Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04760 and HMPREF1078_RS04765 are separated by 125 nucleotides HMPREF1078_RS04765 and HMPREF1078_RS04770 overlap by 8 nucleotides HMPREF1078_RS04770 and HMPREF1078_RS04775 are separated by 14 nucleotides HMPREF1078_RS04775 and HMPREF1078_RS04780 are separated by 69 nucleotides HMPREF1078_RS04780 and HMPREF1078_RS04785 overlap by 4 nucleotides
HMPREF1078_RS04760: HMPREF1078_RS04760 - GH92 family glycosyl hydrolase, at 202,456 to 204,663
_RS04760
HMPREF1078_RS04765: HMPREF1078_RS04765 - biotin--[acetyl-CoA-carboxylase] ligase, at 204,789 to 205,544
_RS04765
HMPREF1078_RS04770: HMPREF1078_RS04770 - MmcQ/YjbR family DNA-binding protein, at 205,537 to 205,893
_RS04770
HMPREF1078_RS04775: HMPREF1078_RS04775 - YraN family protein, at 205,908 to 206,276
_RS04775
HMPREF1078_RS04780: HMPREF1078_RS04780 - hypothetical protein, at 206,346 to 206,573
_RS04780
HMPREF1078_RS04785: HMPREF1078_RS04785 - nucleoside deaminase, at 206,570 to 207,013
_RS04785
Position (kb) 205
206 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 204.547 kb on + strand at 204.547 kb on + strand at 204.661 kb on + strand at 204.734 kb on + strand at 204.735 kb on - strand at 204.735 kb on - strand at 204.765 kb on + strand at 204.780 kb on + strand at 204.780 kb on + strand at 204.791 kb on - strand at 204.811 kb on - strand at 204.811 kb on - strand at 205.650 kb on - strand, within HMPREF1078_RS04770 at 205.702 kb on - strand, within HMPREF1078_RS04770 at 205.702 kb on - strand, within HMPREF1078_RS04770 at 205.728 kb on - strand, within HMPREF1078_RS04770 at 205.886 kb on - strand at 205.888 kb on - strand at 205.942 kb on - strand at 206.030 kb on - strand, within HMPREF1078_RS04775 at 206.052 kb on - strand, within HMPREF1078_RS04775 at 206.142 kb on - strand, within HMPREF1078_RS04775 at 206.171 kb on - strand, within HMPREF1078_RS04775 at 206.297 kb on - strand at 206.297 kb on - strand at 206.297 kb on - strand at 206.299 kb on - strand at 206.333 kb on - strand at 206.360 kb on + strand at 206.360 kb on + strand at 206.365 kb on - strand at 206.448 kb on + strand, within HMPREF1078_RS04780 at 206.449 kb on - strand, within HMPREF1078_RS04780 at 206.460 kb on + strand, within HMPREF1078_RS04780 at 206.463 kb on - strand, within HMPREF1078_RS04780 at 206.512 kb on + strand, within HMPREF1078_RS04780 at 206.512 kb on + strand, within HMPREF1078_RS04780 at 206.513 kb on - strand, within HMPREF1078_RS04780 at 206.513 kb on - strand, within HMPREF1078_RS04780 at 206.516 kb on + strand, within HMPREF1078_RS04780 at 206.516 kb on + strand, within HMPREF1078_RS04780 at 206.516 kb on + strand, within HMPREF1078_RS04780 at 206.517 kb on - strand, within HMPREF1078_RS04780 at 206.535 kb on + strand, within HMPREF1078_RS04780 at 206.540 kb on + strand, within HMPREF1078_RS04780 at 206.541 kb on - strand, within HMPREF1078_RS04780 at 206.613 kb on + strand at 206.614 kb on - strand at 206.616 kb on + strand, within HMPREF1078_RS04785 at 206.670 kb on + strand, within