Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04915 and HMPREF1078_RS04920 overlap by 8 nucleotides HMPREF1078_RS04920 and HMPREF1078_RS04925 are separated by 190 nucleotides HMPREF1078_RS04925 and HMPREF1078_RS04930 are separated by 85 nucleotides
HMPREF1078_RS04915: HMPREF1078_RS04915 - CidA/LrgA family protein, at 239,807 to 240,157
_RS04915
HMPREF1078_RS04920: HMPREF1078_RS04920 - LrgB family protein, at 240,150 to 240,848
_RS04920
HMPREF1078_RS04925: HMPREF1078_RS04925 - elongation factor P, at 241,039 to 241,602
_RS04925
HMPREF1078_RS04930: HMPREF1078_RS04930 - DNA repair protein RadC, at 241,688 to 242,368
_RS04930
Position (kb) 240
241 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 239.210 kb on + strand at 239.210 kb on + strand at 239.215 kb on + strand at 239.257 kb on - strand at 239.288 kb on + strand at 239.300 kb on + strand at 239.312 kb on - strand at 239.467 kb on + strand at 239.467 kb on + strand at 239.468 kb on - strand at 239.469 kb on + strand at 239.517 kb on + strand at 239.518 kb on - strand at 239.520 kb on - strand at 239.534 kb on - strand at 239.534 kb on - strand at 239.771 kb on + strand at 239.800 kb on + strand at 239.801 kb on - strand at 239.801 kb on - strand at 239.801 kb on - strand at 239.801 kb on - strand at 239.812 kb on - strand at 239.812 kb on - strand at 239.814 kb on + strand at 239.814 kb on + strand at 239.881 kb on + strand, within HMPREF1078_RS04915 at 239.890 kb on + strand, within HMPREF1078_RS04915 at 239.890 kb on + strand, within HMPREF1078_RS04915 at 239.913 kb on + strand, within HMPREF1078_RS04915 at 239.914 kb on - strand, within HMPREF1078_RS04915 at 239.947 kb on + strand, within HMPREF1078_RS04915 at 240.108 kb on + strand, within HMPREF1078_RS04915 at 240.109 kb on - strand, within HMPREF1078_RS04915 at 240.109 kb on - strand, within HMPREF1078_RS04915 at 240.109 kb on - strand, within HMPREF1078_RS04915 at 240.239 kb on + strand, within HMPREF1078_RS04920 at 240.263 kb on + strand, within HMPREF1078_RS04920 at 240.264 kb on - strand, within HMPREF1078_RS04920 at 240.271 kb on + strand, within HMPREF1078_RS04920 at 240.272 kb on - strand, within HMPREF1078_RS04920 at 240.282 kb on - strand, within HMPREF1078_RS04920 at 240.282 kb on - strand, within HMPREF1078_RS04920 at 240.381 kb on + strand, within HMPREF1078_RS04920 at 240.381 kb on + strand, within HMPREF1078_RS04920 at 240.382 kb on - strand, within HMPREF1078_RS04920 at 240.385 kb on + strand, within HMPREF1078_RS04920 at 240.385 kb on + strand, within HMPREF1078_RS04920 at 240.385 kb on + strand, within HMPREF1078_RS04920 at 240.386 kb on - strand, within HMPREF1078_RS04920 at 240.386 kb on - strand, within HMPREF1078_RS04920 at 240.386 kb on - strand, within HMPREF1078_RS04920 at 240.386 kb on - strand, within