Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05505 and HMPREF1078_RS05510 are separated by 6 nucleotides HMPREF1078_RS05510 and HMPREF1078_RS05515 are separated by 47 nucleotides
HMPREF1078_RS05505: HMPREF1078_RS05505 - gliding motility protein GldL, at 390,406 to 391,437
_RS05505
HMPREF1078_RS05510: HMPREF1078_RS05510 - gliding motility protein GldM, at 391,444 to 393,012
_RS05510
HMPREF1078_RS05515: HMPREF1078_RS05515 - gliding motility protein GldN, at 393,060 to 394,151
_RS05515
Position (kb) 391
392
393
394 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 390.451 kb on + strand at 390.453 kb on + strand at 390.453 kb on + strand at 390.474 kb on + strand at 390.475 kb on - strand at 390.475 kb on - strand at 390.477 kb on + strand at 390.478 kb on - strand at 390.479 kb on + strand at 390.480 kb on - strand at 390.500 kb on + strand at 390.500 kb on + strand at 390.500 kb on + strand at 390.565 kb on - strand, within HMPREF1078_RS05505 at 390.669 kb on + strand, within HMPREF1078_RS05505 at 390.669 kb on + strand, within HMPREF1078_RS05505 at 390.740 kb on + strand, within HMPREF1078_RS05505 at 390.820 kb on - strand, within HMPREF1078_RS05505 at 390.889 kb on + strand, within HMPREF1078_RS05505 at 390.890 kb on - strand, within HMPREF1078_RS05505 at 390.909 kb on + strand, within HMPREF1078_RS05505 at 390.909 kb on + strand, within HMPREF1078_RS05505 at 390.986 kb on - strand, within HMPREF1078_RS05505 at 390.988 kb on - strand, within HMPREF1078_RS05505 at 390.996 kb on + strand, within HMPREF1078_RS05505 at 391.098 kb on - strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.140 kb on + strand, within HMPREF1078_RS05505 at 391.141 kb on - strand, within HMPREF1078_RS05505 at 391.175 kb on - strand, within HMPREF1078_RS05505 at 391.257 kb on - strand, within HMPREF1078_RS05505 at 391.258 kb on + strand, within HMPREF1078_RS05505 at 391.258 kb on + strand, within HMPREF1078_RS05505 at 391.258 kb on + strand, within HMPREF1078_RS05505 at 391.259 kb on - strand, within HMPREF1078_RS05505 at 391.259 kb on - strand, within HMPREF1078_RS05505 at 391.279 kb on - strand, within HMPREF1078_RS05505 at 391.367 kb on - strand at 391.416 kb on + strand at 391.416 kb on + strand at 391.416 kb on + strand at 391.417 kb on - strand at 391.435 kb on + strand at 391.461 kb on + strand at 391.461 kb on + strand at 391.501 kb on + strand at 391.502 kb on - strand at 391.502 kb on - strand at 391.584 kb on + strand at 391.585 kb on - strand at 391.590 kb on + strand at 391.591 kb on - strand at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.642 kb on + strand, within HMPREF1078_RS05510 at 391.643 kb on - strand, within HMPREF1078_RS05510 at 391.643 kb on - strand, within HMPREF1078_RS05510 at 391.667 kb on + strand, within HMPREF1078_RS05510 at 391.667 kb on + strand, within HMPREF1078_RS05510 at 391.727 kb on - strand, within HMPREF1078_RS05510 at 391.727 kb on - strand, within HMPREF1078_RS05510 at 391.789 kb on - strand, within HMPREF1078_RS05510 at 391.792 kb on - strand, within HMPREF1078_RS05510 at 392.016 kb on + strand, within HMPREF1078_RS05510 at 392.038 kb on - strand, within HMPREF1078_RS05510 at 392.072 kb on - strand, within HMPREF1078_RS05510 at 392.192 kb on - strand, within HMPREF1078_RS05510 at 392.192 kb on - strand, within HMPREF1078_RS05510 at 392.203 kb on - strand, within HMPREF1078_RS05510 at 392.210 kb on + strand, within HMPREF1078_RS05510 at 392.245 kb on + strand, within HMPREF1078_RS05510 at 392.269 kb on + strand, within HMPREF1078_RS05510 at 392.269 kb on + strand, within HMPREF1078_RS05510 at 392.270 kb on - strand, within HMPREF1078_RS05510 at 392.270 kb on - strand, within HMPREF1078_RS05510 at 392.297 kb on + strand, within HMPREF1078_RS05510 at 392.332 kb on + strand, within HMPREF1078_RS05510 at 392.334 kb on + strand, within HMPREF1078_RS05510 at 392.389 kb on + strand, within HMPREF1078_RS05510 at 392.390 kb on - strand, within HMPREF1078_RS05510 at 392.443 kb on + strand, within HMPREF1078_RS05510 at 392.443 kb on + strand, within HMPREF1078_RS05510 at 392.443 kb on + strand, within HMPREF1078_RS05510 at 392.601 kb on + strand, within HMPREF1078_RS05510 at 392.601 kb on + strand, within HMPREF1078_RS05510 at 392.651 kb on + strand, within HMPREF1078_RS05510 at 392.652 kb on - strand, within HMPREF1078_RS05510 at 392.679 kb on + strand, within HMPREF1078_RS05510 at 392.686 kb on + strand, within HMPREF1078_RS05510 at 392.688 kb on + strand, within HMPREF1078_RS05510 at 392.688 kb on + strand, within HMPREF1078_RS05510 at 392.688 kb on + strand, within HMPREF1078_RS05510 at 392.689 kb on - strand, within HMPREF1078_RS05510 at 392.689 kb on - strand, within HMPREF1078_RS05510 at 392.903 kb on - strand at 392.903 kb on - strand at 392.903 kb on - strand at 392.904 kb on + strand at 392.905 kb on - strand at 392.905 kb on - strand at 392.905 kb on - strand at 392.936 kb on - strand at 392.936 kb on - strand at 392.954 kb on + strand at 392.955 kb on - strand at 392.979 kb on + strand at 392.979 kb on + strand at 392.979 kb on + strand at 392.980 kb on - strand at 392.980 kb on - strand at 392.999 kb on + strand at 393.010 kb on + strand at 393.010 kb on + strand at 393.010 kb on + strand at 393.015 kb on + strand at 393.016 kb on - strand at 393.016 kb on - strand at 393.020 kb on + strand at 393.020 kb on + strand at 393.050 kb on - strand at 393.050 kb on - strand at 393.057 kb on + strand at 393.057 kb on + strand at 393.057 kb on + strand at 393.058 kb on - strand at 393.059 kb on + strand at 393.059 kb on + strand at 393.060 kb on - strand at 393.070 kb on + strand at 393.070 kb on + strand at 393.071 kb on - strand at 393.072 kb on + strand at 393.073 kb on - strand at 393.074 kb on + strand