Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04705 and HMPREF1078_RS04710 overlap by 4 nucleotides HMPREF1078_RS04710 and HMPREF1078_RS04715 overlap by 4 nucleotides
HMPREF1078_RS04705: HMPREF1078_RS04705 - site-specific tyrosine recombinase XerD, at 185,075 to 185,980
_RS04705
HMPREF1078_RS04710: HMPREF1078_RS04710 - DUF4954 family protein, at 185,977 to 187,971
_RS04710
HMPREF1078_RS04715: HMPREF1078_RS04715 - GTPase HflX, at 187,968 to 189,179
_RS04715
Position (kb) 185
186
187
188 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 184.990 kb on + strand at 184.991 kb on - strand at 185.051 kb on - strand at 185.057 kb on + strand at 185.097 kb on + strand at 185.106 kb on - strand at 185.106 kb on - strand at 185.114 kb on + strand at 185.149 kb on + strand at 185.228 kb on + strand, within HMPREF1078_RS04705 at 185.228 kb on + strand, within HMPREF1078_RS04705 at 185.229 kb on - strand, within HMPREF1078_RS04705 at 185.229 kb on - strand, within HMPREF1078_RS04705 at 185.345 kb on + strand, within HMPREF1078_RS04705 at 185.345 kb on + strand, within HMPREF1078_RS04705 at 185.347 kb on + strand, within HMPREF1078_RS04705 at 185.348 kb on - strand, within HMPREF1078_RS04705 at 185.348 kb on - strand, within HMPREF1078_RS04705 at 185.348 kb on - strand, within HMPREF1078_RS04705 at 185.348 kb on - strand, within HMPREF1078_RS04705 at 185.349 kb on + strand, within HMPREF1078_RS04705 at 185.350 kb on - strand, within HMPREF1078_RS04705 at 185.373 kb on + strand, within HMPREF1078_RS04705 at 185.429 kb on - strand, within HMPREF1078_RS04705 at 185.501 kb on + strand, within HMPREF1078_RS04705 at 185.501 kb on + strand, within HMPREF1078_RS04705 at 185.556 kb on - strand, within HMPREF1078_RS04705 at 185.654 kb on + strand, within HMPREF1078_RS04705 at 185.749 kb on + strand, within HMPREF1078_RS04705 at 185.749 kb on + strand, within HMPREF1078_RS04705 at 185.804 kb on - strand, within HMPREF1078_RS04705 at 185.861 kb on - strand, within HMPREF1078_RS04705 at 185.906 kb on + strand at 185.944 kb on - strand at 185.944 kb on - strand at 185.962 kb on + strand at 185.979 kb on - strand at 186.036 kb on + strand at 186.036 kb on + strand at 186.036 kb on + strand at 186.036 kb on + strand at 186.036 kb on + strand at 186.151 kb on - strand at 186.177 kb on + strand, within HMPREF1078_RS04710 at 186.178 kb on - strand, within HMPREF1078_RS04710 at 186.179 kb on + strand, within HMPREF1078_RS04710 at 186.180 kb on - strand, within HMPREF1078_RS04710 at 186.272 kb on + strand, within HMPREF1078_RS04710 at 186.273 kb on - strand, within HMPREF1078_RS04710 at 186.273 kb on - strand, within HMPREF1078_RS04710 at 186.276 kb on - strand, within HMPREF1078_RS04710 at 186.276 kb on - strand, within HMPREF1078_RS04710 at 186.289 kb on - strand, within HMPREF1078_RS04710 at 186.294 kb on - strand, within HMPREF1078_RS04710 at 186.294 kb on - strand, within HMPREF1078_RS04710 at 186.317 kb on + strand, within HMPREF1078_RS04710 at 186.572 kb on + strand, within HMPREF1078_RS04710 at 186.626 kb on + strand, within HMPREF1078_RS04710 at 186.627 kb on - strand, within HMPREF1078_RS04710 at 