HMPREF1078_RS04920 at 240.390 kb on + strand, within HMPREF1078_RS04920 at 240.478 kb on + strand, within HMPREF1078_RS04920 at 240.611 kb on - strand, within HMPREF1078_RS04920 at 240.625 kb on + strand, within HMPREF1078_RS04920 at 240.682 kb on + strand, within HMPREF1078_RS04920 at 240.725 kb on + strand, within HMPREF1078_RS04920 at 240.831 kb on - strand at 240.833 kb on + strand at 240.881 kb on + strand at 240.882 kb on - strand at 240.893 kb on - strand at 240.927 kb on + strand at 240.927 kb on + strand at 240.938 kb on - strand at 240.953 kb on + strand at 240.953 kb on + strand at 240.954 kb on - strand at 241.012 kb on + strand at 241.018 kb on + strand at 241.018 kb on + strand at 241.019 kb on - strand at 241.020 kb on + strand at 241.020 kb on + strand at 241.020 kb on + strand at 241.020 kb on + strand at 241.021 kb on - strand at 241.021 kb on - strand at 241.023 kb on + strand at 241.024 kb on - strand at 241.024 kb on - strand at 241.026 kb on - strand at 241.035 kb on + strand at 241.038 kb on + strand at 241.039 kb on - strand at 241.044 kb on + strand at 241.045 kb on - strand at 241.074 kb on + strand at 241.075 kb on - strand at 241.075 kb on - strand at 241.089 kb on + strand at 241.090 kb on - strand at 241.096 kb on + strand, within HMPREF1078_RS04925 at 241.096 kb on + strand, within HMPREF1078_RS04925 at 241.121 kb on + strand, within HMPREF1078_RS04925 at 241.152 kb on + strand, within HMPREF1078_RS04925 at 241.153 kb on - strand, within HMPREF1078_RS04925 at 241.153 kb on - strand, within HMPREF1078_RS04925 at 241.173 kb on - strand, within HMPREF1078_RS04925 at 241.226 kb on + strand, within HMPREF1078_RS04925 at 241.226 kb on + strand, within HMPREF1078_RS04925 at 241.232 kb on + strand, within HMPREF1078_RS04925 at 241.246 kb on + strand, within HMPREF1078_RS04925 at 241.252 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.258 kb on + strand, within HMPREF1078_RS04925 at 241.259 kb on - strand, within HMPREF1078_RS04925 at 241.276 kb on + strand, within HMPREF1078_RS04925 at 241.308 kb on + strand, within HMPREF1078_RS04925 at 241.413 kb on + strand, within HMPREF1078_RS04925 at 241.413 kb on + strand, within HMPREF1078_RS04925 at 241.413 kb on + strand, within HMPREF1078_RS04925 at 241.413 kb on + strand, within HMPREF1078_RS04925 at 241.422 kb on - strand, within HMPREF1078_RS04925 at 241.444 kb on + strand, within HMPREF1078_RS04925 at 241.447 kb on - strand, within HMPREF1078_RS04925 at 241.470 kb on + strand, within HMPREF1078_RS04925 at 241.471 kb on - strand, within HMPREF1078_RS04925 at 241.471 kb on - strand, within HMPREF1078_RS04925 at 241.503 kb on - strand, within HMPREF1078_RS04925 at 241.520 kb on + strand, within HMPREF1078_RS04925 at 241.566 kb on + strand at 241.566 kb on + strand at 241.582 