at 393.075 kb on + strand at 393.075 kb on + strand at 393.076 kb on - strand at 393.076 kb on - strand at 393.079 kb on + strand at 393.079 kb on + strand at 393.079 kb on + strand at 393.080 kb on - strand at 393.080 kb on - strand at 393.251 kb on + strand, within HMPREF1078_RS05515 at 393.276 kb on - strand, within HMPREF1078_RS05515 at 393.307 kb on - strand, within HMPREF1078_RS05515 at 393.324 kb on - strand, within HMPREF1078_RS05515 at 393.324 kb on - strand, within HMPREF1078_RS05515 at 393.346 kb on + strand, within HMPREF1078_RS05515 at 393.346 kb on + strand, within HMPREF1078_RS05515 at 393.346 kb on + strand, within HMPREF1078_RS05515 at 393.347 kb on - strand, within HMPREF1078_RS05515 at 393.347 kb on - strand, within HMPREF1078_RS05515 at 393.348 kb on + strand, within HMPREF1078_RS05515 at 393.348 kb on + strand, within HMPREF1078_RS05515 at 393.348 kb on + strand, within HMPREF1078_RS05515 at 393.348 kb on + strand, within HMPREF1078_RS05515 at 393.349 kb on - strand, within HMPREF1078_RS05515 at 393.349 kb on - strand, within HMPREF1078_RS05515 at 393.349 kb on - strand, within HMPREF1078_RS05515 at 393.351 kb on + strand, within HMPREF1078_RS05515 at 393.351 kb on + strand, within HMPREF1078_RS05515 at 393.433 kb on - strand, within HMPREF1078_RS05515 at 393.439 kb on - strand, within HMPREF1078_RS05515 at 393.510 kb on - strand, within HMPREF1078_RS05515 at 393.601 kb on - strand, within HMPREF1078_RS05515 at 393.601 kb on - strand, within HMPREF1078_RS05515 at 393.601 kb on - strand, within HMPREF1078_RS05515 at 393.603 kb on + strand, within HMPREF1078_RS05515 at 393.604 kb on - strand, within HMPREF1078_RS05515 at 393.607 kb on + strand, within HMPREF1078_RS05515 at 393.607 kb on + strand, within HMPREF1078_RS05515 at 393.608 kb on - strand, within HMPREF1078_RS05515 at 393.608 kb on - strand, within HMPREF1078_RS05515 at 393.608 kb on - strand, within HMPREF1078_RS05515 at 393.621 kb on + strand, within HMPREF1078_RS05515 at 393.750 kb on + strand, within HMPREF1078_RS05515 at 393.751 kb on - strand, within HMPREF1078_RS05515 at 393.753 kb on - strand, within HMPREF1078_RS05515 at 393.753 kb on - strand, within HMPREF1078_RS05515 at 393.765 kb on + strand, within HMPREF1078_RS05515 at 393.766 kb on - strand, within HMPREF1078_RS05515 at 393.766 kb on - strand, within HMPREF1078_RS05515 at 393.767 kb on + strand, within HMPREF1078_RS05515 at 393.768 kb on - strand, within HMPREF1078_RS05515 at 393.768 kb on - strand, within HMPREF1078_RS05515 at 393.845 kb on + strand, within HMPREF1078_RS05515 at 394.001 kb on + strand, within HMPREF1078_RS05515 at 394.001 kb on + strand, within HMPREF1078_RS05515 at 394.001 kb on + strand, within HMPREF1078_RS05515
