Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05865 and HMPREF1078_RS05870 are separated by 158 nucleotides HMPREF1078_RS05870 and HMPREF1078_RS05875 are separated by 139 nucleotides HMPREF1078_RS05875 and HMPREF1078_RS05880 are separated by 1 nucleotides HMPREF1078_RS05880 and HMPREF1078_RS05885 are separated by 79 nucleotides
HMPREF1078_RS05865: HMPREF1078_RS05865 - glycoside hydrolase family 2 TIM barrel-domain containing protein, at 501,143 to 503,644
_RS05865
HMPREF1078_RS05870: HMPREF1078_RS05870 - PglZ domain-containing protein, at 503,803 to 505,353
_RS05870
HMPREF1078_RS05875: HMPREF1078_RS05875 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 505,493 to 505,912
_RS05875
HMPREF1078_RS05880: HMPREF1078_RS05880 - immunity 17 family protein, at 505,914 to 506,129
_RS05880
HMPREF1078_RS05885: HMPREF1078_RS05885 - ribonuclease R, at 506,209 to 508,389
_RS05885
Position (kb) 503
504
505
506 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 502.807 kb on + strand, within HMPREF1078_RS05865 at 502.839 kb on + strand, within HMPREF1078_RS05865 at 502.865 kb on + strand, within HMPREF1078_RS05865 at 502.866 kb on - strand, within HMPREF1078_RS05865 at 502.965 kb on + strand, within HMPREF1078_RS05865 at 503.042 kb on - strand, within HMPREF1078_RS05865 at 503.124 kb on - strand, within HMPREF1078_RS05865 at 503.226 kb on + strand, within HMPREF1078_RS05865 at 503.227 kb on - strand, within HMPREF1078_RS05865 at 503.257 kb on - strand, within HMPREF1078_RS05865 at 503.302 kb on + strand, within HMPREF1078_RS05865 at 503.302 kb on + strand, within HMPREF1078_RS05865 at 503.303 kb on - strand, within HMPREF1078_RS05865 at 503.335 kb on - strand, within HMPREF1078_RS05865 at 503.568 kb on - strand at 503.631 kb on - strand at 503.644 kb on + strand at 503.644 kb on + strand at 503.644 kb on + strand at 503.644 kb on + strand at 503.644 kb on + strand at 503.645 kb on - strand at 503.650 kb on + strand at 503.651 kb on - strand at 503.651 kb on - strand at 503.651 kb on - strand at 503.651 kb on - strand at 503.666 kb on - strand at 503.667 kb on + strand at 503.673 kb on - strand at 503.684 kb on - strand at 503.730 kb on + strand at 503.731 kb on - strand at 503.796 kb on + strand at 503.802 kb on + strand at 503.802 kb on + strand at 503.938 kb on - strand at 504.150 kb on + strand, within HMPREF1078_RS05870 at 504.176 kb on + strand, within HMPREF1078_RS05870 at 504.176 kb on + strand, within HMPREF1078_RS05870 at 504.177 kb on - strand, within HMPREF1078_RS05870 at 504.177 kb on - strand, within HMPREF1078_RS05870 at 504.182 kb on + strand, within HMPREF1078_RS05870 at 504.293 kb on - strand, within HMPREF1078_RS05870 at 504.494 kb on + strand, within HMPREF1078_RS05870 at 504.494 kb on + strand, within HMPREF1078_RS05870 at 504.495 kb on - strand, within HMPREF1078_RS05870 at 504.562 kb on + strand, within HMPREF1078_RS05870 at 504.563 kb on - strand, within HMPREF1078_RS05870 at 504.566 kb on - strand, within HMPREF1078_RS05870 at 504.616 kb on + strand, within HMPREF1078_RS05870 at 504.768 kb on + strand, within HMPREF1078_RS05870 at 504.769 kb on - strand, within HMPREF1078_RS05870 at 504.769 kb on - strand, within HMPREF1078_RS05870 at 504.788 kb on + strand, within HMPREF1078_RS05870 at 504.788 kb on + strand, within HMPREF1078_RS05870 at 504.788 kb on + strand, within HMPREF1078_RS05870 at 504.802 kb on + strand, within HMPREF1078_RS05870 at 504.803 kb on - strand, within HMPREF1078_RS05870 at 504.864 kb on - strand, within HMPREF1078_RS05870 at 504.879 kb on + strand, within HMPREF1078_RS05870 at 504.880 kb on - strand, within HMPREF1078_RS05870 at 504.943 kb on + strand, within HMPREF1078_RS05870 at 505.002 kb on + strand, within HMPREF1078_RS05870 at 505.002 kb on + strand, within HMPREF1078_RS05870 at 505.020 kb on + strand, within HMPREF1078_RS05870 at 505.021 kb on - strand, within HMPREF1078_RS05870 at 505.021 kb on - strand, within HMPREF1078_RS05870 at 505.079 kb on + strand, within HMPREF1078_RS05870 at 505.079 kb on + strand, within HMPREF1078_RS05870 at 505.093 kb on - strand, within HMPREF1078_RS05870 at 505.098 kb on + strand, within HMPREF1078_RS05870 