Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS05095

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS05090 and HMPREF1078_RS05095 are separated by 5 nucleotidesHMPREF1078_RS05095 and HMPREF1078_RS05100 are separated by 125 nucleotides HMPREF1078_RS05090: HMPREF1078_RS05090 - AAA family ATPase, at 279,702 to 280,775 _RS05090 HMPREF1078_RS05095: HMPREF1078_RS05095 - helix-turn-helix domain-containing protein, at 280,781 to 281,068 _RS05095 HMPREF1078_RS05100: HMPREF1078_RS05100 - hypothetical protein, at 281,194 to 282,102 _RS05100 Position (kb) 280 281 282Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 279.812 kb on - strand, within HMPREF1078_RS05090at 279.868 kb on - strand, within HMPREF1078_RS05090at 279.966 kb on + strand, within HMPREF1078_RS05090at 279.967 kb on - strand, within HMPREF1078_RS05090at 279.971 kb on - strand, within HMPREF1078_RS05090at 280.041 kb on + strand, within HMPREF1078_RS05090at 280.041 kb on + strand, within HMPREF1078_RS05090at 280.042 kb on - strand, within HMPREF1078_RS05090at 280.042 kb on - strand, within HMPREF1078_RS05090at 280.043 kb on + strand, within HMPREF1078_RS05090at 280.044 kb on - strand, within HMPREF1078_RS05090at 280.044 kb on - strand, within HMPREF1078_RS05090at 280.056 kb on + strand, within HMPREF1078_RS05090at 280.057 kb on - strand, within HMPREF1078_RS05090at 280.151 kb on + strand, within HMPREF1078_RS05090at 280.152 kb on - strand, within HMPREF1078_RS05090at 280.188 kb on - strand, within HMPREF1078_RS05090at 280.197 kb on - strand, within HMPREF1078_RS05090at 280.197 kb on - strand, within HMPREF1078_RS05090at 280.199 kb on - strand, within HMPREF1078_RS05090at 280.199 kb on - strand, within HMPREF1078_RS05090at 280.230 kb on + strand, within HMPREF1078_RS05090at 280.230 kb on + strand, within HMPREF1078_RS05090at 280.313 kb on + strand, within HMPREF1078_RS05090at 280.314 kb on - strand, within HMPREF1078_RS05090at 280.314 kb on - strand, within HMPREF1078_RS05090at 280.325 kb on + strand, within HMPREF1078_RS05090at 280.325 kb on + strand, within HMPREF1078_RS05090at 280.325 kb on + strand, within HMPREF1078_RS05090at 280.325 kb on + strand, within HMPREF1078_RS05090at 280.326 kb on - strand, within HMPREF1078_RS05090at 280.326 kb on - strand, within HMPREF1078_RS05090at 280.326 kb on - strand, within HMPREF1078_RS05090at 280.326 kb on - strand, within HMPREF1078_RS05090at 280.326 kb on - strand, within HMPREF1078_RS05090at 280.328 kb on - strand, within HMPREF1078_RS05090at 280.330 kb on + strand, within HMPREF1078_RS05090at 280.335 kb on + strand, within HMPREF1078_RS05090at 280.335 kb on + strand, within HMPREF1078_RS05090at 280.336 kb on - strand, within HMPREF1078_RS05090at 280.336 kb on - strand, within HMPREF1078_RS05090at 280.336 kb on - strand, within HMPREF1078_RS05090at 280.431 kb on - strand, within HMPREF1078_RS05090at 280.446 kb on - strand, within HMPREF1078_RS05090at 280.456 kb on + strand, within HMPREF1078_RS05090at 280.472 kb on + strand, within HMPREF1078_RS05090at 280.634 kb on + strand, within HMPREF1078_RS05090at 280.635 kb on - strand, within HMPREF1078_RS05090at 280.635 kb on - strand, within HMPREF1078_RS05090at 280.635 kb on - strand, within