Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05480 and HMPREF1078_RS05485 are separated by 599 nucleotides HMPREF1078_RS05485 and HMPREF1078_RS05490 are separated by 73 nucleotides HMPREF1078_RS05490 and HMPREF1078_RS05495 are separated by 111 nucleotides
HMPREF1078_RS05480: HMPREF1078_RS05480 - hypothetical protein, at 385,575 to 386,366
_RS05480
HMPREF1078_RS05485: HMPREF1078_RS05485 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 386,966 to 387,529
_RS05485
HMPREF1078_RS05490: HMPREF1078_RS05490 - DUF2795 domain-containing protein, at 387,603 to 387,824
_RS05490
HMPREF1078_RS05495: HMPREF1078_RS05495 - type IX secretion system membrane protein PorP/SprF, at 387,936 to 388,886
_RS05495
Position (kb) 386
387
388 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 386.372 kb on + strand at 386.383 kb on - strand at 386.405 kb on + strand at 386.406 kb on - strand at 386.407 kb on + strand at 386.463 kb on + strand at 386.467 kb on - strand at 386.484 kb on - strand at 386.498 kb on - strand at 386.508 kb on + strand at 386.509 kb on - strand at 386.509 kb on - strand at 386.528 kb on + strand at 386.532 kb on - strand at 386.532 kb on - strand at 386.541 kb on + strand at 386.551 kb on - strand at 386.562 kb on + strand at 386.636 kb on + strand at 386.648 kb on + strand at 386.680 kb on + strand at 386.692 kb on + strand at 386.696 kb on + strand at 386.696 kb on + strand at 386.697 kb on - strand at 386.701 kb on - strand at 386.704 kb on + strand at 386.705 kb on - strand at 386.705 kb on - strand at 386.707 kb on + strand at 386.707 kb on + strand at 386.707 kb on + strand at 386.708 kb on - strand at 386.708 kb on - strand at 386.708 kb on - strand at 386.747 kb on + strand at 386.748 kb on - strand at 386.820 kb on - strand at 386.896 kb on + strand at 386.896 kb on + strand at 386.897 kb on - strand at 386.901 kb on + strand at 386.939 kb on + strand at 386.939 kb on + strand at 386.940 kb on - strand at 386.940 kb on - strand at 386.953 kb on - strand at 386.958 kb on - strand at 386.966 kb on - strand at 386.982 kb on + strand at 386.983 kb on - strand at 386.983 kb on - strand at 386.983 kb on - strand at 386.984 kb on + strand at 386.984 kb on + strand at 387.018 kb on + strand at 387.019 kb on - strand at 387.066 kb on - strand, within HMPREF1078_RS05485 at 387.070 kb on + strand, within HMPREF1078_RS05485 at 387.071 kb on - strand, within HMPREF1078_RS05485 at 387.183 kb on - strand, within HMPREF1078_RS05485 at 387.183 kb on - strand, within HMPREF1078_RS05485 at 387.220 kb on - strand, within HMPREF1078_RS05485 at 387.386 kb on + strand, within HMPREF1078_RS05485 at 387.387 kb on - strand, within HMPREF1078_RS05485 at 387.387 kb on - strand, within HMPREF1078_RS05485 at 387.472 kb on + strand, within HMPREF1078_RS05485 at 387.483 kb on + strand at 387.491 kb on - strand at 387.527 kb on + strand at 387.527 kb on + strand at 387.822 kb on + strand at 387.823 kb on - strand at 387.823 kb on - strand at 387.840 kb on + strand at 387.840 kb on + strand at 387.841 kb on - strand at 387.841 kb on - strand at 387.853 kb on + strand at 387.874 kb on - strand at 387.935 