at 505.135 kb on + strand, within HMPREF1078_RS05870 at 505.141 kb on - strand, within HMPREF1078_RS05870 at 505.210 kb on + strand at 505.211 kb on - strand at 505.212 kb on + strand at 505.212 kb on + strand at 505.212 kb on + strand at 505.213 kb on - strand at 505.213 kb on - strand at 505.255 kb on + strand at 505.255 kb on + strand at 505.255 kb on + strand at 505.256 kb on - strand at 505.256 kb on - strand at 505.257 kb on + strand at 505.257 kb on + strand at 505.265 kb on - strand at 505.274 kb on - strand at 505.279 kb on - strand at 505.284 kb on + strand at 505.284 kb on + strand at 505.302 kb on + strand at 505.302 kb on + strand at 505.302 kb on + strand at 505.303 kb on - strand at 505.369 kb on + strand at 505.390 kb on + strand at 505.390 kb on + strand at 505.899 kb on + strand at 505.929 kb on + strand at 505.942 kb on + strand, within HMPREF1078_RS05880 at 506.042 kb on - strand, within HMPREF1078_RS05880 at 506.068 kb on - strand, within HMPREF1078_RS05880 at 506.115 kb on - strand at 506.130 kb on + strand at 506.164 kb on - strand at 506.264 kb on - strand at 506.345 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 502,807 + HMPREF1078_RS05865 0.67 -2.0 502,839 + HMPREF1078_RS05865 0.68 -2.8 502,865 + HMPREF1078_RS05865 0.69 -0.3 502,866 - HMPREF1078_RS05865 0.69 +0.9 502,965 + HMPREF1078_RS05865 0.73 +0.1 503,042 - HMPREF1078_RS05865 0.76 +0.2 503,124 - HMPREF1078_RS05865 0.79 -1.8 503,226 + HMPREF1078_RS05865 0.83 -0.8 503,227 - HMPREF1078_RS05865 0.83 -0.6 503,257 - HMPREF1078_RS05865 0.84 -1.0 503,302 + HMPREF1078_RS05865 0.86 +1.8 503,302 + HMPREF1078_RS05865 0.86 -0.4 503,303 - HMPREF1078_RS05865 0.86 -0.7 503,335 - HMPREF1078_RS05865 0.88 -1.5 503,568 - +0.2 503,631 - +0.0 503,644 + +1.8 503,644 + +0.1 503,644 + -1.2 503,644 + +2.2 503,644 + +0.1 503,645 - -0.5 503,650 + -0.8 503,651 - -0.8 503,651 - -0.4 503,651 - -0.2 503,651 - +0.3 503,666 - +0.5 503,667 + -0.5 503,673 - -0.2 503,684 - -1.1 503,730 + +0.8 503,731 - -2.9 503,796 + -0.6 503,802 + -1.4 503,802 + -3.2 503,938 - +2.2 504,150 + HMPREF1078_RS05870 0.22 -1.2 504,176 + HMPREF1078_RS05870 0.24 -1.7 504,176 + HMPREF1078_RS05870 0.24 +0.0 504,177 - HMPREF1078_RS05870 0.24 -1.0 504,177 - HMPREF1078_RS05870 0.24 -1.2 504,182 + HMPREF1078_RS05870 0.24 +0.8 504,293 - HMPREF1078_RS05870 0.32 -1.8 504,494 + HMPREF1078_RS05870 0.45 -1.5 504,494 + HMPREF1078_RS05870 0.45 +0.8 504,495 - HMPREF1078_RS05870 0.45 +0.2 504,562 + HMPREF1078_RS05870 0.49 -1.0 504,563 - HMPREF1078_RS05870 0.49 +1.2 504,566 - HMPREF1078_RS05870 0.49 -1.1 504,616 + HMPREF1078_RS05870 0.52 -1.3 504,768 + HMPREF1078_RS05870 0.62 -1.4 504,769 - HMPREF1078_RS05870 0.62 -1.6 504,769 - HMPREF1078_RS05870 0.62 +0.2 504,788 + HMPREF1078_RS05870 0.64 -0.8 504,788 + HMPREF1078_RS05870 0.64 -0.8 504,788 + HMPREF1078_RS05870 0.64 +1.8 504,802 + HMPREF1078_RS05870 0.64 -2.4 504,803 - HMPREF1078_RS05870 0.64 -1.0 504,864 - HMPREF1078_RS05870 0.68 -1.0 504,879 + HMPREF1078_RS05870 0.69 -0.5 504,880 - HMPREF1078_RS05870 0.69 +0.5 504,943 + HMPREF1078_RS05870 0.74 -0.7 505,002 + HMPREF1078_RS05870 0.77 -1.4 505,002 + HMPREF1078_RS05870 0.77 +0.8 505,020 + HMPREF1078_RS05870 0.78 +1.7 505,021 - HMPREF1078_RS05870 0.79 -0.1 505,021 - HMPREF1078_RS05870 0.79 +0.8 505,079 + HMPREF1078_RS05870 0.82 -0.2 505,079 + HMPREF1078_RS05870 0.82 -1.5 505,093 - HMPREF1078_RS05870 0.83 -0.7 505,098 + HMPREF1078_RS05870 0.83 -0.9 505,135 + HMPREF1078_RS05870 0.86 -1.4 505,141 - HMPREF1078_RS05870 0.86 -1.5 505,210 + -2.0 505,211 - -1.0 505,212 + +1.0 505,212 + +1.5 505,212 + -0.2 505,213 - +0.8 505,213 - -1.8 505,255 + -0.8 505,255 + +1.5 505,255 + -0.4 505,256 - -0.0 505,256 - +1.8 505,257 + -0.5 505,257 + -0.4 505,265 - +0.5 505,274 - -1.4 505,279 - -1.6 505,284 + +1.2 505,284 + +0.2 505,302 + +0.9 505,302 + +0.5 505,302 + -0.3 505,303 - +1.2 505,369 + +2.1 505,390 + +0.3 505,390 + +0.5 505,899 + -0.5 505,929 + -0.1 505,942 + HMPREF1078_RS05880 0.13 -2.9 506,042 - HMPREF1078_RS05880 0.59 -0.9 506,068 - HMPREF1078_RS05880 0.71 -0.4 506,115 - +0.4 506,130 + -1.1 506,164 - +0.2 506,264 - -1.7 506,345 + -1.4
Or see this region's nucleotide sequence