kb on + strand at 241.583 kb on - strand at 241.583 kb on - strand at 241.586 kb on + strand at 241.587 kb on - strand at 241.594 kb on - strand at 241.605 kb on + strand at 241.606 kb on - strand at 241.607 kb on + strand at 241.608 kb on - strand at 241.614 kb on + strand at 241.614 kb on + strand at 241.615 kb on - strand at 241.615 kb on - strand at 241.615 kb on - strand at 241.621 kb on + strand at 241.622 kb on - strand at 241.628 kb on + strand at 241.631 kb on - strand at 241.643 kb on + strand at 241.643 kb on + strand at 241.644 kb on - strand at 241.644 kb on - strand at 241.651 kb on - strand at 241.657 kb on + strand at 241.657 kb on + strand at 241.658 kb on - strand at 241.688 kb on - strand at 241.688 kb on - strand at 241.695 kb on + strand at 241.737 kb on + strand at 241.747 kb on + strand at 241.748 kb on - strand at 241.748 kb on - strand at 241.774 kb on - strand, within HMPREF1078_RS04930
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 239,210 + +1.8 239,210 + -0.1 239,215 + -0.4 239,257 - -0.6 239,288 + +0.0 239,300 + -0.4 239,312 - +0.8 239,467 + +0.9 239,467 + -0.5 239,468 - -0.4 239,469 + -0.6 239,517 + +1.5 239,518 - +0.6 239,520 - -1.2 239,534 - +0.5 239,534 - +0.0 239,771 + -1.9 239,800 + -1.0 239,801 - -0.1 239,801 - +0.4 239,801 - -0.3 239,801 - +0.1 239,812 - -0.8 239,812 - -0.2 239,814 + -0.4 239,814 + -1.2 239,881 + HMPREF1078_RS04915 0.21 +0.2 239,890 + HMPREF1078_RS04915 0.24 -0.5 239,890 + HMPREF1078_RS04915 0.24 +1.1 239,913 + HMPREF1078_RS04915 0.30 +0.2 239,914 - HMPREF1078_RS04915 0.30 -1.2 239,947 + HMPREF1078_RS04915 0.40 +0.2 240,108 + HMPREF1078_RS04915 0.86 +0.1 240,109 - HMPREF1078_RS04915 0.86 -1.1 240,109 - HMPREF1078_RS04915 0.86 -0.4 240,109 - HMPREF1078_RS04915 0.86 -1.6 240,239 + HMPREF1078_RS04920 0.13 +1.6 240,263 + HMPREF1078_RS04920 0.16 -1.8 240,264 - HMPREF1078_RS04920 0.16 -0.2 240,271 + HMPREF1078_RS04920 0.17 -0.5 240,272 - HMPREF1078_RS04920 0.17 +0.7 240,282 - HMPREF1078_RS04920 0.19 -1.7 240,282 - HMPREF1078_RS04920 0.19 +0.8 240,381 + HMPREF1078_RS04920 0.33 -0.5 240,381 + HMPREF1078_RS04920 0.33 -0.1 240,382 - HMPREF1078_RS04920 0.33 -3.4 240,385 + HMPREF1078_RS04920 0.34 -0.3 240,385 + HMPREF1078_RS04920 0.34 -0.7 240,385 + HMPREF1078_RS04920 0.34 +1.1 240,386 - HMPREF1078_RS04920 0.34 +2.5 240,386 - HMPREF1078_RS04920 0.34 +0.3 240,386 - HMPREF1078_RS04920 0.34 +1.7 240,386 - HMPREF1078_RS04920 0.34 -2.4 240,390 + HMPREF1078_RS04920 0.34 +0.4 240,478 + HMPREF1078_RS04920 0.47 +0.7 240,611 - HMPREF1078_RS04920 0.66 +1.3 240,625 + HMPREF1078_RS04920 0.68 -0.3 240,682 + HMPREF1078_RS04920 0.76 +0.4 240,725 + HMPREF1078_RS04920 0.82 +0.9 240,831 - -1.5 240,833 + +0.8 240,881 + -0.5 240,882 - +0.1 240,893 - +1.4 240,927 + -0.3 240,927 + +0.6 240,938 - -0.7 240,953 + +0.4 240,953 + -0.5 240,954 - +0.2 241,012 + +0.4 241,018 + -1.2 241,018 + +0.1 241,019 - -0.0 241,020 + -0.6 241,020 + -1.1 241,020 + -0.3 241,020 + +2.0 241,021 - -1.6 241,021 - +1.6 241,023 + +0.9 241,024 - -1.1 241,024 - +1.7 241,026 - +0.4 241,035 + +0.7 241,038 + +2.9 241,039 - -1.1 241,044 + -0.3 241,045 - +1.3 241,074 + +1.1 241,075 - +0.3 241,075 - -1.9 241,089 + -1.0 241,090 - +1.4 241,096 + HMPREF1078_RS04925 0.10 -0.1 241,096 + HMPREF1078_RS04925 0.10 +1.8 241,121 + HMPREF1078_RS04925 0.15 +1.5 241,152 + HMPREF1078_RS04925 0.20 -0.2 241,153 - HMPREF1078_RS04925 0.20 +0.8 241,153 - HMPREF1078_RS04925 0.20 +1.7 241,173 - HMPREF1078_RS04925 0.24 +2.8 241,226 + HMPREF1078_RS04925 0.33 +0.1 241,226 + HMPREF1078_RS04925 0.33 +1.7 241,232 + HMPREF1078_RS04925 0.34 -0.7 241,246 + HMPREF1078_RS04925 0.37 -0.2 241,252 + HMPREF1078_RS04925 0.38 -0.1 241,254 + HMPREF1078_RS04925 0.38 +1.4 241,254 + HMPREF1078_RS04925 0.38 +0.0 241,254 + HMPREF1078_RS04925 0.38 +0.2 241,254 + HMPREF1078_RS04925 0.38 +1.1 241,254 + HMPREF1078_RS04925 0.38 -1.0 241,254 + HMPREF1078_RS04925 0.38 +3.6 241,254 + HMPREF1078_RS04925 0.38 +0.5 241,254 + HMPREF1078_RS04925 0.38 +1.0 241,254 + HMPREF1078_RS04925 0.38 +1.9 241,254 + HMPREF1078_RS04925 0.38 +3.0 241,255 - HMPREF1078_RS04925 0.38 -0.5 241,255 - HMPREF1078_RS04925 0.38 -1.6 241,255 - HMPREF1078_RS04925 0.38 -0.5 241,255 - HMPREF1078_RS04925 0.38 +2.3 241,255 - HMPREF1078_RS04925 0.38 +1.3 241,255 - HMPREF1078_RS04925 0.38 +2.2 241,255 - HMPREF1078_RS04925 0.38 -1.0 241,255 - HMPREF1078_RS04925 0.38 +1.3 241,258 + HMPREF1078_RS04925 0.39 +2.5 241,259 - HMPREF1078_RS04925 0.39 +1.5 241,276 + HMPREF1078_RS04925 0.42 -0.9 241,308 + HMPREF1078_RS04925 0.48 +1.2 241,413 + HMPREF1078_RS04925 0.66 -1.1 241,413 + HMPREF1078_RS04925 0.66 -1.0 241,413 + HMPREF1078_RS04925 0.66 +1.0 241,413 + HMPREF1078_RS04925 0.66 +0.3 241,422 - HMPREF1078_RS04925 0.68 +1.4 241,444 + HMPREF1078_RS04925 0.72 -0.6 241,447 - HMPREF1078_RS04925 0.72 -0.6 241,470 + HMPREF1078_RS04925 0.76 +0.1 241,471 - HMPREF1078_RS04925 0.77 +3.4 241,471 - HMPREF1078_RS04925 0.77 -1.8 241,503 - HMPREF1078_RS04925 0.82 +1.8 241,520 + HMPREF1078_RS04925 0.85 +2.5 241,566 + +0.3 241,566 + +0.1 241,582 + +0.2 241,583 - -1.2 241,583 - +0.5 241,586 + +1.1 241,587 - +2.5 241,594 - +0.6 241,605 + -2.2 241,606 - -2.6 241,607 + -0.4 241,608 - +1.1 241,614 + -0.3 241,614 + -0.0 241,615 - -0.3 241,615 - +0.3 241,615 - +0.5 241,621 + -1.3 241,622 - +0.9 241,628 + -0.6 241,631 - -1.5 241,643 + +0.2 241,643 + +1.6 241,644 - +0.3 241,644 - +0.3 241,651 - -0.3 241,657 + -1.0 241,657 + -0.6 241,658 - -1.3 241,688 - +0.1 241,688 - -1.4 241,695 + -0.4 241,737 + -2.0 241,747 + -3.6 241,748 - +0.6 241,748 - +0.4 241,774 - HMPREF1078_RS04930 0.13 +0.4
Or see this region's nucleotide sequence