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 390,451 + -2.1 390,453 + -0.8 390,453 + +0.7 390,474 + +0.0 390,475 - -0.3 390,475 - +0.0 390,477 + -1.8 390,478 - +1.2 390,479 + -0.2 390,480 - +0.2 390,500 + -0.9 390,500 + -0.2 390,500 + +0.8 390,565 - HMPREF1078_RS05505 0.15 +0.0 390,669 + HMPREF1078_RS05505 0.25 -2.0 390,669 + HMPREF1078_RS05505 0.25 -0.9 390,740 + HMPREF1078_RS05505 0.32 +1.2 390,820 - HMPREF1078_RS05505 0.40 +1.8 390,889 + HMPREF1078_RS05505 0.47 +0.5 390,890 - HMPREF1078_RS05505 0.47 +0.8 390,909 + HMPREF1078_RS05505 0.49 -0.9 390,909 + HMPREF1078_RS05505 0.49 -1.5 390,986 - HMPREF1078_RS05505 0.56 -1.3 390,988 - HMPREF1078_RS05505 0.56 -0.2 390,996 + HMPREF1078_RS05505 0.57 -1.4 391,098 - HMPREF1078_RS05505 0.67 +0.2 391,140 + HMPREF1078_RS05505 0.71 -1.3 391,140 + HMPREF1078_RS05505 0.71 -1.7 391,140 + HMPREF1078_RS05505 0.71 -1.6 391,140 + HMPREF1078_RS05505 0.71 -1.6 391,140 + HMPREF1078_RS05505 0.71 -0.9 391,141 - HMPREF1078_RS05505 0.71 -1.3 391,175 - HMPREF1078_RS05505 0.75 +0.2 391,257 - HMPREF1078_RS05505 0.82 -1.5 391,258 + HMPREF1078_RS05505 0.83 -0.9 391,258 + HMPREF1078_RS05505 0.83 -0.5 391,258 + HMPREF1078_RS05505 0.83 +1.1 391,259 - HMPREF1078_RS05505 0.83 -1.0 391,259 - HMPREF1078_RS05505 0.83 -0.6 391,279 - HMPREF1078_RS05505 0.85 +0.0 391,367 - -1.0 391,416 + -0.6 391,416 + +0.5 391,416 + -0.3 391,417 - +0.2 391,435 + +1.8 391,461 + +0.0 391,461 + +1.2 391,501 + +0.5 391,502 - +0.8 391,502 - -0.5 391,584 + +0.0 391,585 - -0.2 391,590 + -1.0 391,591 - -1.8 391,642 + HMPREF1078_RS05510 0.13 -0.6 391,642 + HMPREF1078_RS05510 0.13 -0.2 391,642 + HMPREF1078_RS05510 0.13 -0.6 391,642 + HMPREF1078_RS05510 0.13 -1.8 391,642 + HMPREF1078_RS05510 0.13 -1.6 391,642 + HMPREF1078_RS05510 0.13 +0.8 391,643 - HMPREF1078_RS05510 0.13 +1.2 391,643 - HMPREF1078_RS05510 0.13 +0.8 391,667 + HMPREF1078_RS05510 0.14 +1.2 391,667 + HMPREF1078_RS05510 0.14 +2.4 391,727 - HMPREF1078_RS05510 0.18 -1.3 391,727 - HMPREF1078_RS05510 0.18 -0.3 391,789 - HMPREF1078_RS05510 0.22 -1.0 391,792 - HMPREF1078_RS05510 0.22 +1.2 392,016 + HMPREF1078_RS05510 0.36 -0.6 392,038 - HMPREF1078_RS05510 0.38 -2.0 392,072 - HMPREF1078_RS05510 0.40 +0.4 392,192 - HMPREF1078_RS05510 0.48 -0.8 392,192 - HMPREF1078_RS05510 0.48 -2.0 392,203 - HMPREF1078_RS05510 0.48 +0.5 392,210 + HMPREF1078_RS05510 0.49 -0.8 392,245 + HMPREF1078_RS05510 0.51 +2.3 392,269 + HMPREF1078_RS05510 0.53 +0.8 392,269 + HMPREF1078_RS05510 0.53 -0.9 392,270 - HMPREF1078_RS05510 0.53 +0.8 392,270 - HMPREF1078_RS05510 0.53 +1.2 392,297 + HMPREF1078_RS05510 0.54 +0.2 392,332 + HMPREF1078_RS05510 0.57 +2.8 392,334 + HMPREF1078_RS05510 0.57 -0.5 392,389 + HMPREF1078_RS05510 0.60 +0.0 392,390 - HMPREF1078_RS05510 0.60 -1.0 392,443 + HMPREF1078_RS05510 0.64 -0.3 392,443 + HMPREF1078_RS05510 0.64 +0.2 392,443 + HMPREF1078_RS05510 0.64 -2.0 392,601 + HMPREF1078_RS05510 0.74 -1.9 392,601 + HMPREF1078_RS05510 0.74 -1.0 392,651 + HMPREF1078_RS05510 0.77 +0.2 392,652 - HMPREF1078_RS05510 0.77 +1.8 392,679 + HMPREF1078_RS05510 0.79 -0.6 392,686 + HMPREF1078_RS05510 0.79 -0.1 392,688 + HMPREF1078_RS05510 0.79 -0.9 392,688 + HMPREF1078_RS05510 0.79 -0.9 392,688 + HMPREF1078_RS05510 0.79 +1.5 392,689 - HMPREF1078_RS05510 0.79 +1.8 392,689 - HMPREF1078_RS05510 0.79 -1.3 392,903 - -0.8 392,903 - -0.6 392,903 - -0.3 392,904 + -0.2 392,905 - +1.2 392,905 - +0.0 392,905 - +0.2 392,936 - -0.2 392,936 - -1.4 392,954 + +0.2 392,955 - +1.2 392,979 + -2.3 392,979 + -0.7 392,979 + -1.5 392,980 - +0.5 392,980 - +1.8 392,999 + -1.5 393,010 + +0.0 393,010 + -1.1 393,010 + -0.4 393,015 + -2.5 393,016 - +0.2 393,016 - -0.6 393,020 + +2.1 393,020 + -0.5 393,050 - +2.8 393,050 - -1.8 393,057 + +0.8 393,057 + +0.0 393,057 + -2.0 393,058 - +0.0 393,059 + -0.6 393,059 + +1.8 393,060 - -1.6 393,070 + -1.6 393,070 + -0.8 393,071 - -1.9 393,072 + +0.2 393,073 - -1.1 393,074 + -1.2 393,075 + -0.5 393,075 + +1.2 393,076 - +3.8 393,076 - +0.1 393,079 + -1.7 393,079 + +2.1 393,079 + -2.1 393,080 - -0.5 393,080 - -1.1 393,251 + HMPREF1078_RS05515 0.17 -1.9 393,276 - HMPREF1078_RS05515 0.20 +0.8 393,307 - HMPREF1078_RS05515 0.23 -0.5 393,324 - HMPREF1078_RS05515 0.24 +1.0 393,324 - HMPREF1078_RS05515 0.24 +2.3 393,346 + HMPREF1078_RS05515 0.26 +0.0 393,346 + HMPREF1078_RS05515 0.26 -1.6 393,346 + HMPREF1078_RS05515 0.26 -0.6 393,347 - HMPREF1078_RS05515 0.26 -0.8 393,347 - HMPREF1078_RS05515 0.26 +0.2 393,348 + HMPREF1078_RS05515 0.26 +1.2 393,348 + HMPREF1078_RS05515 0.26 +2.8 393,348 + HMPREF1078_RS05515 0.26 +1.2 393,348 + HMPREF1078_RS05515 0.26 -0.5 393,349 - HMPREF1078_RS05515 0.26 -1.8 393,349 - HMPREF1078_RS05515 0.26 +1.2 393,349 - HMPREF1078_RS05515 0.26 +0.8 393,351 + HMPREF1078_RS05515 0.27 +0.0 393,351 + HMPREF1078_RS05515 0.27 -0.2 393,433 - HMPREF1078_RS05515 0.34 -0.8 393,439 - HMPREF1078_RS05515 0.35 -0.9 393,510 - HMPREF1078_RS05515 0.41 +0.0 393,601 - HMPREF1078_RS05515 0.50 -1.6 393,601 - HMPREF1078_RS05515 0.50 -1.6 393,601 - HMPREF1078_RS05515 0.50 -0.9 393,603 + HMPREF1078_RS05515 0.50 +0.8 393,604 - HMPREF1078_RS05515 0.50 -0.8 393,607 + HMPREF1078_RS05515 0.50 -1.3 393,607 + HMPREF1078_RS05515 0.50 -0.5 393,608 - HMPREF1078_RS05515 0.50 +1.2 393,608 - HMPREF1078_RS05515 0.50 +1.8 393,608 - HMPREF1078_RS05515 0.50 -0.5 393,621 + HMPREF1078_RS05515 0.51 -2.6 393,750 + HMPREF1078_RS05515 0.63 -0.3 393,751 - HMPREF1078_RS05515 0.63 -1.5 393,753 - HMPREF1078_RS05515 0.63 -1.3 393,753 - HMPREF1078_RS05515 0.63 +0.5 393,765 + HMPREF1078_RS05515 0.65 -0.3 393,766 - HMPREF1078_RS05515 0.65 -1.6 393,766 - HMPREF1078_RS05515 0.65 +0.5 393,767 + HMPREF1078_RS05515 0.65 -0.9 393,768 - HMPREF1078_RS05515 0.65 +0.8 393,768 - HMPREF1078_RS05515 0.65 -1.0 393,845 + HMPREF1078_RS05515 0.72 +0.1 394,001 + HMPREF1078_RS05515 0.86 -1.2 394,001 + HMPREF1078_RS05515 0.86 -2.8 394,001 + HMPREF1078_RS05515 0.86 -0.8
Or see this region's nucleotide sequence