,485 + -1.2 705,486 - +0.4 705,486 - +0.4 705,486 - -0.1 705,486 - +0.5 705,503 + -0.8 705,504 - -0.1 705,508 + +0.3 705,509 - -0.7 705,574 - +0.4 705,785 + HMPREF1078_RS06590 0.18 +0.6 705,925 - HMPREF1078_RS06590 0.27 -1.6 705,934 + HMPREF1078_RS06590 0.28 -0.3 705,934 + HMPREF1078_RS06590 0.28 +1.2 706,080 - HMPREF1078_RS06590 0.37 +0.3 706,121 + HMPREF1078_RS06590 0.40 +0.7 706,121 + HMPREF1078_RS06590 0.40 +0.7 706,122 - HMPREF1078_RS06590 0.40 -0.2 706,246 + HMPREF1078_RS06590 0.48 -1.3 706,263 - HMPREF1078_RS06590 0.49 +2.7 706,263 - HMPREF1078_RS06590 0.49 -1.5 706,263 - HMPREF1078_RS06590 0.49 -1.9 706,274 + HMPREF1078_RS06590 0.50 +0.9 706,275 - HMPREF1078_RS06590 0.50 +0.5 706,275 - HMPREF1078_RS06590 0.50 -0.1 706,275 - HMPREF1078_RS06590 0.50 -0.3 706,297 + HMPREF1078_RS06590 0.51 -0.5 706,445 + HMPREF1078_RS06590 0.61 -0.8 706,453 + HMPREF1078_RS06590 0.61 +0.7 706,454 - HMPREF1078_RS06590 0.61 +0.0 706,638 - HMPREF1078_RS06590 0.73 +0.7 706,673 - HMPREF1078_RS06590 0.75 -0.1 706,687 - HMPREF1078_RS06590 0.76 +0.4 706,816 + HMPREF1078_RS06590 0.85 -0.1 707,022 + -0.2 707,072 + -0.9 707,073 - +0.7 707,074 + -1.5 707,074 + +0.0 707,074 + -0.9 707,074 + +0.3 707,095 + +0.2 707,095 + -1.7 707,095 + +1.6 707,096 - -0.8 707,106 + +1.5 707,106 + -1.5 707,107 - +0.3 707,107 - -0.7 707,107 - +0.1 707,107 - +0.9 707,110 + -1.1 707,110 + -1.2 707,111 - +2.3 707,111 - -0.2 707,167 + -3.1 707,168 - +0.9 707,175 + +0.6 707,175 + -0.2 707,175 + +0.4 707,175 + +0.1 707,176 - -1.2 707,176 - -0.6 707,178 + -1.9 707,191 + +0.7 707,276 + HMPREF1078_RS06595 0.11 -1.2 707,308 + HMPREF1078_RS06595 0.14 +0.9 707,308 + HMPREF1078_RS06595 0.14 -2.0 707,309 - HMPREF1078_RS06595 0.14 +0.0 707,309 - HMPREF1078_RS06595 0.14 -0.5 707,313 + HMPREF1078_RS06595 0.14 +0.8 707,340 + HMPREF1078_RS06595 0.17 +0.8 707,433 + HMPREF1078_RS06595 0.26 -0.5 707,442 - HMPREF1078_RS06595 0.27 -0.1 707,465 - HMPREF1078_RS06595 0.29 -0.6 707,472 + HMPREF1078_RS06595 0.30 -0.4 707,568 - HMPREF1078_RS06595 0.39 -0.2 707,622 + HMPREF1078_RS06595 0.44 -0.9 707,711 + HMPREF1078_RS06595 0.53 +0.1 707,712 - HMPREF1078_RS06595 0.53 -1.0 707,713 + HMPREF1078_RS06595 0.53 -1.0 707,713 + HMPREF1078_RS06595 0.53 -0.3 707,713 + HMPREF1078_RS06595 0.53 +0.1 707,713 + HMPREF1078_RS06595 0.53 -0.8 707,713 + HMPREF1078_RS06595 0.53 -0.1 707,714 - HMPREF1078_RS06595 0.53 +2.7 707,729 + HMPREF1078_RS06595 0.54 +4.0 707,784 + HMPREF1078_RS06595 0.60 +0.8 707,784 + HMPREF1078_RS06595 0.60 +0.2 707,819 + HMPREF1078_RS06595 0.63 -1.1 707,872 - HMPREF1078_RS06595 0.68 +1.0 707,884 - HMPREF1078_RS06595 0.69 +1.9 707,899 - HMPREF1078_RS06595 0.71 +0.0
Or see this region's nucleotide sequence