HMPREF1078_RS05090at 280.635 kb on - strand, within HMPREF1078_RS05090at 280.635 kb on - strand, within HMPREF1078_RS05090at 280.673 kb on - strandat 280.739 kb on + strandat 280.783 kb on - strandat 280.809 kb on + strandat 280.809 kb on + strandat 280.810 kb on - strand, within HMPREF1078_RS05095at 280.950 kb on + strand, within HMPREF1078_RS05095at 280.950 kb on + strand, within HMPREF1078_RS05095at 280.999 kb on + strand, within HMPREF1078_RS05095at 281.095 kb on + strandat 281.096 kb on - strandat 281.096 kb on - strandat 281.096 kb on - strandat 281.096 kb on - strandat 281.096 kb on - strandat 281.161 kb on + strandat 281.162 kb on - strandat 281.189 kb on + strandat 281.190 kb on - strandat 281.219 kb on + strandat 281.250 kb on - strandat 281.323 kb on + strand, within HMPREF1078_RS05100at 281.361 kb on - strand, within HMPREF1078_RS05100at 281.370 kb on - strand, within HMPREF1078_RS05100at 281.370 kb on - strand, within HMPREF1078_RS05100at 281.370 kb on - strand, within HMPREF1078_RS05100at 281.373 kb on + strand, within HMPREF1078_RS05100at 281.374 kb on - strand, within HMPREF1078_RS05100at 281.374 kb on - strand, within HMPREF1078_RS05100at 281.375 kb on + strand, within HMPREF1078_RS05100at 281.396 kb on - strand, within HMPREF1078_RS05100at 281.396 kb on - strand, within HMPREF1078_RS05100at 281.422 kb on - strand, within HMPREF1078_RS05100at 281.484 kb on + strand, within HMPREF1078_RS05100at 281.487 kb on + strand, within HMPREF1078_RS05100at 281.488 kb on - strand, within HMPREF1078_RS05100at 281.600 kb on - strand, within HMPREF1078_RS05100at 281.656 kb on - strand, within HMPREF1078_RS05100at 281.658 kb on - strand, within HMPREF1078_RS05100at 281.658 kb on - strand, within HMPREF1078_RS05100at 281.660 kb on + strand, within HMPREF1078_RS05100at 281.704 kb on + strand, within HMPREF1078_RS05100at 281.750 kb on + strand, within HMPREF1078_RS05100at 281.750 kb on + strand, within HMPREF1078_RS05100at 281.751 kb on - strand, within HMPREF1078_RS05100at 281.781 kb on + strand, within HMPREF1078_RS05100at 281.887 kb on + strand, within HMPREF1078_RS05100at 281.909 kb on + strand, within HMPREF1078_RS05100at 281.927 kb on - strand, within HMPREF1078_RS05100at 281.932 kb on - strand, within HMPREF1078_RS05100at 281.932 kb on - strand, within HMPREF1078_RS05100at 281.994 kb on - strand, within HMPREF1078_RS05100at 282.052 kb on - strandat 282.055 kb on + strandat 282.056 kb on - strandat 282.056 kb on - strandat 282.056 kb on - strandat 282.056 kb on - strandat 282.059 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C)
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279,812 - HMPREF1078_RS05090 0.10 -0.0
279,868 - HMPREF1078_RS05090 0.15 -1.0
279,966 + HMPREF1078_RS05090 0.25 -0.2
279,967 - HMPREF1078_RS05090 0.25 -1.7
279,971 - HMPREF1078_RS05090 0.25 -0.7
280,041 + HMPREF1078_RS05090 0.32 +2.2
280,041 + HMPREF1078_RS05090 0.32 +0.6
280,042 - HMPREF1078_RS05090 0.32 +0.4
280,042 - HMPREF1078_RS05090 0.32 -1.9
280,043 + HMPREF1078_RS05090 0.32 -1.5
280,044 - HMPREF1078_RS05090 0.32 -0.1
280,044 - HMPREF1078_RS05090 0.32 -2.7
280,056 + HMPREF1078_RS05090 0.33 +0.2
280,057 - HMPREF1078_RS05090 0.33 +0.5
280,151 + HMPREF1078_RS05090 0.42 -0.8
