Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06410 and HMPREF1078_RS06415 overlap by 11 nucleotides HMPREF1078_RS06415 and HMPREF1078_RS06420 overlap by 11 nucleotides HMPREF1078_RS06420 and HMPREF1078_RS06425 are separated by 4 nucleotides HMPREF1078_RS06425 and HMPREF1078_RS06430 are separated by 414 nucleotides
HMPREF1078_RS06410: HMPREF1078_RS06410 - DUF4252 domain-containing protein, at 648,473 to 648,925
_RS06410
HMPREF1078_RS06415: HMPREF1078_RS06415 - RNA polymerase sigma factor, at 648,915 to 649,433
_RS06415
HMPREF1078_RS06420: HMPREF1078_RS06420 - hypothetical protein, at 649,423 to 649,824
_RS06420
HMPREF1078_RS06425: HMPREF1078_RS06425 - DUF4252 domain-containing protein, at 649,829 to 650,323
_RS06425
HMPREF1078_RS06430: HMPREF1078_RS06430 - TonB-dependent receptor, at 650,738 to 653,848
_RS06430
Position (kb) 649
650
651 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 648.933 kb on - strand at 649.013 kb on + strand, within HMPREF1078_RS06415 at 649.029 kb on + strand, within HMPREF1078_RS06415 at 649.029 kb on + strand, within HMPREF1078_RS06415 at 649.034 kb on + strand, within HMPREF1078_RS06415 at 649.035 kb on - strand, within HMPREF1078_RS06415 at 649.039 kb on + strand, within HMPREF1078_RS06415 at 649.211 kb on - strand, within HMPREF1078_RS06415 at 649.321 kb on + strand, within HMPREF1078_RS06415 at 649.322 kb on - strand, within HMPREF1078_RS06415 at 649.322 kb on - strand, within HMPREF1078_RS06415 at 649.408 kb on - strand at 649.408 kb on - strand at 649.410 kb on + strand at 649.412 kb on + strand at 649.412 kb on + strand at 649.412 kb on + strand at 649.413 kb on - strand at 649.416 kb on + strand at 649.416 kb on + strand at 649.416 kb on + strand at 649.416 kb on + strand at 649.416 kb on + strand at 649.416 kb on + strand at 649.416 kb on + strand at 649.416 kb on + strand at 649.417 kb on - strand at 649.417 kb on - strand at 649.417 kb on - strand at 649.417 kb on - strand at 649.417 kb on - strand at 649.417 kb on - strand at 649.417 kb on - strand at 649.417 kb on - strand at 649.417 kb on - strand at 649.422 kb on + strand at 649.422 kb on + strand at 649.432 kb on - strand at 649.432 kb on - strand at 649.439 kb on + strand at 649.440 kb on - strand at 649.440 kb on - strand at 649.440 kb on - strand at 649.440 kb on - strand at 649.455 kb on + strand at 649.455 kb on + strand at 649.586 kb on + strand, within HMPREF1078_RS06420 at 649.586 kb on + strand, within HMPREF1078_RS06420 at 649.586 kb on + strand, within HMPREF1078_RS06420 at 649.587 kb on - strand, within HMPREF1078_RS06420 at 649.587 kb on - strand, within HMPREF1078_RS06420 at 649.633 kb on + strand, within HMPREF1078_RS06420 at 649.675 kb on + strand, within HMPREF1078_RS06420 at 649.675 kb on + strand, within HMPREF1078_RS06420 at 649.675 kb on + strand, within HMPREF1078_RS06420 at 649.675 kb on + strand, within HMPREF1078_RS06420 at 649.675 kb on + strand, within HMPREF1078_RS06420 at 649.675 kb on + strand, within HMPREF1078_RS06420 at 649.676 kb on - strand, within