Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06105 and HMPREF1078_RS06110 are separated by 149 nucleotides HMPREF1078_RS06110 and HMPREF1078_RS06115 are separated by 5 nucleotides
HMPREF1078_RS06105: HMPREF1078_RS06105 - alpha-L-fucosidase, at 567,876 to 570,017
_RS06105
HMPREF1078_RS06110: HMPREF1078_RS06110 - beta-galactosidase, at 570,167 to 572,509
_RS06110
HMPREF1078_RS06115: HMPREF1078_RS06115 - hypothetical protein, at 572,515 to 574,800
_RS06115
Position (kb) 570
571
572
573 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 569.353 kb on + strand, within HMPREF1078_RS06105 at 569.553 kb on + strand, within HMPREF1078_RS06105 at 569.556 kb on + strand, within HMPREF1078_RS06105 at 569.670 kb on - strand, within HMPREF1078_RS06105 at 569.670 kb on - strand, within HMPREF1078_RS06105 at 569.943 kb on + strand at 570.035 kb on + strand at 570.035 kb on + strand at 570.035 kb on + strand at 570.038 kb on - strand at 570.046 kb on + strand at 570.051 kb on + strand at 570.061 kb on + strand at 570.062 kb on - strand at 570.062 kb on - strand at 570.091 kb on + strand at 570.091 kb on + strand at 570.091 kb on + strand at 570.092 kb on - strand at 570.092 kb on - strand at 570.168 kb on + strand at 570.195 kb on + strand at 570.195 kb on + strand at 570.196 kb on - strand at 570.203 kb on - strand at 570.203 kb on - strand at 570.307 kb on - strand at 570.334 kb on - strand at 570.337 kb on + strand at 570.338 kb on - strand at 570.338 kb on - strand at 570.405 kb on + strand, within HMPREF1078_RS06110 at 570.406 kb on - strand, within HMPREF1078_RS06110 at 570.717 kb on - strand, within HMPREF1078_RS06110 at 570.772 kb on + strand, within HMPREF1078_RS06110 at 571.408 kb on - strand, within HMPREF1078_RS06110 at 571.476 kb on + strand, within HMPREF1078_RS06110 at 571.476 kb on + strand, within HMPREF1078_RS06110 at 571.606 kb on - strand, within HMPREF1078_RS06110 at 571.621 kb on + strand, within HMPREF1078_RS06110 at 571.621 kb on + strand, within HMPREF1078_RS06110 at 571.621 kb on + strand, within HMPREF1078_RS06110 at 571.622 kb on - strand, within HMPREF1078_RS06110 at 571.783 kb on + strand, within HMPREF1078_RS06110 at 571.843 kb on + strand, within HMPREF1078_RS06110 at 571.843 kb on + strand, within HMPREF1078_RS06110 at 571.918 kb on + strand, within HMPREF1078_RS06110 at 571.920 kb on + strand, within HMPREF1078_RS06110 at 571.920 kb on + strand, within HMPREF1078_RS06110 at 571.921 kb on - strand, within HMPREF1078_RS06110 at 571.921 kb on - strand, within HMPREF1078_RS06110 at 571.938 kb on + strand, within HMPREF1078_RS06110 at 571.938 kb on + strand, within HMPREF1078_RS06110 at 571.938 kb on + strand, within HMPREF1078_RS06110 at 571.938 kb on + strand, within HMPREF1078_RS06110 at 571.939 kb on - strand, within HMPREF1078_RS06110 at 571.939 kb on - strand, within HMPREF1078_RS06110 at 571.939 kb on - strand, within HMPREF1078_RS06110 at 571.939 kb on - strand, within HMPREF1078_RS06110 at 571.964 kb on + strand, within HMPREF1078_RS06110 at 571.964 kb on + strand, within HMPREF1078_RS06110 at 571.965 kb on - strand, within HMPREF1078_RS06110 at 571.975 kb on + strand, within HMPREF1078_RS06110 at 571.975 kb on + strand, within HMPREF1078_RS06110 at 572.163 kb on + strand, within HMPREF1078_RS06110 at 572.163 kb on + strand, within HMPREF1078_RS06110 at 572.164 kb on - strand, within HMPREF1078_RS06110 at 572.164 kb on - strand, within HMPREF1078_RS06110 at 572.164 kb on - strand, within HMPREF1078_RS06110 at 572.265 kb on + strand, within HMPREF1078_RS06110 at 572.269 kb on + strand, within HMPREF1078_RS06110 at 