186.698 kb on + strand, within HMPREF1078_RS04710 at 186.706 kb on - strand, within HMPREF1078_RS04710 at 186.707 kb on + strand, within HMPREF1078_RS04710 at 186.798 kb on + strand, within HMPREF1078_RS04710 at 186.817 kb on + strand, within HMPREF1078_RS04710 at 186.833 kb on + strand, within HMPREF1078_RS04710 at 186.833 kb on + strand, within HMPREF1078_RS04710 at 186.834 kb on - strand, within HMPREF1078_RS04710 at 186.834 kb on - strand, within HMPREF1078_RS04710 at 186.834 kb on - strand, within HMPREF1078_RS04710 at 186.862 kb on - strand, within HMPREF1078_RS04710 at 186.888 kb on + strand, within HMPREF1078_RS04710 at 186.950 kb on + strand, within HMPREF1078_RS04710 at 186.950 kb on + strand, within HMPREF1078_RS04710 at 186.951 kb on - strand, within HMPREF1078_RS04710 at 186.987 kb on + strand, within HMPREF1078_RS04710 at 187.014 kb on - strand, within HMPREF1078_RS04710 at 187.014 kb on - strand, within HMPREF1078_RS04710 at 187.014 kb on - strand, within HMPREF1078_RS04710 at 187.017 kb on + strand, within HMPREF1078_RS04710 at 187.017 kb on + strand, within HMPREF1078_RS04710 at 187.017 kb on + strand, within HMPREF1078_RS04710 at 187.017 kb on + strand, within HMPREF1078_RS04710 at 187.017 kb on + strand, within HMPREF1078_RS04710 at 187.017 kb on + strand, within HMPREF1078_RS04710 at 187.018 kb on - strand, within HMPREF1078_RS04710 at 187.018 kb on - strand, within HMPREF1078_RS04710 at 187.024 kb on - strand, within HMPREF1078_RS04710 at 187.061 kb on + strand, within HMPREF1078_RS04710 at 187.090 kb on - strand, within HMPREF1078_RS04710 at 187.123 kb on - strand, within HMPREF1078_RS04710 at 187.228 kb on - strand, within HMPREF1078_RS04710 at 187.285 kb on - strand, within HMPREF1078_RS04710 at 187.301 kb on + strand, within HMPREF1078_RS04710 at 187.403 kb on - strand, within HMPREF1078_RS04710 at 187.404 kb on + strand, within HMPREF1078_RS04710 at 187.440 kb on - strand, within HMPREF1078_RS04710 at 187.514 kb on + strand, within HMPREF1078_RS04710 at 187.515 kb on - strand, within HMPREF1078_RS04710 at 187.516 kb on + strand, within HMPREF1078_RS04710 at 187.517 kb on - strand, within HMPREF1078_RS04710 at 187.530 kb on - strand, within HMPREF1078_RS04710 at 187.556 kb on + strand, within HMPREF1078_RS04710 at 187.565 kb on - strand, within HMPREF1078_RS04710 at 187.637 kb on + strand, within HMPREF1078_RS04710 at 187.637 kb on + strand, within HMPREF1078_RS04710 at 187.637 kb on + strand, within HMPREF1078_RS04710 at 187.637 kb on + strand, within HMPREF1078_RS04710 at 187.638 kb on - strand, within HMPREF1078_RS04710 at 187.638 kb on - strand, within HMPREF1078_RS04710 at 187.638 kb on - strand, within HMPREF1078_RS04710 at 187.638 kb on - strand, within HMPREF1078_RS04710 at 187.657 kb on + strand, within HMPREF1078_RS04710 at 187.675 kb on + strand, within HMPREF1078_RS04710 at 187.676 kb on - strand, within HMPREF1078_RS04710 at 187.695 kb on - strand, within HMPREF1078_RS04710 at 187.695 kb on - strand, within HMPREF1078_RS04710 at 187.720 kb on - strand, within HMPREF1078_RS04710 at 187.740 kb on + strand, within HMPREF1078_RS04710 at 187.845 kb on + strand at 187.955 kb on - strand at 187.955 kb on - strand at 187.982 kb on - strand at 188.021 kb on + strand at 188.022 kb on - strand at 188.100 kb on - strand, within HMPREF1078_RS04715 at 188.231 kb on + strand, within HMPREF1078_RS04715 at 188.366 kb on - strand, within HMPREF1078_RS04715 at 188.514 kb on - strand, within HMPREF1078_RS04715 at 188.516 kb on + strand, within HMPREF1078_RS04715 at 188.553 kb on - strand, within HMPREF1078_RS04715 at 188.649 kb on + strand, within HMPREF1078_RS04715 at 188.666 kb on + strand, within HMPREF1078_RS04715 at 188.666 kb on + strand, within HMPREF1078_RS04715 at 188.667 kb on - strand, within HMPREF1078_RS04715 at 188.667 kb on - strand, within HMPREF1078_RS04715 at 188.673 kb on - strand, within HMPREF1078_RS04715 at 188.770 kb on + strand, within HMPREF1078_RS04715 at 188.771 kb on - strand, within HMPREF1078_RS04715 at 188.771 kb on - strand, within HMPREF1078_RS04715 at 188.775 kb on - strand, within HMPREF1078_RS04715 at 188.853 kb on - strand, within HMPREF1078_RS04715 at 188.925 kb on + strand, within HMPREF1078_RS04715 at 188.956 kb on + strand, within HMPREF1078_RS04715 at 188.957 kb on - strand, within HMPREF1078_RS04715
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 184,990 + -0.8 184,991 - -0.0 185,051 - -0.2 185,057 + -1.6 185,097 + -0.3 185,106 - +0.6 185,106 - -3.1 185,114 + -0.2 185,149 + -1.5 185,228 + HMPREF1078_RS04705 0.17 -0.3 185,228 + HMPREF1078_RS04705 0.17 -0.4 185,229 - HMPREF1078_RS04705 0.17 +0.3 185,229 - HMPREF1078_RS04705 0.17 -1.1 185,345 + HMPREF1078_RS04705 0.30 -0.2 185,345 + HMPREF1078_RS04705 0.30 -2.2 185,347 + HMPREF1078_RS04705 0.30 -0.2 185,348 - HMPREF1078_RS04705 0.30 -0.6 185,348 - HMPREF1078_RS04705 0.30 -0.2 185,348 - HMPREF1078_RS04705 0.30 +2.5 185,348 - HMPREF1078_RS04705 0.30 -0.3 185,349 + HMPREF1078_RS04705 0.30 -1.1 185,350 - HMPREF1078_RS04705 0.30 +2.3 185,373 + HMPREF1078_RS04705 0.33 +0.8 185,429 - HMPREF1078_RS04705 0.39 +2.2 185,501 + HMPREF1078_RS04705 0.47 +0.5 185,501 + HMPREF1078_RS04705 0.47 -1.1 185,556 - HMPREF1078_RS04705 0.53 -3.2 185,654 + HMPREF1078_RS04705 0.64 +0.2 185,749 + HMPREF1078_RS04705 0.74 -1.0 185,749 + HMPREF1078_RS04705 0.74 -0.5 185,804 - HMPREF1078_RS04705 0.80 -0.8 185,861 - HMPREF1078_RS04705 0.87 +2.0 185,906 + +0.2 185,944 - +0.0 185,944 - -1.4 185,962 + -1.3 185,979 - -2.7 186,036 + -0.8 186,036 + -3.6 186,036 + -2.7 186,036 + -1.8 186,036 + -0.6 186,151 - -2.9 186,177 + HMPREF1078_RS04710 0.10 -0.9 186,178 - HMPREF1078_RS04710 0.10 -2.9 186,179 + HMPREF1078_RS04710 0.10 +1.8 186,180 - HMPREF1078_RS04710 0.10 -1.0 186,272 + HMPREF1078_RS04710 0.15 -2.0 186,273 - HMPREF1078_RS04710 0.15 -0.6 186,273 - HMPREF1078_RS04710 0.15 -2.3 186,276 - HMPREF1078_RS04710 0.15 +0.5 186,276 - HMPREF1078_RS04710 0.15 -1.7 186,289 - HMPREF1078_RS04710 0.16 -0.9 186,294 - HMPREF1078_RS04710 0.16 -1.4 186,294 - HMPREF1078_RS04710 0.16 -1.5 186,317 + HMPREF1078_RS04710 0.17 -2.8 186,572 + HMPREF1078_RS04710 0.30 -1.0 186,626 + HMPREF1078_RS04710 0.33 -2.6 186,627 - HMPREF1078_RS04710 0.33 -1.5 186,698 + HMPREF1078_RS04710 0.36 -3.8 186,706 - HMPREF1078_RS04710 