HMPREF1078_RS06420 at 649.676 kb on - strand, within HMPREF1078_RS06420 at 649.676 kb on - strand, within HMPREF1078_RS06420 at 649.718 kb on + strand, within HMPREF1078_RS06420 at 649.718 kb on + strand, within HMPREF1078_RS06420 at 649.781 kb on + strand, within HMPREF1078_RS06420 at 649.785 kb on + strand at 649.786 kb on - strand at 649.786 kb on - strand at 649.790 kb on + strand at 649.790 kb on + strand at 649.790 kb on + strand at 649.791 kb on - strand at 649.814 kb on + strand at 649.822 kb on + strand at 649.836 kb on + strand at 649.837 kb on - strand at 649.844 kb on - strand at 649.844 kb on - strand at 649.844 kb on - strand at 649.845 kb on + strand at 649.845 kb on + strand at 649.846 kb on - strand at 649.846 kb on - strand at 649.910 kb on + strand, within HMPREF1078_RS06425 at 649.924 kb on + strand, within HMPREF1078_RS06425 at 649.925 kb on - strand, within HMPREF1078_RS06425 at 649.929 kb on + strand, within HMPREF1078_RS06425 at 649.929 kb on + strand, within HMPREF1078_RS06425 at 649.929 kb on + strand, within HMPREF1078_RS06425 at 649.929 kb on + strand, within HMPREF1078_RS06425 at 649.929 kb on + strand, within HMPREF1078_RS06425 at 649.929 kb on + strand, within HMPREF1078_RS06425 at 649.929 kb on + strand, within HMPREF1078_RS06425 at 649.930 kb on - strand, within HMPREF1078_RS06425 at 649.930 kb on - strand, within HMPREF1078_RS06425 at 649.930 kb on - strand, within HMPREF1078_RS06425 at 649.930 kb on - strand, within HMPREF1078_RS06425 at 649.930 kb on - strand, within HMPREF1078_RS06425 at 649.930 kb on - strand, within HMPREF1078_RS06425 at 649.972 kb on + strand, within HMPREF1078_RS06425 at 649.977 kb on + strand, within HMPREF1078_RS06425 at 650.137 kb on + strand, within HMPREF1078_RS06425 at 650.138 kb on - strand, within HMPREF1078_RS06425 at 650.138 kb on - strand, within HMPREF1078_RS06425 at 650.154 kb on - strand, within HMPREF1078_RS06425 at 650.175 kb on + strand, within HMPREF1078_RS06425 at 650.175 kb on + strand, within HMPREF1078_RS06425 at 650.175 kb on + strand, within HMPREF1078_RS06425 at 650.176 kb on - strand, within HMPREF1078_RS06425 at 650.176 kb on - strand, within HMPREF1078_RS06425 at 650.216 kb on + strand, within HMPREF1078_RS06425 at 650.217 kb on - strand, within HMPREF1078_RS06425 at 650.217 kb on - strand, within HMPREF1078_RS06425 at 650.257 kb on + strand, within HMPREF1078_RS06425 at 650.258 kb on - strand, within HMPREF1078_RS06425 at 650.259 kb on + strand, within HMPREF1078_RS06425 at 650.259 kb on + strand, within HMPREF1078_RS06425 at 650.259 kb on + strand, within HMPREF1078_RS06425 at 650.294 kb on - strand at 650.305 kb on - strand at 650.305 kb on - strand at 650.316 kb on - strand at 650.321 kb on + strand at 650.337 kb on + strand at 650.342 kb on - strand at 650.358 kb on + strand at 650.392 kb on + strand at 650.393 kb on - strand at 650.398 kb on + strand at 650.432 kb on + strand at 650.437 kb on - strand at 650.437 kb on - strand at 650.440 kb on + strand at 650.441 kb on - strand at 650.441 kb on - strand at 