280,152 - HMPREF1078_RS05090 0.42 -0.0
280,188 - HMPREF1078_RS05090 0.45 +1.6
280,197 - HMPREF1078_RS05090 0.46 +0.2
280,197 - HMPREF1078_RS05090 0.46 -0.7
280,199 - HMPREF1078_RS05090 0.46 +0.0
280,199 - HMPREF1078_RS05090 0.46 -1.9
280,230 + HMPREF1078_RS05090 0.49 +0.1
280,230 + HMPREF1078_RS05090 0.49 -0.2
280,313 + HMPREF1078_RS05090 0.57 -1.0
280,314 - HMPREF1078_RS05090 0.57 -0.5
280,314 - HMPREF1078_RS05090 0.57 +1.1
280,325 + HMPREF1078_RS05090 0.58 +1.5
280,325 + HMPREF1078_RS05090 0.58 +0.1
280,325 + HMPREF1078_RS05090 0.58 -0.1
280,325 + HMPREF1078_RS05090 0.58 -1.2
280,326 - HMPREF1078_RS05090 0.58 -0.8
280,326 - HMPREF1078_RS05090 0.58 +0.6
280,326 - HMPREF1078_RS05090 0.58 +1.9
280,326 - HMPREF1078_RS05090 0.58 -0.8
280,326 - HMPREF1078_RS05090 0.58 +0.2
280,328 - HMPREF1078_RS05090 0.58 -1.0
280,330 + HMPREF1078_RS05090 0.58 +0.3
280,335 + HMPREF1078_RS05090 0.59 -0.4
280,335 + HMPREF1078_RS05090 0.59 +0.2
280,336 - HMPREF1078_RS05090 0.59 -1.2
280,336 - HMPREF1078_RS05090 0.59 -0.0
280,336 - HMPREF1078_RS05090 0.59 -1.1
280,431 - HMPREF1078_RS05090 0.68 +0.1
280,446 - HMPREF1078_RS05090 0.69 -1.6
280,456 + HMPREF1078_RS05090 0.70 +0.9
280,472 + HMPREF1078_RS05090 0.72 -1.0
280,634 + HMPREF1078_RS05090 0.87 +0.8
280,635 - HMPREF1078_RS05090 0.87 -0.3
280,635 - HMPREF1078_RS05090 0.87 -0.3
280,635 - HMPREF1078_RS05090 0.87 +1.5
280,635 - HMPREF1078_RS05090 0.87 -1.1
280,635 - HMPREF1078_RS05090 0.87 +1.1
280,673 - -0.8
280,739 + -0.1
280,783 - -0.3
280,809 + -2.2
280,809 + -1.6
280,810 - HMPREF1078_RS05095 0.10 -1.1
280,950 + HMPREF1078_RS05095 0.59 -1.1
280,950 + HMPREF1078_RS05095 0.59 -1.3
280,999 + HMPREF1078_RS05095 0.76 -0.4
281,095 + -1.5
281,096 - -3.1
281,096 - +0.1
281,096 - -1.4
281,096 - -1.1
281,096 - -1.0
281,161 + -1.2
281,162 - +0.9
281,189 + -0.4
281,190 - -1.6
281,219 + -1.2
281,250 - +0.2
281,323 + HMPREF1078_RS05100 0.14 +0.0
281,361 - HMPREF1078_RS05100 0.18 -2.1
281,370 - HMPREF1078_RS05100 0.19 +1.0
281,370 - HMPREF1078_RS05100 0.19 -1.8
281,370 - HMPREF1078_RS05100 0.19 +1.2
281,373 + HMPREF1078_RS05100 0.20 -1.3
281,374 - HMPREF1078_RS05100 0.20 -0.0
281,374 - HMPREF1078_RS05100 0.20 -2.3
281,375 + HMPREF1078_RS05100 0.20 +1.1
281,396 - HMPREF1078_RS05100 0.22 -0.8
281,396 - HMPREF1078_RS05100 0.22 -0.3
281,422 - HMPREF1078_RS05100 0.25 +1.0
281,484 + HMPREF1078_RS05100 0.32 +0.2
281,487 + HMPREF1078_RS05100 0.32 -0.5
281,488 - HMPREF1078_RS05100 0.32 -0.1
281,600 - HMPREF1078_RS05100 0.45 +0.6
281,656 - HMPREF1078_RS05100 0.51 -1.8
281,658 - HMPREF1078_RS05100 0.51 -0.3
281,658 - HMPREF1078_RS05100 0.51 -0.6
281,660 + HMPREF1078_RS05100 0.51 -0.2
281,704 + HMPREF1078_RS05100 0.56 -0.3
281,750 + HMPREF1078_RS05100 0.61 +0.4
281,750 + HMPREF1078_RS05100 0.61 -0.9
281,751 - HMPREF1078_RS05100 0.61 -0.2
281,781 + HMPREF1078_RS05100 0.65 -0.2
281,887 + HMPREF1078_RS05100 0.76 -0.5
281,909 + HMPREF1078_RS05100 0.79 +0.2
281,927 - HMPREF1078_RS05100 0.81 +1.0
281,932 - HMPREF1078_RS05100 0.81 -3.1
281,932 - HMPREF1078_RS05100 0.81 -0.2
281,994 - HMPREF1078_RS05100 0.88 -0.0
282,052 - +0.1
282,055 + -2.1
282,056 - -2.5
282,056 - -3.0
282,056 - +0.1
282,056 - +0.1
282,059 - +0.6

Or see this region's nucleotide sequence