kb on + strand at 387.935 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 388.044 kb on - strand, within HMPREF1078_RS05495 at 388.053 kb on + strand, within HMPREF1078_RS05495 at 388.104 kb on + strand, within HMPREF1078_RS05495 at 388.104 kb on + strand, within HMPREF1078_RS05495 at 388.105 kb on - strand, within HMPREF1078_RS05495 at 388.229 kb on + strand, within HMPREF1078_RS05495 at 388.229 kb on + strand, within HMPREF1078_RS05495 at 388.229 kb on + strand, within HMPREF1078_RS05495 at 388.229 kb on + strand, within HMPREF1078_RS05495 at 388.230 kb on - strand, within HMPREF1078_RS05495 at 388.249 kb on - strand, within HMPREF1078_RS05495 at 388.255 kb on - strand, within HMPREF1078_RS05495 at 388.255 kb on - strand, within HMPREF1078_RS05495 at 388.434 kb on + strand, within HMPREF1078_RS05495 at 388.495 kb on + strand, within HMPREF1078_RS05495 at 388.518 kb on + strand, within HMPREF1078_RS05495
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 386,372 + -0.6 386,383 - +0.1 386,405 + -1.5 386,406 - -0.7 386,407 + +0.8 386,463 + -1.4 386,467 - -0.2 386,484 - -0.2 386,498 - -1.4 386,508 + -1.8 386,509 - +0.8 386,509 - +0.4 386,528 + -0.6 386,532 - +0.4 386,532 - -0.9 386,541 + +0.9 386,551 - +1.2 386,562 + -0.7 386,636 + +0.1 386,648 + +0.9 386,680 + -0.8 386,692 + +0.7 386,696 + +0.7 386,696 + -2.4 386,697 - -0.1 386,701 - -0.6 386,704 + +0.2 386,705 - -2.5 386,705 - -0.2 386,707 + +0.9 386,707 + -1.0 386,707 + -1.2 386,708 - +0.2 386,708 - -1.6 386,708 - -0.8 386,747 + -0.2 386,748 - -0.9 386,820 - -1.3 386,896 + -0.3 386,896 + +2.0 386,897 - +0.4 386,901 + -1.3 386,939 + +1.4 386,939 + -0.5 386,940 - -1.5 386,940 - +3.1 386,953 - +0.6 386,958 - +2.0 386,966 - +1.3 386,982 + -1.0 386,983 - -1.7 386,983 - -1.3 386,983 - +0.5 386,984 + -1.0 386,984 + +0.0 387,018 + +1.4 387,019 - -0.6 387,066 - HMPREF1078_RS05485 0.18 -1.7 387,070 + HMPREF1078_RS05485 0.18 -0.1 387,071 - HMPREF1078_RS05485 0.19 -3.1 387,183 - HMPREF1078_RS05485 0.38 -1.3 387,183 - HMPREF1078_RS05485 0.38 -1.9 387,220 - HMPREF1078_RS05485 0.45 -1.0 387,386 + HMPREF1078_RS05485 0.74 +0.1 387,387 - HMPREF1078_RS05485 0.75 -2.9 387,387 - HMPREF1078_RS05485 0.75 -0.5 387,472 + HMPREF1078_RS05485 0.90 -1.6 387,483 + +0.2 387,491 - +0.1 387,527 + +1.3 387,527 + +1.0 387,822 + +0.2 387,823 - -0.2 387,823 - -0.8 387,840 + -0.3 387,840 + +0.7 387,841 - +0.8 387,841 - +0.7 387,853 + -1.8 387,874 - -1.0 387,935 + +1.2 387,935 + -1.7 387,956 + +0.7 387,956 + +0.0 388,044 - HMPREF1078_RS05495 0.11 +1.2 388,053 + HMPREF1078_RS05495 0.12 -2.0 388,104 + HMPREF1078_RS05495 0.18 -0.5 388,104 + HMPREF1078_RS05495 0.18 +0.2 388,105 - HMPREF1078_RS05495 0.18 +0.5 388,229 + HMPREF1078_RS05495 0.31 +1.1 388,229 + HMPREF1078_RS05495 0.31 -0.2 388,229 + HMPREF1078_RS05495 0.31 -0.2 388,229 + HMPREF1078_RS05495 0.31 -0.5 388,230 - HMPREF1078_RS05495 0.31 +0.0 388,249 - HMPREF1078_RS05495 0.33 -1.0 388,255 - HMPREF1078_RS05495 0.34 -1.1 388,255 - HMPREF1078_RS05495 0.34 -0.3 388,434 + HMPREF1078_RS05495 0.52 -0.6 388,495 + HMPREF1078_RS05495 0.59 +0.2 388,518 + HMPREF1078_RS05495 0.61 +0.8
Or see this region's nucleotide sequence