0.37 -3.6 186,707 + HMPREF1078_RS04710 0.37 -1.8 186,798 + HMPREF1078_RS04710 0.41 -0.9 186,817 + HMPREF1078_RS04710 0.42 -1.2 186,833 + HMPREF1078_RS04710 0.43 -1.9 186,833 + HMPREF1078_RS04710 0.43 -3.5 186,834 - HMPREF1078_RS04710 0.43 -2.0 186,834 - HMPREF1078_RS04710 0.43 -3.1 186,834 - HMPREF1078_RS04710 0.43 -2.5 186,862 - HMPREF1078_RS04710 0.44 -3.6 186,888 + HMPREF1078_RS04710 0.46 -2.4 186,950 + HMPREF1078_RS04710 0.49 -3.4 186,950 + HMPREF1078_RS04710 0.49 -1.3 186,951 - HMPREF1078_RS04710 0.49 -2.5 186,987 + HMPREF1078_RS04710 0.51 -2.3 187,014 - HMPREF1078_RS04710 0.52 -2.1 187,014 - HMPREF1078_RS04710 0.52 +0.2 187,014 - HMPREF1078_RS04710 0.52 -1.3 187,017 + HMPREF1078_RS04710 0.52 -0.7 187,017 + HMPREF1078_RS04710 0.52 +0.5 187,017 + HMPREF1078_RS04710 0.52 -2.1 187,017 + HMPREF1078_RS04710 0.52 -1.0 187,017 + HMPREF1078_RS04710 0.52 -0.1 187,017 + HMPREF1078_RS04710 0.52 -0.3 187,018 - HMPREF1078_RS04710 0.52 -1.5 187,018 - HMPREF1078_RS04710 0.52 -1.2 187,024 - HMPREF1078_RS04710 0.52 -2.8 187,061 + HMPREF1078_RS04710 0.54 -2.4 187,090 - HMPREF1078_RS04710 0.56 -0.6 187,123 - HMPREF1078_RS04710 0.57 -2.6 187,228 - HMPREF1078_RS04710 0.63 -2.8 187,285 - HMPREF1078_RS04710 0.66 +1.2 187,301 + HMPREF1078_RS04710 0.66 +0.7 187,403 - HMPREF1078_RS04710 0.71 -1.3 187,404 + HMPREF1078_RS04710 0.72 -2.3 187,440 - HMPREF1078_RS04710 0.73 +0.9 187,514 + HMPREF1078_RS04710 0.77 -2.6 187,515 - HMPREF1078_RS04710 0.77 -1.4 187,516 + HMPREF1078_RS04710 0.77 +0.1 187,517 - HMPREF1078_RS04710 0.77 -0.5 187,530 - HMPREF1078_RS04710 0.78 -0.3 187,556 + HMPREF1078_RS04710 0.79 -1.6 187,565 - HMPREF1078_RS04710 0.80 -1.6 187,637 + HMPREF1078_RS04710 0.83 -0.9 187,637 + HMPREF1078_RS04710 0.83 +0.5 187,637 + HMPREF1078_RS04710 0.83 +0.3 187,637 + HMPREF1078_RS04710 0.83 -0.4 187,638 - HMPREF1078_RS04710 0.83 -1.7 187,638 - HMPREF1078_RS04710 0.83 -0.8 187,638 - HMPREF1078_RS04710 0.83 -2.3 187,638 - HMPREF1078_RS04710 0.83 +3.2 187,657 + HMPREF1078_RS04710 0.84 -0.2 187,675 + HMPREF1078_RS04710 0.85 -3.2 187,676 - HMPREF1078_RS04710 0.85 +0.0 187,695 - HMPREF1078_RS04710 0.86 -1.9 187,695 - HMPREF1078_RS04710 0.86 -0.7 187,720 - HMPREF1078_RS04710 0.87 -2.5 187,740 + HMPREF1078_RS04710 0.88 +2.2 187,845 + -3.1 187,955 - -2.5 187,955 - -1.0 187,982 - -0.8 188,021 + -1.6 188,022 - -0.5 188,100 - HMPREF1078_RS04715 0.11 -2.3 188,231 + HMPREF1078_RS04715 0.22 -2.8 188,366 - HMPREF1078_RS04715 0.33 +0.7 188,514 - HMPREF1078_RS04715 0.45 -1.0 188,516 + HMPREF1078_RS04715 0.45 -0.9 188,553 - HMPREF1078_RS04715 0.48 -1.3 188,649 + HMPREF1078_RS04715 0.56 -0.9 188,666 + HMPREF1078_RS04715 0.58 -0.5 188,666 + HMPREF1078_RS04715 0.58 -0.5 188,667 - HMPREF1078_RS04715 0.58 -0.3 188,667 - HMPREF1078_RS04715 0.58 -0.4 188,673 - HMPREF1078_RS04715 0.58 -2.8 188,770 + HMPREF1078_RS04715 0.66 -1.6 188,771 - HMPREF1078_RS04715 0.66 +0.6 188,771 - HMPREF1078_RS04715 0.66 +0.2 188,775 - HMPREF1078_RS04715 0.67 +2.8 188,853 - HMPREF1078_RS04715 0.73 +0.0 188,925 + HMPREF1078_RS04715 0.79 -1.3 188,956 + HMPREF1078_RS04715 0.82 -2.9 188,957 - HMPREF1078_RS04715 0.82 -2.6
Or see this region's nucleotide sequence