650.471 kb on + strand at 650.506 kb on + strand at 650.600 kb on + strand at 650.600 kb on + strand at 650.600 kb on + strand at 650.601 kb on - strand at 650.601 kb on - strand at 650.602 kb on + strand at 650.603 kb on - strand at 650.609 kb on + strand at 650.642 kb on - strand at 650.649 kb on + strand at 650.666 kb on + strand at 650.671 kb on - strand at 650.707 kb on + strand at 650.732 kb on - strand at 650.753 kb on + strand at 650.764 kb on - strand at 650.781 kb on + strand at 650.781 kb on + strand at 650.781 kb on + strand at 650.785 kb on - strand at 650.796 kb on + strand at 650.851 kb on + strand at 650.852 kb on - strand at 650.853 kb on + strand at 650.853 kb on + strand at 650.908 kb on + strand at 650.908 kb on + strand at 650.908 kb on + strand at 650.909 kb on - strand at 650.909 kb on - strand at 650.909 kb on - strand at 650.909 kb on - strand at 650.956 kb on + strand at 651.003 kb on + strand at 651.067 kb on - strand, within HMPREF1078_RS06430 at 651.091 kb on - strand, within HMPREF1078_RS06430 at 651.122 kb on + strand, within HMPREF1078_RS06430 at 651.123 kb on - strand, within HMPREF1078_RS06430 at 651.183 kb on + strand, within HMPREF1078_RS06430 at 651.241 kb on - strand, within HMPREF1078_RS06430 at 651.241 kb on - strand, within HMPREF1078_RS06430 at 651.256 kb on + strand, within HMPREF1078_RS06430 at 651.257 kb on - strand, within HMPREF1078_RS06430 at 651.308 kb on - strand, within HMPREF1078_RS06430 at 651.320 kb on - strand, within HMPREF1078_RS06430
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 648,933 - -0.7 649,013 + HMPREF1078_RS06415 0.19 -1.0 649,029 + HMPREF1078_RS06415 0.22 -0.8 649,029 + HMPREF1078_RS06415 0.22 -1.7 649,034 + HMPREF1078_RS06415 0.23 -3.2 649,035 - HMPREF1078_RS06415 0.23 +0.2 649,039 + HMPREF1078_RS06415 0.24 -0.2 649,211 - HMPREF1078_RS06415 0.57 +0.7 649,321 + HMPREF1078_RS06415 0.78 +0.4 649,322 - HMPREF1078_RS06415 0.78 -1.2 649,322 - HMPREF1078_RS06415 0.78 -0.2 649,408 - -0.7 649,408 - -2.8 649,410 + -0.8 649,412 + +0.2 649,412 + -2.2 649,412 + -0.6 649,413 - -0.5 649,416 + -3.3 649,416 + -3.9 649,416 + -3.8 649,416 + -2.5 649,416 + +2.1 649,416 + -2.1 649,416 + -0.2 649,416 + -2.5 649,417 - -2.9 649,417 - -2.8 649,417 - -1.5 649,417 - -1.4 649,417 - -3.3 649,417 - -2.6 649,417 - +1.2 649,417 - -2.4 649,417 - -0.9 649,422 + -2.2 649,422 + -2.2 649,432 - -1.5 649,432 - -2.4 649,439 + -2.2 649,440 - -2.1 649,440 - -0.0 649,440 - -2.9 649,440 - -2.6 649,455 + -2.2 649,455 + -1.7 649,586 + HMPREF1078_RS06420 0.41 +0.4 649,586 + HMPREF1078_RS06420 0.41 +1.8 649,586 + HMPREF1078_RS06420 0.41 -1.7 649,587 - HMPREF1078_RS06420 0.41 -2.1 649,587 - HMPREF1078_RS06420 0.41 -2.2 649,633 + HMPREF1078_RS06420 0.52 -1.4 649,675 + HMPREF1078_RS06420 0.63 -3.0 649,675 + HMPREF1078_RS06420 0.63 -2.0 649,675 + HMPREF1078_RS06420 0.63 -0.3 649,675 + HMPREF1078_RS06420 0.63 +0.1 649,675 + HMPREF1078_RS06420 0.63 +0.3 649,675 + HMPREF1078_RS06420 0.63 -1.1 649,676 - HMPREF1078_RS06420 0.63 -0.7 649,676 - HMPREF1078_RS06420 0.63 -0.0 649,676 - HMPREF1078_RS06420 0.63 -1.6 649,718 + HMPREF1078_RS06420 0.73 -3.5 649,718 + HMPREF1078_RS06420 0.73 -3.3 649,781 + HMPREF1078_RS06420 0.89 -3.9 649,785 + -2.7 649,786 - -0.8 649,786 - -0.8 649,790 + -2.2 649,790 + -3.0 649,790 + -1.0 649,791 - -0.0 649,814 + -3.3 649,822 + -4.4 649,836 + -2.8 649,837 - -3.6 649,844 - -2.8 649,844 - -0.4 649,844 - -0.4 649,845 + -3.1 649,845 + -3.1 649,846 - -2.2 649,846 - -3.3 649,910 + HMPREF1078_RS06425 0.16 -2.0 649,924 + HMPREF1078_RS06425 0.19 -1.2 649,925 - HMPREF1078_RS06425 0.19 -1.0 649,929 + HMPREF1078_RS06425 0.20 -0.5 649,929 + HMPREF1078_RS06425 0.20 -2.0 649,929 + HMPREF1078_RS06425 0.20 -0.5 649,929 + HMPREF1078_RS06425 0.20 -2.9 649,929 + HMPREF1078_RS06425 0.20 -2.3 649,929 + HMPREF1078_RS06425 0.20 -1.1 649,929 + HMPREF1078_RS06425 0.20 -2.2 649,930 - HMPREF1078_RS06425 0.20 -0.0 649,930 - HMPREF1078_RS06425 0.20 +1.2 649,930 - HMPREF1078_RS06425 0.20 -2.6 649,930 - HMPREF1078_RS06425 0.20 +1.2 649,930 - HMPREF1078_RS06425 0.20 -0.9 649,930 - HMPREF1078_RS06425 0.20 -3.2 649,972 + HMPREF1078_RS06425 0.29 -2.3 649,977 + HMPREF1078_RS06425 0.30 +0.2 650,137 + HMPREF1078_RS06425 0.62 +0.7 650,138 - HMPREF1078_RS06425 0.62 -1.7 650,138 - HMPREF1078_RS06425 0.62 -1.2 650,154 - HMPREF1078_RS06425 0.66 -1.8 650,175 + HMPREF1078_RS06425 0.70 -2.7 650,175 + HMPREF1078_RS06425 0.70 -3.5 650,175 + HMPREF1078_RS06425 0.70 -1.8 650,176 - HMPREF1078_RS06425 0.70 -1.0 650,176 - HMPREF1078_RS06425 0.70 -1.2 650,216 + HMPREF1078_RS06425 0.78 -2.8 650,217 - HMPREF1078_RS06425 0.78 -2.3 650,217 - HMPREF1078_RS06425 0.78 -1.8 650,257 + HMPREF1078_RS06425 0.86 -2.3 650,258 - HMPREF1078_RS06425 0.87 -1.8 650,259 + HMPREF1078_RS06425 0.87 -1.6 650,259 + HMPREF1078_RS06425 0.87 +1.0 650,259 + HMPREF1078_RS06425 0.87 -1.0 650,294 - -3.7 650,305 - -1.3 650,305 - -2.2 650,316 - -3.7 650,321 + +1.8 650,337 + +1.2 650,342 - -0.2 650,358 + -0.3 650,392 + +0.5 650,393 - +0.4 650,398 + +0.2 650,432 + -1.7 650,437 - +0.4 650,437 - +0.8 650,440 + -2.0 650,441 - +0.7 650,441 - -1.7 650,471 + -0.0 650,506 + +0.1 650,600 + +2.1 650,600 + +2.8 650,600 + +0.0 650,601 - +3.9 650,601 - -0.4 650,602 + +0.5 650,603 - -3.0 650,609 + +0.9 650,642 - +0.9 650,649 + +0.3 650,666 + +0.4 650,671 - -0.4 650,707 + +0.9 650,732 - +0.6 650,753 + +0.6 650,764 - +0.2 650,781 + -1.6 650,781 + +1.1 650,781 + +0.5 650,785 - +0.1 650,796 + -0.2 650,851 + -0.1 650,852 - -1.2 650,853 + -1.3 650,853 + +1.2 650,908 + -1.4 650,908 + -0.6 650,908 + +0.4 650,909 - +0.5 650,909 - +0.5 650,909 - +1.5 650,909 - +0.2 650,956 + +1.0 651,003 + -1.0 651,067 - HMPREF1078_RS06430 0.11 -1.9 651,091 - HMPREF1078_RS06430 0.11 -0.9 651,122 + HMPREF1078_RS06430 0.12 -1.2 651,123 - HMPREF1078_RS06430 0.12 -0.4 651,183 + HMPREF1078_RS06430 0.14 -0.6 651,241 - HMPREF1078_RS06430 0.16 -0.6 651,241 - HMPREF1078_RS06430 0.16 -0.8 651,256 + HMPREF1078_RS06430 0.17 +1.1 651,257 - HMPREF1078_RS06430 0.17 +1.1 651,308 - HMPREF1078_RS06430 0.18 -0.2 651,320 - HMPREF1078_RS06430 0.19 +0.5
Or see this region's nucleotide sequence