572.269 kb on + strand, within HMPREF1078_RS06110 at 572.270 kb on - strand, within HMPREF1078_RS06110 at 572.335 kb on + strand at 572.343 kb on + strand at 572.344 kb on - strand at 572.344 kb on - strand at 572.498 kb on + strand at 572.516 kb on + strand at 572.522 kb on + strand at 572.523 kb on - strand at 572.528 kb on - strand at 572.870 kb on + strand, within HMPREF1078_RS06115 at 572.870 kb on + strand, within HMPREF1078_RS06115 at 573.016 kb on - strand, within HMPREF1078_RS06115 at 573.018 kb on - strand, within HMPREF1078_RS06115 at 573.055 kb on + strand, within HMPREF1078_RS06115 at 573.211 kb on + strand, within HMPREF1078_RS06115 at 573.332 kb on + strand, within HMPREF1078_RS06115 at 573.332 kb on + strand, within HMPREF1078_RS06115 at 573.409 kb on + strand, within HMPREF1078_RS06115
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 569,353 + HMPREF1078_RS06105 0.69 -0.2 569,553 + HMPREF1078_RS06105 0.78 +2.4 569,556 + HMPREF1078_RS06105 0.78 +1.0 569,670 - HMPREF1078_RS06105 0.84 +0.6 569,670 - HMPREF1078_RS06105 0.84 -0.2 569,943 + +1.2 570,035 + -2.3 570,035 + -0.9 570,035 + +0.5 570,038 - -0.6 570,046 + -0.3 570,051 + -0.1 570,061 + +1.8 570,062 - -0.1 570,062 - -0.1 570,091 + +1.4 570,091 + -1.1 570,091 + -0.7 570,092 - -0.8 570,092 - -2.6 570,168 + -0.1 570,195 + -0.4 570,195 + -1.6 570,196 - +0.1 570,203 - -0.6 570,203 - -0.5 570,307 - -1.4 570,334 - +0.6 570,337 + -1.9 570,338 - +0.8 570,338 - -2.1 570,405 + HMPREF1078_RS06110 0.10 +0.9 570,406 - HMPREF1078_RS06110 0.10 -3.1 570,717 - HMPREF1078_RS06110 0.23 -1.2 570,772 + HMPREF1078_RS06110 0.26 -0.6 571,408 - HMPREF1078_RS06110 0.53 -0.5 571,476 + HMPREF1078_RS06110 0.56 -0.8 571,476 + HMPREF1078_RS06110 0.56 +1.2 571,606 - HMPREF1078_RS06110 0.61 -0.9 571,621 + HMPREF1078_RS06110 0.62 +2.9 571,621 + HMPREF1078_RS06110 0.62 -0.7 571,621 + HMPREF1078_RS06110 0.62 +2.3 571,622 - HMPREF1078_RS06110 0.62 -0.0 571,783 + HMPREF1078_RS06110 0.69 +0.4 571,843 + HMPREF1078_RS06110 0.72 +0.0 571,843 + HMPREF1078_RS06110 0.72 -0.8 571,918 + HMPREF1078_RS06110 0.75 +0.8 571,920 + HMPREF1078_RS06110 0.75 -0.7 571,920 + HMPREF1078_RS06110 0.75 +0.0 571,921 - HMPREF1078_RS06110 0.75 +0.6 571,921 - HMPREF1078_RS06110 0.75 -0.0 571,938 + HMPREF1078_RS06110 0.76 -2.1 571,938 + HMPREF1078_RS06110 0.76 -1.2 571,938 + HMPREF1078_RS06110 0.76 -4.5 571,938 + HMPREF1078_RS06110 0.76 +3.3 571,939 - HMPREF1078_RS06110 0.76 -0.8 571,939 - HMPREF1078_RS06110 0.76 +1.5 571,939 - HMPREF1078_RS06110 0.76 -0.9 571,939 - HMPREF1078_RS06110 0.76 +1.3 571,964 + HMPREF1078_RS06110 0.77 +1.1 571,964 + HMPREF1078_RS06110 0.77 -0.3 571,965 - HMPREF1078_RS06110 0.77 +0.4 571,975 + HMPREF1078_RS06110 0.77 -0.9 571,975 + HMPREF1078_RS06110 0.77 +1.7 572,163 + HMPREF1078_RS06110 0.85 -0.5 572,163 + HMPREF1078_RS06110 0.85 +0.5 572,164 - HMPREF1078_RS06110 0.85 -0.3 572,164 - HMPREF1078_RS06110 0.85 +2.1 572,164 - HMPREF1078_RS06110 0.85 -1.4 572,265 + HMPREF1078_RS06110 0.90 -0.2 572,269 + HMPREF1078_RS06110 0.90 +0.6 572,269 + HMPREF1078_RS06110 0.90 -1.0 572,270 - HMPREF1078_RS06110 0.90 +1.7 572,335 + -0.5 572,343 + -0.5 572,344 - +1.3 572,344 - +2.0 572,498 + +0.6 572,516 + +0.1 572,522 + -0.9 572,523 - -0.8 572,528 - -0.8 572,870 + HMPREF1078_RS06115 0.16 -1.3 572,870 + HMPREF1078_RS06115 0.16 +0.2 573,016 - HMPREF1078_RS06115 0.22 -0.0 573,018 - HMPREF1078_RS06115 0.22 -2.4 573,055 + HMPREF1078_RS06115 0.24 -1.3 573,211 + HMPREF1078_RS06115 0.30 +0.3 573,332 + HMPREF1078_RS06115 0.36 -0.5 573,332 + HMPREF1078_RS06115 0.36 +0.5 573,409 + HMPREF1078_RS06115 0.39 -0.0
Or see this region's nucleotide sequence