Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS04805

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS04795 and HMPREF1078_RS04800 are separated by 9 nucleotidesHMPREF1078_RS04800 and HMPREF1078_RS04805 are separated by 72 nucleotidesHMPREF1078_RS04805 and HMPREF1078_RS04810 are separated by 4 nucleotidesHMPREF1078_RS04810 and HMPREF1078_RS04815 are separated by 199 nucleotides HMPREF1078_RS04795: HMPREF1078_RS04795 - CDP-alcohol phosphatidyltransferase family protein, at 207,338 to 208,042 _RS04795 HMPREF1078_RS04800: HMPREF1078_RS04800 - phosphatidylserine decarboxylase family protein, at 208,052 to 208,714 _RS04800 HMPREF1078_RS04805: HMPREF1078_RS04805 - UvrD-helicase domain-containing protein, at 208,787 to 212,014 _RS04805 HMPREF1078_RS04810: HMPREF1078_RS04810 - translation initiation factor, at 212,019 to 212,363 _RS04810 HMPREF1078_RS04815: HMPREF1078_RS04815 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 212,563 to 213,039 _RS04815 Position (kb) 208 209 210 211 212 213Strain fitness (log2 ratio) -2 -1 0 1 2 3at 208.733 kb on - strandat 208.805 kb on + strandat 208.814 kb on + strandat 208.814 kb on + strandat 208.824 kb on + strandat 208.825 kb on - strandat 208.825 kb on - strandat 208.887 kb on - strandat 208.894 kb on + strandat 208.895 kb on - strandat 208.895 kb on - strandat 208.895 kb on - strandat 208.895 kb on - strandat 208.927 kb on + strandat 208.928 kb on - strandat 209.171 kb on + strand, within HMPREF1078_RS04805at 209.252 kb on + strand, within HMPREF1078_RS04805at 209.253 kb on - strand, within HMPREF1078_RS04805at 209.284 kb on + strand, within HMPREF1078_RS04805at 209.422 kb on + strand, within HMPREF1078_RS04805at 209.554 kb on + strand, within HMPREF1078_RS04805at 209.566 kb on - strand, within HMPREF1078_RS04805at 209.566 kb on - strand, within HMPREF1078_RS04805at 209.568 kb on - strand, within HMPREF1078_RS04805at 209.766 kb on - strand, within HMPREF1078_RS04805at 209.911 kb on + strand, within HMPREF1078_RS04805at 210.003 kb on - strand, within HMPREF1078_RS04805at 210.108 kb on + strand, within HMPREF1078_RS04805at 210.108 kb on + strand, within HMPREF1078_RS04805at 210.109 kb on - strand, within HMPREF1078_RS04805at 210.110 kb on + strand, within HMPREF1078_RS04805at 210.153 kb on + strand, within HMPREF1078_RS04805at 210.220 kb on + strand, within HMPREF1078_RS04805at 210.260 kb on - strand, within HMPREF1078_RS04805at 210.261 kb on + strand, within HMPREF1078_RS04805at 210.269 kb on + strand, within HMPREF1078_RS04805at 210.336 kb on + strand, within HMPREF1078_RS04805at 210.410 kb on - strand, within HMPREF1078_RS04805at 210.434 kb on + strand, within HMPREF1078_RS04805at 210.485 kb on - strand, within HMPREF1078_RS04805at 210.489 kb on + strand, within HMPREF1078_RS04805at 210.506 kb on - strand, within HMPREF1078_RS04805at 210.565 kb on - strand, within HMPREF1078_RS04805at 210.595 kb on + strand, within HMPREF1078_RS04805at 210.725 kb on - strand, within HMPREF1078_RS04805at 210.725 kb on - strand, within HMPREF1078_RS04805at 210.857 kb on - strand, within HMPREF1078_RS04805at 210.859 kb on - strand, within HMPREF1078_RS04805at 210.859 kb on - strand, within HMPREF1078_RS04805at 210.859 kb on - strand, within HMPREF1078_RS04805at 210.859 kb on - strand, within HMPREF1078_RS04805at 211.024 kb on - strand, within HMPREF1078_RS04805at 211.288 kb on + strand, within HMPREF1078_RS04805at 211.296 kb on + strand, within HMPREF1078_RS04805at 211.301 kb on - strand, within HMPREF1078_RS04805at 211.410 kb on - strand, within HMPREF1078_RS04805at 211.410 kb on - strand, within HMPREF1078_RS04805at 211.442 kb on - strand, within HMPREF1078_RS04805at 211.443 kb on + strand, within HMPREF1078_RS04805at 211.443 kb on + strand, within HMPREF1078_RS04805at 211.444 kb on - strand, within