HMPREF1078_RS04785 at 206.670 kb on + strand, within HMPREF1078_RS04785 at 206.670 kb on + strand, within HMPREF1078_RS04785 at 206.674 kb on + strand, within HMPREF1078_RS04785 at 206.674 kb on + strand, within HMPREF1078_RS04785 at 206.675 kb on - strand, within HMPREF1078_RS04785 at 206.675 kb on - strand, within HMPREF1078_RS04785 at 206.677 kb on + strand, within HMPREF1078_RS04785 at 206.677 kb on + strand, within HMPREF1078_RS04785 at 206.748 kb on + strand, within HMPREF1078_RS04785 at 206.749 kb on - strand, within HMPREF1078_RS04785 at 206.786 kb on + strand, within HMPREF1078_RS04785 at 206.786 kb on + strand, within HMPREF1078_RS04785 at 206.786 kb on + strand, within HMPREF1078_RS04785 at 206.808 kb on - strand, within HMPREF1078_RS04785 at 206.808 kb on - strand, within HMPREF1078_RS04785 at 206.862 kb on + strand, within HMPREF1078_RS04785 at 206.877 kb on - strand, within HMPREF1078_RS04785
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 204,547 + -0.6 204,547 + +1.6 204,661 + -0.3 204,734 + -0.5 204,735 - +0.5 204,735 - -2.0 204,765 + -0.6 204,780 + -0.3 204,780 + -0.9 204,791 - +0.4 204,811 - -3.3 204,811 - +1.0 205,650 - HMPREF1078_RS04770 0.32 -2.6 205,702 - HMPREF1078_RS04770 0.46 -1.5 205,702 - HMPREF1078_RS04770 0.46 +0.5 205,728 - HMPREF1078_RS04770 0.54 -1.4 205,886 - -0.6 205,888 - +0.4 205,942 - -0.3 206,030 - HMPREF1078_RS04775 0.33 +0.2 206,052 - HMPREF1078_RS04775 0.39 -0.6 206,142 - HMPREF1078_RS04775 0.63 -0.9 206,171 - HMPREF1078_RS04775 0.71 -0.7 206,297 - +0.2 206,297 - +1.0 206,297 - -0.2 206,299 - -0.1 206,333 - +1.6 206,360 + -0.5 206,360 + +0.6 206,365 - +1.5 206,448 + HMPREF1078_RS04780 0.45 -0.6 206,449 - HMPREF1078_RS04780 0.45 +2.0 206,460 + HMPREF1078_RS04780 0.50 -0.1 206,463 - HMPREF1078_RS04780 0.51 +2.4 206,512 + HMPREF1078_RS04780 0.73 +0.5 206,512 + HMPREF1078_RS04780 0.73 +0.1 206,513 - HMPREF1078_RS04780 0.73 +1.6 206,513 - HMPREF1078_RS04780 0.73 +3.0 206,516 + HMPREF1078_RS04780 0.75 -0.0 206,516 + HMPREF1078_RS04780 0.75 +0.2 206,516 + HMPREF1078_RS04780 0.75 +0.5 206,517 - HMPREF1078_RS04780 0.75 +2.1 206,535 + HMPREF1078_RS04780 0.83 +0.8 206,540 + HMPREF1078_RS04780 0.85 -0.7 206,541 - HMPREF1078_RS04780 0.86 +1.7 206,613 + +3.3 206,614 - +2.4 206,616 + HMPREF1078_RS04785 0.10 +2.2 206,670 + HMPREF1078_RS04785 0.23 +1.2 206,670 + HMPREF1078_RS04785 0.23 +3.3 206,670 + HMPREF1078_RS04785 0.23 +2.4 206,674 + HMPREF1078_RS04785 0.23 -0.5 206,674 + HMPREF1078_RS04785 0.23 -0.5 206,675 - HMPREF1078_RS04785 0.24 +3.5 206,675 - HMPREF1078_RS04785 0.24 -1.4 206,677 + HMPREF1078_RS04785 0.24 +1.0 206,677 + HMPREF1078_RS04785 0.24 +2.4 206,748 + HMPREF1078_RS04785 0.40 +2.8 206,749 - HMPREF1078_RS04785 0.40 +2.1 206,786 + HMPREF1078_RS04785 0.49 +1.8 206,786 + HMPREF1078_RS04785 0.49 +2.1 206,786 + HMPREF1078_RS04785 0.49 +0.7 206,808 - HMPREF1078_RS04785 0.54 +2.2 206,808 - HMPREF1078_RS04785 0.54 +1.6 206,862 + HMPREF1078_RS04785 0.66 +4.7 206,877 - HMPREF1078_RS04785 0.69 +2.2
Or see this region's nucleotide sequence