HMPREF1078_RS04805at 211.444 kb on - strand, within HMPREF1078_RS04805at 211.480 kb on + strand, within HMPREF1078_RS04805at 211.481 kb on - strand, within HMPREF1078_RS04805at 211.520 kb on - strand, within HMPREF1078_RS04805at 211.861 kb on + strandat 211.861 kb on + strandat 211.862 kb on - strandat 212.015 kb on - strandat 212.015 kb on - strandat 212.015 kb on - strandat 212.015 kb on - strandat 212.015 kb on - strandat 212.042 kb on - strandat 212.042 kb on - strandat 212.355 kb on - strandat 212.364 kb on - strandat 212.420 kb on + strandat 212.420 kb on + strandat 212.420 kb on + strandat 212.420 kb on + strandat 212.421 kb on - strandat 212.421 kb on - strandat 212.421 kb on - strandat 212.421 kb on - strandat 212.429 kb on - strandat 212.429 kb on - strandat 212.468 kb on + strandat 212.468 kb on + strandat 212.469 kb on - strandat 212.469 kb on - strandat 212.470 kb on + strandat 212.493 kb on - strandat 212.527 kb on + strandat 212.538 kb on + strandat 212.560 kb on - strandat 212.565 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C)
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208,733 - +2.3
208,805 + -0.9
208,814 + -1.9
208,814 + -2.3
208,824 + -0.6
208,825 - +0.1
208,825 - -0.2
208,887 - -0.8
208,894 + -1.1
208,895 - -0.3
208,895 - -0.6
208,895 - +3.2
208,895 - +0.7
208,927 + +0.5
208,928 - +0.2
209,171 + HMPREF1078_RS04805 0.12 -0.1
209,252 + HMPREF1078_RS04805 0.14 +0.3
209,253 - HMPREF1078_RS04805 0.14 +0.2
209,284 + HMPREF1078_RS04805 0.15 -1.6
209,422 + HMPREF1078_RS04805 0.20 -0.3
209,554 + HMPREF1078_RS04805 0.24 -0.2
209,566 - HMPREF1078_RS04805 0.24 +1.3
209,566 - HMPREF1078_RS04805 0.24 -0.2
209,568 - HMPREF1078_RS04805 0.24 +1.3
209,766 - HMPREF1078_RS04805 0.30 -0.6
209,911 + HMPREF1078_RS04805 0.35 -1.5
210,003 - HMPREF1078_RS04805 0.38 -0.5
210,108 + HMPREF1078_RS04805 0.41 -0.5
210,108 + HMPREF1078_RS04805 0.41 +0.8
210,109 - HMPREF1078_RS04805 0.41 +1.8
210,110 + HMPREF1078_RS04805 0.41 -0.9
210,153 + HMPREF1078_RS04805 0.42 -1.3
210,220 + HMPREF1078_RS04805 0.44 -1.5
210,260 - HMPREF1078_RS04805 0.46 +0.0
210,261 + HMPREF1078_RS04805 0.46 -0.3
210,269 + HMPREF1078_RS04805 0.46 +0.3
210,336 + HMPREF1078_RS04805 0.48 +1.3
210,410 - HMPREF1078_RS04805 0.50 +0.3
210,434 + HMPREF1078_RS04805 0.51 +0.5
210,485 - HMPREF1078_RS04805 0.53 -1.7
210,489 + HMPREF1078_RS04805 0.53 -0.5
210,506 - HMPREF1078_RS04805 0.53 -1.6
210,565 - HMPREF1078_RS04805 0.55 +0.8
210,595 + HMPREF1078_RS04805 0.56 -0.5
210,725 - HMPREF1078_RS04805 0.60 -0.9
210,725 - HMPREF1078_RS04805 0.60 +1.3
210,857 - HMPREF1078_RS04805 0.64 -0.2
210,859 - HMPREF1078_RS04805 0.64 -1.7
210,859 - HMPREF1078_RS04805 0.64 +1.8
210,859 - HMPREF1078_RS04805 0.64 +0.8
210,859 - HMPREF1078_RS04805 0.64 +0.3
211,024 - HMPREF1078_RS04805 0.69 -0.3
211,288 + HMPREF1078_RS04805 0.77 -0.9
211,296 + HMPREF1078_RS04805 0.78 +0.0
211,301 - HMPREF1078_RS04805 0.78 -0.6
211,410 - HMPREF1078_RS04805 0.81 +0.0
211,410 - HMPREF1078_RS04805 0.81 -0.5
211,442 - HMPREF1078_RS04805 0.82 -0.3
211,443 + HMPREF1078_RS04805 0.82 -0.2
211,443 + HMPREF1078_RS04805 0.82 +0.5
211,444 - HMPREF1078_RS04805 0.82 -0.5
211,444 - HMPREF1078_RS04805 0.82 -0.6
211,480 + HMPREF1078_RS04805 0.83 -1.2
211,481 - HMPREF1078_RS04805 0.83 -0.7
211,520 - HMPREF1078_RS04805 0.85 +1.3
211,861 + -0.5
211,861 + -0.2
211,862 - -1.1
212,015 - -0.0
212,015 - -2.3
212,015 - -0.1
212,015 - -0.5
212,015 - -1.8
212,042 - -2.4
212,042 - +1.5
212,355 - +0.2
212,364 - -1.9
212,420 + -1.1
212,420 + +0.5
212,420 + +0.0
212,420 + -0.3
212,421 - +0.3
212,421 - +0.2
212,421 - -0.3
212,421 - -0.6
212,429 - -0.1
212,429 - -0.6
212,468 + +1.0
212,468 + -0.0
212,469 - +0.2
212,469 - -1.3
212,470 + +2.3
212,493 - -1.5
212,527 + -0.6
212,538 + -1.3
212,560 - -1.4
212,565 - +0.1

Or see this region's nucleotide sequence